CaUC08G141150 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC08G141150
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Ty1-copia retrotransposon protein
Location	Ciama_Chr08: 303746 .. 304987 (-)
RNA-Seq Expression	CaUC08G141150
Synteny	CaUC08G141150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGGTATAAATATGAAGGCTTGCTAAAGGGGCTTCTAACTTGTAGATGTGGTGGAAATAGAAACTTTCTCTACAAGCACGCCGCCGCTTGTCCTGATGGGTTCAGGTAACCACGTTCTAATTTTTACTACCTTTCTATTTTAAAATTTTATCATTTCTTTTTTTTTTTTAATTAAAACGTTTATATTAAGTTAAGATCCATAAATCTAATTAAATTTTTTCCCATTTTGATCCACCGCTCCTTTTTCTTCTTCTTCATATACCATGAGTTTTTCAGAAAAATATACAAACATTTTTTCTACCAGATTTTCTTCCTTTATTTTCTTTTGACACGTTTATGAGCATAGTTTCCGATGGTTCCATTCATTCATCTAGCGAGTGAACGCTTGAGTTGGAAAATTGTGTTAACCTTGGGGAGCAATTGACATTCGCAATTTAGCACCGTGGTCGCGCTGAATTTTGCTTTCAATGTAGTGGTTCTTCCATAGCACAACAACATGACATTTGATTGCAACAATTTGAAAGAAAAAATATATCTTTTTATCCCTTTTCTTCCAAATGTCTATTAGAAACGATACGATCCTTCCCGATCTGTCTAAATTGGAGCCACTGGACAGATCAAACTATCGACACTGGTCTCATAAGCTCATATGATTGTCTTCAAGCAACTAGAGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGGTTGCAGATCCAACAGAAGCTAGTCAGTGCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGGTGCAAAAATTAGCAAAGATAACTTGAGACACTTTGGAATCCAGGTATGGAGGAGATGATGCGGGTAGAAAAAAAAATACATTGTTAGCAAATAACTACAGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTCTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCTGTTGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

mRNA sequence

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTCTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCTGTTGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

Coding sequence (CDS)

ATGGGAAAGGAGTTGTCTCACATTGGAAGTTTTAGCAATGCCAAAAGGATCGATTATATCCTCACCTCCACCAAATCTGATAAAGGTAAGGATGATGTGATTATCGATTCAGACAGTTCCAAAGTTGTAGATCTAGATAGATCCAAGTTTGATCATGTAGCCGATTCAGTCAAGTATGAGAAAGATAACAAAACAATACATTGTCATCTTCTCAACCACATGAATGATTCGTTATTTGATTTGTTCATGTTCTGGATGATGGATGACAAGCGATTATGGACCAGGTCTCACGAGTACAAGAATCTGGTAGCAAATGTGTTGGCTAAAGTTATGAAGATGTGTGAGATTCTTCAAGCAAACCTGTTGCTCACGAAATTCCCACCTTCTTGGAGTGACTACCGTAACCATTTGAAGTATAAAAAGGATCTAACCCTCTAG

Protein sequence

MGKELSHIGSFSNAKRIDYILTSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDLFMFWMMDDKRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKYKKDLTL

Homology

[Close]

BLAST of CaUC08G141150 vs. NCBI nr
Match: XP_016902586.1 (PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 77/158 (48.73%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 22  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDL 81
           TST SD           S+ VV  D+ K D VAD  KY KDNKT+  HLLNHM+D +FDL
Sbjct: 16  TSTSSDPESS----TGPSTTVVVADQVKKDQVADPEKYAKDNKTVRGHLLNHMSDPMFDL 75

Query: 82  FM---------------------------------FWMMDDKRLWTRSHEYKNLVANVLA 141
           F+                                 F M DDK +  + HEY+NLVANVL+
Sbjct: 76  FVVQKFVKDIWSTLESRYGGDDVARKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLS 135

Query: 142 KVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           + MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 136 EGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 169

[Close]

BLAST of CaUC08G141150 vs. NCBI nr
Match: XP_022150382.1 (uncharacterized protein LOC111018559 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-24
Identity = 69/127 (54.33%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 53  VADSVKYEKDNKTIHCHLLNHMNDSLFDLFM----------------------------- 112
           VA + K++KDNKTIH HLLNHMN+SLFD F+                             
Sbjct: 90  VAAADKFKKDNKTIHEHLLNHMNNSLFDFFVTKKSAKIMWDTLESRYGGDDAGRKKYVVG 149

Query: 113 ----FWMMDDKRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY 146
               F M DDK +  + HEYKNLVANVL++ MKMCEILQ NLLL KFPP WSDYRNHLK+
Sbjct: 150 KWLQFQMADDKSIMDQVHEYKNLVANVLSEGMKMCEILQTNLLLEKFPPFWSDYRNHLKH 209

[Close]

