CaUC08G141750 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G141750
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RNA-binding protein 7
Location	Ciama_Chr08: 1606665 .. 1613698 (+)
RNA-Seq Expression	CaUC08G141750
Synteny	CaUC08G141750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTATTTGAAAACATAAAAAAGGGCTGTCCGTACGAAAATCCATTTTCACGTACAAGAAAATTCCACTTCTCTCTCTCGTGAAACTTCCAGCCCTCAACCCCCTCCCGATCTGCTGTTTTTCTCTTCTCCGGCCAGTATTTCCAAGAGCAGCTCACGCGATTAACCCTTCTGATCTGCTGTTTTTCTCTTCTCGCGGCGGAGGCGGCGGCGCCGTTTTACTAACCTCCTTCTGATTTACCCCTTCCTGGCAATTGCCGAGCTACACTAGCCCTCTTCGTCGACGCTGCTCAAACAGAAGGCGGTCCACACACCTTTCGTTTTCCAGCGGCGCTGCACCCTACAAAGTGACTCCTTTCCTGCAACCGACGCACGAGCACAACGCAGCCGACCTATCAAACCCACCCAATCGGACTCGAGCCAACAGCATATTAAAACTCGGAGGTCAGCTTTCGGCGGCTGCCCACGCTTCACTCGGCCGTGAAACGGACTACTCATAGGCTGTAGTGTTCGATTTTGTGAAATCGAACACAATCAAAACACTTTTCGACTCCTCTCGGGTAAGATTTAGTGAGTAAGGACGCTCTAAATTCCTTTCGAACTTGAATAAAGTGCATTAGAATTGTCCCCAACACTTGAGAGCTCTTGTTTGTAGAAACTGCGATATTACCAATTTGATATACTAATTGGAAATACGGTTGAAATATAAACCACAATAGGAAAATCGAAATCGAAGCAGTAATAAATAGAGGTTTATTGGCTTACTGTCTTTACCGTTTTCCTCTTTCTCCTTTATCCTTACCTTTCCTTTTTTCTTTCTGAAGCTCCGGTCTAGGGTTTTGCATCTGAACTTGCAGAACAATCATGTTAGGAAGGTCAGATGGATGCACCATTTACGTTGGTATGTTTGTTTTTATCTTTATCCATCTTAATTTATGTTTTCTGTATTCTAATTTGTTGAACTCTTTTGTTCTCCTTTCATGAGGATTCTGTTTGCATTTTAAGCTTCGTGTTTTTACTTCTGTGAAGTTTCGTATGAAAATTGTGCTTTTGGGTGGTTGGTTTTATATTAGTTGTGTTTATTTCTTTCTATTATGTTTTACTATTGGACCTATATGACATATGACATATTTATTTGTTCTCTCACAAAGCTATGCTTAGATTTTTTGTTGGCGGGTTTCATAATTGAACAAAAAGGATTGGGTTATTTGCTGGATTTCTTACTCTCCAACTTTTTCCTCTCTTGTAAATATGTTTGATTTCTCTTTATAACATAATTGTTTGCTGCCTTTGGTGAAGAGGGTTGAAAGTTAACTTATTTTCTTTTTGATTTTCATAGATCTCCTATATTTTCTTCGTTTTTGCTTTAACTGGCACATCTAAATTTTCACTTTCACCATTGTCTTCAATCTGCTTCTTTGTGGGCTTTACCCCATTTGAGTACTGCTGCCCGTTTCTCTGTAATATTTCCTTAACATAACTGGTTGTTCAGTGAACTTACTTTTTTGGGGAACTTTTCTTCCCCTTTTATATTTTGATACAATATTATCTATTAAATTCTAAGGATGCAGCCTACTTGAATTTAGATACCACATTTTCTTCTGAATTTGATTTTGTTACTTACTTCACTTTTTGTAGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCTTTCTCAACGAAAATTTTTCATTTTATCTCTGCTTTTCTTGATGAACTCTGTTTTCTAACTTATACACTTGCTTTATGATTCAGTATTCATGTCATAACCATCTCCTCTAATTTGACCCATTTTGATCAGTAACTCACGTTAGATATATATAGAGTCTATTAACATGTGTGGTGCATTTGAAATTTTAGACCTTTTGTTTTATTATCGTATAATTTAATGAACGTAATTAAAAGTCAATGATTAAAATGTCTCAGAAGAATAGCATATGATTTGATTTTATACTAAAGTTTATATGTACTACTACTAAATATATATTAACTAATGAAGTAATCTTTGTAATCATTTAGAATAGTCCAAAAATTGTCCTTCATATGCCTTAAGCAGTATATTGCATACCTTTTTTGAAGTTTTAGAAATTAGATTACATTCCAATTGTATCACCTTTTCTTGTTATCACCAATTATATTACATTCCAAATATATTCATGGCTCACGATAAATTTAATCTAGTTTGGCGTATATCACCAAAATTTCAAATGACTTGGTTAGAAAGCTTTTGGCTCTCCAATTTTAGAGGATGAACATGAGGATTAGTACATTATTGAAAAACAGAAAGAAATTGAAAATATAATTTATTGACACTACTTGAGTACTCTAATGACTTCATTGAAGAACAGAAAAAATTATCGGAGTTGGGAGAATGAATGTAGATGCTTAAACATGATTAGAAAATCGAAACAAGTCTAAATATATAATTTCATCTTTTTTTACAAAAATGATATCTATTAGTTTTCTAAAAAGTGATGTCTTTTCTGGTTTTGTAAATAAATAAGAACAATATCAACAATGAAAAGTAAAACAGATACAAAGATTCCTTTTCCAGTTATAGATGGTTTCCTGATATATTATTGTTTACTGGCAGTCATACATTCCAATTTTATGATCTTTTTCTTTTGGAAAAAAAAAACAAGATCGTGGAATCTCCTTGTATCAGCCCTGATTGTGTGGTGAGCTATTTTGTTAAGGGAATGTGTAAGGCCCCTAGTTATAGAATTAATAGGAGTATTAGTAGAATATTAGTATGGTTATTAGTTGGGGCATATTAGTAAGTTGGTTAGGTCTTTTTGCTATAAATGTTGGAGAAAGGTTTGAAGAATTTTAGGGATATTTGTACGGATGGCTCGCCTCGAAATTTGGCCTCAAATTAAAAAACACTCGAAATTTAGCTTTCTGTTGATGTCATCATTGTGCAAAATAACCACTTTAACCCTTCTTCCTTCTCTTCTTCCGCCATTTCGCTCCCGCTATTTTTTTTCTTTTTTGTTCATCGTTTTTTCTGCTTTTCTTCGTCATCCTTCTTCAGGCATCTTCTTCGTCTTTTTTCATGCGTCTTTCTAGCAAGACGATTTTCGGAGATGTCGCTCTATTTATTTTAATTTTTTTTTTTCATTTTCAACGGTACCAGCGAGACTTTCATAATCAAAATGAGAAGAAGAAAACGACGCTGATCAGAAAGAGCGAGATCAGCGAGAGCAAGAGCAGCGAGATCAGCAAGAGCGAGATTGACGAGAGCGAGAGCGACTTGTTCTTGTTCTCGTTCCACACCAAACGCTACTTGTTCTCATTCTCGTTCAACGTCAGAAGCACGAGTTTGTTCTCGCCAGCTTTTTGCTGCTACTAATTAATGATCCTGTACGAATTTCCCATAAAATGCAAACAATTCTTACATAAATTCAAAACAAGTTAAGAAGGATTGAATGAATGAATGTGTATATAAAAAGAGATCAGCGAGAACGAGATCAGCGAGAGCGAGAGCGAGTTGGATTAGTCATTTAAGAGTGATTGTGAGATCATTAGTCTCGCTTCCCATTCGCATGCCTACAAATACATCTGAATGGTCGTTCTCGGTCTTGTTCCACACTAGACACACGTTATTGTTTAAAAATAAGTCTAAAATGTTTTTCCAAACGTCGCTCTTTCGAGTTCTCTTGCTTCCAAATCTCTCTCTCGTTTCTTCTTCTTCTGTGTGTTCTTGCTTTTCCCATATTCTCGCTCTTGTTGCTTCTTGTTGCTTCCCCCGAAATCTCTCTCTCGTTTCTTCTTGCTTCCCTGAATTCTCTCTCGTTCTAAATCTCTCTCTCATTTCACTATTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGGTGGTGGTCTTAGGCTTGTTGCTTCCCTTGAAATCTCTCTCTCGTTTCATTATTGGTCTCAGGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACAAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGAAAGAGAGACGTTTGGAAAAACATTTGAGACTAATTTTTAAACAATAACATGCGTCTGGTGTGGAACGAAACCGAGAACGACCAGCGAGATGTATTTGTAGGCACGCAAATGGGAAGCAAGACTAATGAACTCACAATCACTCTTAAATGACTAATCTAGCTCGCTCTTGCTCTCATCAATCTCACTCTCGTTCACGTTGATCTCTTTTTAGATACACATTCATTCATTCAATCCTTCTTAACTTGTTTTGAATTTAATGTTAGAATTGTTTGCATTTTATGGGAAATTCGTATAGGATCATTAATTAGCAGCAGCAGGCTGGCGGGAACGAAATCGTGCTCCTGACGTTGAACGGGAACAAGTAGCGTCTGGTGTGGAACGAGAACGAGTCGCCCTTGCTCTCGTCAATCTCGCTCTTTTTGATCAGCGTCGTTTTCTTCTTCTCATTCTGATTACGAAAGTCTCGTTGGTACCGTTAAATATGAAAAAAAAAAATAGAGCGACATCTTCGGAAATCGTCTCTCTGGGAAGACGCATGAAAAAAGACGAAGAAGATGCTTGAAGAAGGACGACGAAGAAAAGCAGAAAAAATGATGAACAAAAAAAAACAGCGGGAGCGAAATGGCGGAAGAAGGGTTAAAGTGGTAATTTCGCAGAGTGGTGACATCAACAGAAAGCCAAATTTCGAGTGTTTTTGAATTTGAGGTCAAATTTCAAGTGGACCTCTCAAAATGAGCCATCCGTACAAATATCCCAGAATTTTATGTGGGATTTCCTAATTGGGAATTTGGGAGAGGATTCTCAGCCCTCTGGAATGTGTTGAGGTATATTGTAATTTCTTCATTGATATTGCAATATAATTATATCTTTTAGTTTTCTTGTTTGTTCTTGAGTCCACTTGTTAGGAGGCACAGAATGACACATTGTTTTTGACTTTGTGCAAACAGGTATCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCGAGGTCGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGGTGATTTTTCTTTATTTTTGTCTTTGCTTTGTTAGTTTGCTAAGAAATTGTGTATTTTTACTTTATTGGCCTTTCCCACGTAGTTCAACAAACTTTTGTTTCTTTTATTCAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAATGCAGCCAGTGCCTTCCATTCTGGTTAATCTAATCTTAATGGCAATATAAGTCTTAGGAAAAATTGGACCTCTTAGATGGATGTAGAAGGTTTGGTGGAAAATGATACGATATTTGCTATGGAGCATGCTCTTTATGTTATTGAATACATAATCATTTTGTAGGTGTATGTGTTCATGTGATTTGGCTGTGTTGTTGTAAAAATTACACTCGATACCTAACTAAGTATTGTAATCTATTTTATTAAATATTTAGATTTTCTTTAATTCATGTTTAATGTTATGGAATTATAAATGATAATTTCATGGTGACTGAAAGGAATAGCTTCTGGTTTGTGTATATTGAGTATTTACTTTTTTCTGAAGTGTTATACTTGAGCCAATATATAAATATTATTAACATTTTGGTTTTAGTGAAGTGAAATCTAAATTACATGTAAATCCAGGTATTTTGGTTTGAGTTTATTGCCATTTCTGCGTTTTGGTATGCCTGTACTGAAATTCTTGGTAGGTTTTAACTGTAAGGTATTGTCTAACTTTGCCCACTTAACTTTTTGAAAACATTTTAAAAGTAGATTACAAAGAAAATTCATAAATGTATGGCATGCTTGAAATTTTCAAGAAGTAATTTCTTTTTTAAAAGAATTAATGATTGAAAATTTACTTCTTTGAGGGAGATGGTGCTTTCTAGTCCTGAGAGAAATTCATATTCTTGTGAGATAGTAGATAAAACATTTGTTGATCAGCATAGTGGCAGTTCTCTTTCAGAGGATCATTATAGGGGTTTCTATCAAAATTCAAGAATCTAGATACCTCATTTCTCTCATCTGGGCTCAAAGTTCTTATTTGGAATTGTGAGTCAACATGAGGGGATGAGGACTTGAACTTGAATCTCCAACTTTAAGGGAAGGAGTACATAATGATTACCTTGGAGTTATGCTCACTTTGGCAATTCTATTTGGAGTTTCCCATTTGTTTTACTATTCTTTGTATCATAAGATGAATTTGTTCATTTTCTTTTATTTTACCCTTCGTATTGGTGTTGTAAAATATATACGTTTGTTTGTGTATGCTATATGATCTATCTTTGGCTGCCTTGTAAAGATTTGGGATAAGTTGATGTAGTCATAGTTTTAGTTAGCAAGTAGTGTTTTTAAGTGAAATCCTTTTGTATAGACAATAAAATCACTCTGTTTATAATCCAGCTTTAATAGGACCTCCCGAAGCTTTTTGATTTTGTGCAACCACTAAGAATTTGAATTAAAGGAGGTTCTATAATGGTGATCGGTATAAGCATAGTACATCATA

mRNA sequence

TTTGTATTTGAAAACATAAAAAAGGGCTGTCCGTACGAAAATCCATTTTCACGTACAAGAAAATTCCACTTCTCTCTCTCGTGAAACTTCCAGCCCTCAACCCCCTCCCGATCTGCTGTTTTTCTCTTCTCCGGCCAGTATTTCCAAGAGCAGCTCACGCGATTAACCCTTCTGATCTGCTGTTTTTCTCTTCTCGCGGCGGAGGCGGCGGCGCCGTTTTACTAACCTCCTTCTGATTTACCCCTTCCTGGCAATTGCCGAGCTACACTAGCCCTCTTCGTCGACGCTGCTCAAACAGAAGGCGGTCCACACACCTTTCGTTTTCCAGCGGCGCTGCACCCTACAAAGTGACTCCTTTCCTGCAACCGACGCACGAGCACAACGCAGCCGACCTATCAAACCCACCCAATCGGACTCGAGCCAACAGCATATTAAAACTCGGAGGTCAGCTTTCGGCGGCTGCCCACGCTTCACTCGGCCGTGAAACGGACTACTCATAGGCTGTAGTGTTCGATTTTGTGAAATCGAACACAATCAAAACACTTTTCGACTCCTCTCGGGGTTTTGCATCTGAACTTGCAGAACAATCATGTTAGGAAGGTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGCTTGATGGTGGTGGTGGTGGTGGTGGTGGTCTTAGGCTTGTTGCTTCCCTTGAAATCTCTCTCTCGTTTCATTATTGGTCTCAGGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACAAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGAAAGAGAGACGTATCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCGAGGTCGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAATGCAGCCAGTGCCTTCCATTCTGGTTAATCTAATCTTAATGGCAATATAAGTCTTAGGAAAAATTGGACCTCTTAGATGGATGTAGAAGGTTTGGTGGAAAATGATACGATATTTGCTATGGAGCATGCTCTTTATGTTATTGAATACATAATCATTTTGTAGGTGTATGTGTTCATGTGATTTGGCTGTGTTGTTGTAAAAATTACACTCGATACCTAACTAAGTATTGTAATCTATTTTATTAAATATTTAGATTTTCTTTAATTCATGTTTAATGTTATGGAATTATAAATGATAATTTCATGGTGACTGAAAGGAATAGCTTCTGGTTTGTGTATATTGAGTATTTACTTTTTTCTGAAGTGTTATACTTGAGCCAATATATAAATATTATTAACATTTTGGTTTTAGTGAAGTGAAATCTAAATTACATGTAAATCCAGGTATTTTGGTTTGAGTTTATTGCCATTTCTGCGTTTTGGTATGCCTGTACTGAAATTCTTGGTAGGTTTTAACTGTAAGGTATTGTCTAACTTTGCCCACTTAACTTTTTGAAAACATTTTAAAAGTAGATTACAAAGAAAATTCATAAATGTATGGCATGCTTGAAATTTTCAAGAAGTAATTTCTTTTTTAAAAGAATTAATGATTGAAAATTTACTTCTTTGAGGGAGATGGTGCTTTCTAGTCCTGAGAGAAATTCATATTCTTGTGAGATAGTAGATAAAACATTTGTTGATCAGCATAGTGGCAGTTCTCTTTCAGAGGATCATTATAGGGGTTTCTATCAAAATTCAAGAATCTAGATACCTCATTTCTCTCATCTGGGCTCAAAGCAATTCTATTTGGAGTTTCCCATTTGTTTTACTATTCTTTGTATCATAAGATGAATTTGTTCATTTTCTTTTATTTTACCCTTCGTATTGGTGTTGTAAAATATATACGTTTGTTTGTGTATGCTATATGATCTATCTTTGGCTGCCTTGTAAAGATTTGGGATAAGTTGATGTAGTCATAGTTTTAGTTAGCAAGTAGTGTTTTTAAGTGAAATCCTTTTGTATAGACAATAAAATCACTCTGTTTATAATCCAGCTTTAATAGGACCTCCCGAAGCTTTTTGATTTTGTGCAACCACTAAGAATTTGAATTAAAGGAGGTTCTATAATGGTGATCGGTATAAGCATAGTACATCATA

Coding sequence (CDS)

ATGTTAGGAAGGTCAGATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGGGTAAGTGACAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCTGGCAAACCTAAAGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTCGTGAATCTTCATAACCGTACCTTGAAGTTTGCAGTATGCTTGATGGTGGTGGTGGTGGTGGTGGTGGTCTTAGGCTTGTTGCTTCCCTTGAAATCTCTCTCTCGTTTCATTATTGGTCTCAGGCTGGGTGGTGGTGGTCTTAGGCTTGATGGTGGTGGTGGTGGTGGTGATCTCAGGCTGGGTGGGGGAAGCAAGAAGAAACGAGAGAGAGATTTTGGGGGAAGCAACAAGAAGCAAAGAGAGCGAGAATATGGGAAAAGCAAGAACACATGGAAGAAGAAGAAACGAGAGAGAGATTTGGGGGGAAGCAAGAGAATTCGAAAGAGAGACGTATCTGGGCAAGACAAGCCTTCAGCAGTTAGCTATGCAATCACTTCATCATCAAATATATCTAATAAATCGAGGTCGCAGATTGTTCCGGGTTGCTCTAATGAAATATCTCAGTATTCCAATCGCTTTTCCACATCATGTAAATTTACAACATATTCTGAGAACCATCTAGAAGCGCTTCTTTACCCTGGTTTAGTTAACCAATATAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGCCAGAGGTATTCTGGGACAACTTTGGGTAGCCTTAGCCAACCTAAATCACGCCGCCATGATACGAGTTTTCCAGTAGATTATCCTCCTTACGACCTTTTGAACTAA

Protein sequence

MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLRLDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN

Homology

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BLAST of CaUC08G141750 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 302.4 bits (773), Expect = 4.4e-78
Identity = 177/292 (60.62%), Postives = 181/292 (61.99%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS+GCTIYVGN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           IANYAVKLFSGLVNLHNRTLKFA                                     
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS  S AITSSS ISNKSRSQI  G SNEISQYSNRFSTSC+FTTY ENHLE
Sbjct: 181 --VSGQDKPSPGSNAITSSS-ISNKSRSQIFSGYSNEISQYSNRFSTSCRFTTYPENHLE 192

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVD 293
           ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTL SL+QPKSRR DTSFPVD
Sbjct: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQPKSRRRDTSFPVD 192

[Close]

BLAST of CaUC08G141750 vs. NCBI nr
Match: XP_008459559.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 2.4e-76
Identity = 173/296 (58.45%), Postives = 178/296 (60.14%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           IANYAVKLFSGLVNLH RTLKFA                                     
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS VS AITSS      SRSQIV G SNEISQYSNRFS+SC+F TY ENHLE
Sbjct: 181 --VSGQDKPSPVSNAITSS------SRSQIVSGYSNEISQYSNRFSSSCRFPTYPENHLE 191

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY 297
           ALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 241 ALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 191

[Close]

BLAST of CaUC08G141750 vs. NCBI nr
Match: XP_023523852.1 (RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 1.5e-73
Identity = 163/300 (54.33%), Postives = 179/300 (59.67%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENHLE
Sbjct: 181 --VSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYRENHLE 201

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 300
           A  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 APPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVHYPPYELLN 201

[Close]

BLAST of CaUC08G141750 vs. NCBI nr
Match: XP_022973396.1 (RNA-binding protein 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 286.6 bits (732), Expect = 2.5e-73
Identity = 163/300 (54.33%), Postives = 179/300 (59.67%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENHLE
Sbjct: 181 --VSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHLE 201

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 300
           A  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 APPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CaUC08G141750 vs. NCBI nr
Match: XP_022932504.1 (RNA-binding protein 7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 285.4 bits (729), Expect = 5.6e-73
Identity = 162/300 (54.00%), Postives = 179/300 (59.67%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENH+E
Sbjct: 181 --VSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHVE 201

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 300
           A  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 APPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CaUC08G141750 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-13
Identity = 31/78 (39.74%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE A+
Sbjct: 9  RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ L+ + ++
Sbjct: 69 YAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CaUC08G141750 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-13
Identity = 31/78 (39.74%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE A+
Sbjct: 9  RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ L+ + ++
Sbjct: 69 YAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CaUC08G141750 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-13
Identity = 31/78 (39.74%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE A+
Sbjct: 9  RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ L+ + ++
Sbjct: 69 YAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of CaUC08G141750 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-12
Identity = 31/78 (39.74%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIYVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]

BLAST of CaUC08G141750 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 3.7e-11
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFS 71
          YA ++ +
Sbjct: 67 YACQILN 73

[Close]

BLAST of CaUC08G141750 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 173/296 (58.45%), Postives = 178/296 (60.14%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           IANYAVKLFSGLVNLH RTLKFA                                     
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS VS AITSS      SRSQIV G SNEISQYSNRFS+SC+F TY ENHLE
Sbjct: 181 --VSGQDKPSPVSNAITSS------SRSQIVSGYSNEISQYSNRFSSSCRFPTYPENHLE 191

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY 297
           ALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 241 ALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 191

[Close]

BLAST of CaUC08G141750 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 163/300 (54.33%), Postives = 179/300 (59.67%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENHLE
Sbjct: 181 --VSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHLE 201

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 300
           A  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 APPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CaUC08G141750 vs. ExPASy TrEMBL
Match: A0A6J1EX61 (RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.7e-73
Identity = 162/300 (54.00%), Postives = 179/300 (59.67%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS+GCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           I NYAVKLFSGLV LHNRTLKFA                                     
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS  S AITSSSNIS+KSRSQIVPG SNEIS YSNR S SC+F+ Y ENH+E
Sbjct: 181 --VSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEISSYSNRLSNSCRFSAYPENHVE 201

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 300
           A  YPGLVNQ NGYGS+ D++N +YSQRYSGT L S + PKSRRHDTS+PV YPPY+LLN
Sbjct: 241 APPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNHPKSRRHDTSYPVYYPPYELLN 201

[Close]

BLAST of CaUC08G141750 vs. ExPASy TrEMBL
Match: A0A5A7T7S6 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00940 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.8e-70
Identity = 162/284 (57.04%), Postives = 168/284 (59.15%), Query Frame = 0


Query: 13  GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLRLDGGGGGGDLRL 132
           VNLH RTLKFA                                                 
Sbjct: 163 VNLHKRTLKFA------------------------------------------------- 222

Query: 133 GGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRKRDVSGQDKPSAV 192
                                                             VSGQDKPS V
Sbjct: 223 --------------------------------------------------VSGQDKPSPV 281

Query: 193 SYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLEALLYPGLVNQYN 252
           S AITSS      SRSQIV G SNEISQY+NRFS+SC+F TY ENHLEALL PGLVNQ+N
Sbjct: 283 SNAITSS------SRSQIVSGYSNEISQYTNRFSSSCRFPTYPENHLEALLNPGLVNQFN 281

Query: 253 GYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPY 297
           GYGSHLDNYNKEYSQRYSGT L S +QPKSRRHD+SFPVDYPPY
Sbjct: 343 GYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPVDYPPY 281

[Close]

BLAST of CaUC08G141750 vs. ExPASy TrEMBL
Match: A0A6J1CKW6 (RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 6.3e-70
Identity = 159/300 (53.00%), Postives = 174/300 (58.00%), Query Frame = 0


Query: 1   MLGRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           M GRS+ CT+YVGNLD+RVSDRVLYDILIQAGR+VDLHIPRDKESGKPKG+AFAEYESEE
Sbjct: 1   MSGRSNCCTVYVGNLDDRVSDRVLYDILIQAGRLVDLHIPRDKESGKPKGYAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHNRTLKFAVCLMVVVVVVVVLGLLLPLKSLSRFIIGLRLGGGGLR 120
           IANYAVKLFSGLV LHNR LKFA                                     
Sbjct: 61  IANYAVKLFSGLVILHNRILKFA------------------------------------- 120

Query: 121 LDGGGGGGDLRLGGGSKKKRERDFGGSNKKQREREYGKSKNTWKKKKRERDLGGSKRIRK 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 RDVSGQDKPSAVSYAITSSSNISNKSRSQIVPGCSNEISQYSNRFSTSCKFTTYSENHLE 240
             VSGQDKPS  S AI SSSNIS+K RSQ VPG S+EISQYSNR STSC+F+ Y ENHLE
Sbjct: 181 --VSGQDKPSPSSIAINSSSNISHKLRSQFVPGYSSEISQYSNRLSTSCRFSAYPENHLE 201

Query: 241 ALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLGSLSQPKSRRHDTSFPVDYPPYDLLN 300
           A LYPGLVNQ NGYGSH+ NYN EYSQRY GTTL S +  + RR++TS PV YPPY+ LN
Sbjct: 241 APLYPGLVNQSNGYGSHMGNYNNEYSQRYCGTTLDSFNHSRPRRYETSNPVYYPPYEFLN 201

[Close]

BLAST of CaUC08G141750 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.9 bits (359), Expect = 4.2e-34
Identity = 65/80 (81.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 5  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          +  CT+Y+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EEIA+Y
Sbjct: 4  TSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADY 63

Query: 65 AVKLFSGLVNLHNRTLKFAV 85
          AVKLFSGLV+L+NRTLKFA+
Sbjct: 64 AVKLFSGLVSLYNRTLKFAI 83

[Close]

BLAST of CaUC08G141750 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-12
Identity = 28/78 (35.90%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 4  RSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   T+YVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64 YAVKLFSGLVNLHNRTLK 82
          YA+K+ + ++ LH + ++
Sbjct: 81 YAIKVLN-MIKLHGKPIR 97

[Close]

BLAST of CaUC08G141750 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 55.5 bits (132), Expect = 8.8e-08
Identity = 25/69 (36.23%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 3   GRSDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIA 62
           G   G  +YVGNL   V D  L  +  + G+VV+  +  D++SG+ KGF F  Y+S +  
Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEV 258

Query: 63  NYAVKLFSG 72
             A+K   G
Sbjct: 259 QNAIKSLDG 267

[Close]

BLAST of CaUC08G141750 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-07
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 5  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65 AVKLFSG-LVNLHNRTLKFA 84
          AV+   G +V+    T++FA
Sbjct: 73 AVERLDGRVVDGREITVQFA 92

[Close]

BLAST of CaUC08G141750 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-07
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 5  SDGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          SD  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65 AVKLFSG-LVNLHNRTLKFA 84
          AV+   G +V+    T++FA
Sbjct: 73 AVERLDGRVVDGREITVQFA 92

The following BLAST results are available for this feature:

BLAST of CaUC08G141750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890192.1	4.4e-78	60.62	RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi...	[more]
XP_008459559.1	2.4e-76	58.45	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 ...	[more]
XP_023523852.1	1.5e-73	54.33	RNA-binding protein 7-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022973396.1	2.5e-73	54.33	RNA-binding protein 7-like isoform X1 [Cucurbita maxima]	[more]
XP_022932504.1	5.6e-73	54.00	RNA-binding protein 7 isoform X1 [Cucurbita moschata]	[more]

BLAST of CaUC08G141750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	6.8e-13	39.74	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	6.8e-13	39.74	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	6.8e-13	39.74	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	1.5e-12	39.74	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	3.7e-11	43.28	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of CaUC08G141750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAZ4	1.2e-76	58.45	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A6J1I8J0	1.2e-73	54.33	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]
A0A6J1EX61	2.7e-73	54.00	RNA-binding protein 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438905 P...	[more]
A0A5A7T7S6	4.8e-70	57.04	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1CKW6	6.3e-70	53.00	RNA-binding protein 7 OS=Momordica charantia OX=3673 GN=LOC111012090 PE=4 SV=1	[more]

BLAST of CaUC08G141750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	4.2e-34	81.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	1.5e-12	35.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	8.8e-08	36.23	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	4.4e-07	36.25	ortholog of human splicing factor SC35	[more]
AT5G64200.2	4.4e-07	36.25	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..83 e-value: 1.3E-17 score: 74.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..80 e-value: 5.1E-14 score: 51.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..82 score: 14.47054
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..188 e-value: 6.0E-19 score: 70.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..186
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..296
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..296
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G141750.1	CaUC08G141750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding