CaUC08G141490 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC08G141490
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationCiama_Chr08: 1115532 .. 1117091 (+)
RNA-Seq ExpressionCaUC08G141490
SyntenyCaUC08G141490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCCTGCCATAATGCATACGTTCCACGACCTAGTCACTGGCGGGCATTCAAGATATCTACGAACATATAAACGCTTAATAGGGAAGTTGTATTGGAAACAAATGAAGGCTGATGTCAAGAAATATGTGGAAGAATGTATGGCGTGCCAACAAAATAAGACAGATTCTCCCACTCCCACTGAACTTCTGCAACCTTTACCTATTCTTGAGCAAGTATGGGATAATTTAACCATGGATTTTGTAGAAGGGTTACCGAAGGCAGGAGGATATGACTCGATTACGATAGTGGTTGATCGACTAAGCAAGTATGCTCATTTCGTTACTTTGTCTCATTTGTATACTGCAAAGCAAGTGGCTGAGATTTTCATCCGGGAAGTTGTGCGGCATTACGATATTCCTAAATCAATTATCTCTAATAGGAAAAAGATATTTTTAAGTCATTTCTAGGTGGAATTATTTCGAATGCAGGGGACTATGTTAAAAAGGAGTACGACTTTCCACCCTCACACGAATGGCAATCGTTGCCTGGAAACCTACCTAAGGTGTTTTTGCAATGAGAGGTCAAAGCAACGGGACAAGTGGTTACCATGGACCGAACATTGGTATAACACCACATTTCCCATCTCTATCAATACTACTTTTTCAATGTTTTTCAAAAGGAAACCTCCTCCTTAGATATTTTATGGTGAGAGGAAAATGAGTAATGATGCGATAGAGCAAACGCTGAAGGCGAGGGATGAAATATTGAAAAGACTCAAGAAACACTTGTTGATTCCCCAAAACCGAATGAAGAAGTTTGCAGACTCAAATCGTAGGAGGTTCAGTTGGAAGTTGGGGAGGAAGTCTTTCTCAAAATTCGACCATACAGGCACTGGCCAAGCGTTGGAATGAAATACTATCTCCTAAATTCTATAGGTCTTATAAGGTATTGGAGAAAATAGGTGAAGTGGCCTACTAGATTGACTTGCCTGAAGAAGCCACCAATCATGATGTTTTCCATGTCTTGCAACTTAAAAGAATGATTGGGAAGAAACAGGTAGTTCAAAGCCAACTTCCAACTTTGATGGAGGATTTCGAGGTGCAAACTTCAACTGAAACAGTGTTGGTCACAAGGTTGAATGGGGATATCTCAATGAATGAGTGGTTGGTGAAACGGCAGAATCTTCCCAAGAATGAAGCTATGTGGGAGTACAGTGACTTTATGAAGCAGTAGTTTTCAGATTTTCACCTTGAGGACTAGGTGAATTTGGAGGAAGGGTGTATTGTTAGACCCCCAATGCATTATACATATTATAGGAGGGGTAAGAAAGGAAATTCCAGGAGAGAAGGATAATGGAAGGAGAATGGGAAGCGGTGAGGCCGTTGGGACCACCTGGGGCCCATGAGGTGGGTTTAAGAAAGGGGTTTACTGAGAGGAGGGGGCATCTTGCTTTTGATGAATTTTTGAAGCTGAAGGCTAAAGAAGGTGGAGAGAATTCCAGCTCTCTCTCGAATGTGCTGGGGATTGTTCTTATTTTGAGTCCTTTGTTTATTTTATTGCTTTCCTTGAGATTGTAG

mRNA sequence

ATGATCCCTGCCATAATGCATACGTTCCACGACCTAGTCACTGGCGGGCATTCAAGATATCTACGAACATATAAACGCTTAATAGGGAAGTTGTATTGGAAACAAATGAAGGCTGATGTCAAGAAATATGTGGAAGAATGTATGGCGTGCCAACAAAATAAGACAGATTCTCCCACTCCCACTGAACTTCTGCAACCTTTACCTATTCTTGAGCAAGTATGGGATAATTTAACCATGGATTTTGTAGAAGGGTTACCGAAGGCAGGAGGATATGACTCGATTACGATAGTGGTTGATCGACTAAGCAAGTATGCTCATTTCGTTACTTTGTCTCATTTGTATACTGCAAAGCAAGTGGCTGAGATTTTCATCCGGGAAGTTGTGCGGCATTACGGGGACTATGTTAAAAAGGAGTACGACTTTCCACCCTCACACGAATGGCAATCGTTGCCTGGAAACCTACCTAAGGAGAGAAGGATAATGGAAGGAGAATGGGAAGCGGTGAGGCCGTTGGGACCACCTGGGGCCCATGAGGTGGGTTTAAGAAAGGGGTTTACTGAGAGGAGGGGGCATCTTGCTTTTGATGAATTTTTGAAGCTGAAGGCTAAAGAAGGTGGAGAGAATTCCAGCTCTCTCTCGAATGTGCTGGGGATTGTTCTTATTTTGAGTCCTTTGTTTATTTTATTGCTTTCCTTGAGATTGTAG

Coding sequence (CDS)

ATGATCCCTGCCATAATGCATACGTTCCACGACCTAGTCACTGGCGGGCATTCAAGATATCTACGAACATATAAACGCTTAATAGGGAAGTTGTATTGGAAACAAATGAAGGCTGATGTCAAGAAATATGTGGAAGAATGTATGGCGTGCCAACAAAATAAGACAGATTCTCCCACTCCCACTGAACTTCTGCAACCTTTACCTATTCTTGAGCAAGTATGGGATAATTTAACCATGGATTTTGTAGAAGGGTTACCGAAGGCAGGAGGATATGACTCGATTACGATAGTGGTTGATCGACTAAGCAAGTATGCTCATTTCGTTACTTTGTCTCATTTGTATACTGCAAAGCAAGTGGCTGAGATTTTCATCCGGGAAGTTGTGCGGCATTACGGGGACTATGTTAAAAAGGAGTACGACTTTCCACCCTCACACGAATGGCAATCGTTGCCTGGAAACCTACCTAAGGAGAGAAGGATAATGGAAGGAGAATGGGAAGCGGTGAGGCCGTTGGGACCACCTGGGGCCCATGAGGTGGGTTTAAGAAAGGGGTTTACTGAGAGGAGGGGGCATCTTGCTTTTGATGAATTTTTGAAGCTGAAGGCTAAAGAAGGTGGAGAGAATTCCAGCTCTCTCTCGAATGTGCTGGGGATTGTTCTTATTTTGAGTCCTTTGTTTATTTTATTGCTTTCCTTGAGATTGTAG

Protein sequence

MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVAEIFIREVVRHYGDYVKKEYDFPPSHEWQSLPGNLPKERRIMEGEWEAVRPLGPPGAHEVGLRKGFTERRGHLAFDEFLKLKAKEGGENSSSLSNVLGIVLILSPLFILLLSLRL
Homology
[Close]
BLAST of CaUC08G141490 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1100 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1159

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1160 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1219

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1220 EVFVKEVVRLHG 1231

[Close]
BLAST of CaUC08G141490 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1160 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1219

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1220 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1279

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1280 EVFVKEVVRLHG 1291

[Close]
BLAST of CaUC08G141490 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1100 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKRDVQKYCEECMICQKNKSSALSP 1159

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1160 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1219

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1220 EVFVKEVVRLHG 1231

[Close]
BLAST of CaUC08G141490 vs. NCBI nr
Match: KAA0049630.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1160 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1219

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1220 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1279

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1280 EVFVKEVVRLHG 1291

[Close]
BLAST of CaUC08G141490 vs. NCBI nr
Match: KAA0025132.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1420 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1479

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1480 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1539

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1540 EVFVKEVVRLHG 1551

[Close]
BLAST of CaUC08G141490 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-17
Identity = 39/107 (36.45%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 27   LIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTELLQPLPILEQVWDNLTMDFVEGLP 86
            ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP+P  E+ W++L+MDF+  LP
Sbjct: 937  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 996

Query: 87   KAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVAEIFIREVVRHYGD 134
            ++ GY+++ +VVDR SK A  V  +   TA+Q A +F + V+ ++G+
Sbjct: 997  ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1043

[Close]
BLAST of CaUC08G141490 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-17
Identity = 39/107 (36.45%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 27   LIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTELLQPLPILEQVWDNLTMDFVEGLP 86
            ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP+P  E+ W++L+MDF+  LP
Sbjct: 937  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 996