BLAST of CaUC08G141150 vs. NCBI nr
Match: KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24
Identity = 77/178 (43.26%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CaUC08G141150 vs. NCBI nr
Match: TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-24
Identity = 77/178 (43.26%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CaUC08G141150 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-24
Identity = 76/177 (42.94%), Postives = 94/177 (53.11%), Query Frame = 0


Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
           NKT+  HLLNHM+D +FDLF+                                 F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

[Close]

BLAST of CaUC08G141150 vs. ExPASy TrEMBL
Match: A0A1S4E2X9 (uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.1e-25
Identity = 77/158 (48.73%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 22  TSTKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKDNKTIHCHLLNHMNDSLFDL 81
           TST SD           S+ VV  D+ K D VAD  KY KDNKT+  HLLNHM+D +FDL
Sbjct: 16  TSTSSDPESS----TGPSTTVVVADQVKKDQVADPEKYAKDNKTVRGHLLNHMSDPMFDL 75

Query: 82  FM---------------------------------FWMMDDKRLWTRSHEYKNLVANVLA 141
           F+                                 F M DDK +  + HEY+NLVANVL+
Sbjct: 76  FVVQKFVKDIWSTLESRYGGDDVARKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLS 135

Query: 142 KVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           + MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 136 EGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 169

[Close]

BLAST of CaUC08G141150 vs. ExPASy TrEMBL
Match: A0A6J1DAK7 (uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018559 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 69/127 (54.33%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 53  VADSVKYEKDNKTIHCHLLNHMNDSLFDLFM----------------------------- 112
           VA + K++KDNKTIH HLLNHMN+SLFD F+                             
Sbjct: 90  VAAADKFKKDNKTIHEHLLNHMNNSLFDFFVTKKSAKIMWDTLESRYGGDDAGRKKYVVG 149

Query: 113 ----FWMMDDKRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY 146
               F M DDK +  + HEYKNLVANVL++ MKMCEILQ NLLL KFPP WSDYRNHLK+
Sbjct: 150 KWLQFQMADDKSIMDQVHEYKNLVANVLSEGMKMCEILQTNLLLEKFPPFWSDYRNHLKH 209

[Close]

BLAST of CaUC08G141150 vs. ExPASy TrEMBL
Match: A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 77/178 (43.26%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CaUC08G141150 vs. ExPASy TrEMBL
Match: A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 77/178 (43.26%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 11  FSNAKRIDYILTS---TKSDKGKDDVIIDSDSSKVV------DLDRSKFDHVADSVKYEK 70
           F     +DYILT+   T           D +SS+++        ++ K D V D  KY K
Sbjct: 34  FFEQLEVDYILTTDLPTSDPPTTTSTSSDPESSRIIYGAVLAVTEQVKKDQVIDPEKYAK 93

Query: 71  DNKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMD 130
           DNKT+  HLLNHM+D +FDLF+                                 F M D
Sbjct: 94  DNKTVRAHLLNHMSDPMFDLFIIQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTD 153

Query: 131 DKRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           DK +  + HEY+NLVANVL++ MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 DKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 211

[Close]

BLAST of CaUC08G141150 vs. ExPASy TrEMBL
Match: A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 76/177 (42.94%), Postives = 94/177 (53.11%), Query Frame = 0


Query: 11  FSNAKRIDYILTS--------TKSDKGKDDVIIDSDSSKVVDLDRSKFDHVADSVKYEKD 70
           F     +DY+LT+        T +    D        + V   D+ K D V D  KY KD
Sbjct: 34  FFEQLEVDYVLTTDLPTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKD 93

Query: 71  NKTIHCHLLNHMNDSLFDLFM---------------------------------FWMMDD 130
           NKT+  HLLNHM+D +FDLF+                                 F M DD
Sbjct: 94  NKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDD 153

Query: 131 KRLWTRSHEYKNLVANVLAKVMKMCEILQANLLLTKFPPSWSDYRNHLKY-KKDLTL 146
           K +  + HEY+NLVANVL++ MKMCEILQAN+LL KFPPSW+DYRNHLK+ KKDL L
Sbjct: 154 KPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKL 210

The following BLAST results are available for this feature:

BLAST of CaUC08G141150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902586.1	1.0e-24	48.73	PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo]	[more]
XP_022150382.1	2.3e-24	54.33	uncharacterized protein LOC111018559 [Momordica charantia]	[more]
KAA0040554.1	3.0e-24	43.26	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05597.1	3.0e-24	43.26	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	4.0e-24	42.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CaUC08G141150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC08G141150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E2X9	5.1e-25	48.73	uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=...	[more]
A0A6J1DAK7	1.1e-24	54.33	uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5D3C1A6	1.5e-24	43.26	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TAR9	1.5e-24	43.26	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U9X9	1.9e-24	42.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CaUC08G141150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 53..142
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 53..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC08G141150.1	CaUC08G141150.1	mRNA