Query: 87   KAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVAEIFIREVVRHYGD 134
            ++ GY+++ +VVDR SK A  V  +   TA+Q A +F + V+ ++G+
Sbjct: 997  ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1043

[Close]
BLAST of CaUC08G141490 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-17
Identity = 39/107 (36.45%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 27   LIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTELLQPLPILEQVWDNLTMDFVEGLP 86
            ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP+P  E+ W++L+MDF+  LP
Sbjct: 937  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 996

Query: 87   KAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVAEIFIREVVRHYGD 134
            ++ GY+++ +VVDR SK A  V  +   TA+Q A +F + V+ ++G+
Sbjct: 997  ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1043

[Close]
BLAST of CaUC08G141490 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-17
Identity = 39/107 (36.45%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 27   LIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTELLQPLPILEQVWDNLTMDFVEGLP 86
            ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP+P  E+ W++L+MDF+  LP
Sbjct: 937  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 996

Query: 87   KAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVAEIFIREVVRHYGD 134
            ++ GY+++ +VVDR SK A  V  +   TA+Q A +F + V+ ++G+
Sbjct: 997  ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1043

[Close]
BLAST of CaUC08G141490 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-17
Identity = 39/107 (36.45%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 27   LIGKLYWKQMKADVKKYVEECMACQQNKTDSPTPTELLQPLPILEQVWDNLTMDFVEGLP 86
            ++ +  WK ++  +++YV+ C  CQ NK+ +  P   LQP+P  E+ W++L+MDF+  LP
Sbjct: 937  ILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALP 996

Query: 87   KAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVAEIFIREVVRHYGD 134
            ++ GY+++ +VVDR SK A  V  +   TA+Q A +F + V+ ++G+
Sbjct: 997  ESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGN 1043

[Close]
BLAST of CaUC08G141490 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1160 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1219

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1220 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1279

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1280 EVFVKEVVRLHG 1291

[Close]
BLAST of CaUC08G141490 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1160 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1219

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1220 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1279

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1280 EVFVKEVVRLHG 1291

[Close]
BLAST of CaUC08G141490 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1100 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1159

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1160 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1219

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1220 EVFVKEVVRLHG 1231

[Close]
BLAST of CaUC08G141490 vs. ExPASy TrEMBL
Match: A0A5A7U6J3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001310 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1100 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKRDVQKYCEECMICQKNKSSALSP 1159

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1160 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1219

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1220 EVFVKEVVRLHG 1231

[Close]
BLAST of CaUC08G141490 vs. ExPASy TrEMBL
Match: A0A5A7SIV7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00310 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = 0 

Query: 1    MIPAIMHTFHDLVTGGHSRYLRTYKRLIGKLYWKQMKADVKKYVEECMACQQNKTDSPTP 60
            +IP IMHT+HD V GGHS +LRTYKR+ G+LYWK MK DV+KY EECM CQ+NK+ + +P
Sbjct: 1420 LIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSP 1479

Query: 61   TELLQPLPILEQVWDNLTMDFVEGLPKAGGYDSITIVVDRLSKYAHFVTLSHLYTAKQVA 120
              LL PL I + +W +++MDF+EGLPK+ G++ I +VVDRLSKYAHF+TL H YTAK VA
Sbjct: 1480 AGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVA 1539

Query: 121  EIFIREVVRHYG 133
            E+F++EVVR +G
Sbjct: 1540 EVFVKEVVRLHG 1551

The following BLAST results are available for this feature:
BLAST of CaUC08G141490 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23090.15.2e-4262.12Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK15990.15.2e-4262.12Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049776.15.2e-4262.12Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049630.15.2e-4262.12Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025132.15.2e-4262.12Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of CaUC08G141490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9UR074.6e-1736.45Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT414.6e-1736.45Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT344.6e-1736.45Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT354.6e-1736.45Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT364.6e-1736.45Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CaUC08G141490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CXB12.5e-4262.12Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U2S12.5e-4262.12Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DI732.5e-4262.12Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U6J32.5e-4262.12Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SIV72.5e-4262.12Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of CaUC08G141490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 2..55
e-value: 3.3E-15
score: 55.9
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 66..139
e-value: 5.7E-9
score: 37.5
NoneNo IPR availableGENE3D1.10.340.70coord: 1..54
e-value: 2.3E-12
score: 49.0
NoneNo IPR availablePANTHERPTHR45835YALI0A06105Pcoord: 5..132
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 66..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC08G141490.1CaUC08G141490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding