CaUC07G139440 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G139440
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	disease resistance protein RGA2-like
Location	Ciama_Chr07: 30234448 .. 30234886 (-)
RNA-Seq Expression	CaUC07G139440
Synteny	CaUC07G139440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTTGCAAGTTTATGATTGTGAGTCCTCTCATCCATTTTGGATCACTTGAAAATGTTGTAATGGTTGATTTAAGGAGTGGTGCATCACAACTTCCTCGACAACTCGAGCACCTCACAGCTTTGATATCATCGCATATTTCGTATTTTGATGACGTTGAAGCTCTATTTGAATGGTTCGAAAACTTCACGTCTTTGGAAACATTAAAGCTTTAAAATTGCAAAATTTTGAAAAGCTTCGTCCCATGAAGCCATGTCAAATTTGATCAGATTACATAATCTGTGTCTACGAGTTTATCGATGTTTGCAGCTTGGACTTGACAATGGTTGTTTTGAGGTGGTGAAGACTTGCCATGAGAGTATCCATTTTAAAAAGTCATCTCTAATACCTAGTATTAGCATTGAAAATTTTGTTGCAATTGAATCACAAGAATGA

mRNA sequence

ATGGAGACTTGCAAGTTTATGATTGTGAGTCCTCTCATCCATTTTGGATCACTTGAAAATGTTGTAATGGTTGATTTAAGGAGTGGTGCATCACAACTTCCTCGACAACTCGAGCACCTCACAGCTTTGATATCATCGCATATTTCGTATTTTGATGACGTTGAAGCTCTATTTGAATGGTTCGAAAACTTCACGTCTTTGGAAACATTAAAGCTTGGACTTGACAATGGTTGTTTTGAGGTGGTGAAGACTTGCCATGAGAGTATCCATTTTAAAAAGTCATCTCTAATACCTAGTATTAGCATTGAAAATTTTGTTGCAATTGAATCACAAGAATGA

Coding sequence (CDS)

ATGGAGACTTGCAAGTTTATGATTGTGAGTCCTCTCATCCATTTTGGATCACTTGAAAATGTTGTAATGGTTGATTTAAGGAGTGGTGCATCACAACTTCCTCGACAACTCGAGCACCTCACAGCTTTGATATCATCGCATATTTCGTATTTTGATGACGTTGAAGCTCTATTTGAATGGTTCGAAAACTTCACGTCTTTGGAAACATTAAAGCTTGGACTTGACAATGGTTGTTTTGAGGTGGTGAAGACTTGCCATGAGAGTATCCATTTTAAAAAGTCATCTCTAATACCTAGTATTAGCATTGAAAATTTTGTTGCAATTGAATCACAAGAATGA

Protein sequence

METCKFMIVSPLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLETLKLGLDNGCFEVVKTCHESIHFKKSSLIPSISIENFVAIESQE

Homology

[Close]

BLAST of CaUC07G139440 vs. NCBI nr
Match: XP_022979680.1 (putative disease resistance protein RGA3 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-16
Identity = 57/114 (50.00%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 10   SPLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLET 69
            SPLIH  SLEN+V+  L S A+QLP++LEHLTAL S HIS+FDDVEAL EWF NFTSLE 
Sbjct: 955  SPLIHLRSLENLVLAHLGSDAAQLPQELEHLTALRSLHISHFDDVEALPEWFGNFTSLEI 1014

Query: 70   LK--------------------------------LGLDNGCFEVVKTCHESIHF 92
            LK                                L L  GCFE VKT + SI F
Sbjct: 1015 LKLYNCRNLKNLPSQKALSKLVRLSSLRVYGCSQLELGKGCFEQVKTSNGSIEF 1068

[Close]

BLAST of CaUC07G139440 vs. NCBI nr
Match: XP_023527716.1 (putative disease resistance protein RGA3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 6.9e-16
Identity = 58/121 (47.93%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 10   SPLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLET 69
            SPLIH  SLEN+V+    S A+QLP++LEHLTAL S HIS+FDDVEAL EWF NFTSLE 
Sbjct: 955  SPLIHLRSLENLVLAHSGSDAAQLPQELEHLTALRSLHISHFDDVEALPEWFGNFTSLEI 1014

Query: 70   LK--------------------------------LGLDNGCFEVVKTCHESIHFKKSSLI 99
            LK                                L L  GCFE VKT + SI F +   I
Sbjct: 1015 LKLYNCRNLKNLPSQKALSNLVRLSSLRVYGCSQLELGKGCFEQVKTSNGSIKFVQEIHI 1074

[Close]

BLAST of CaUC07G139440 vs. NCBI nr
Match: XP_022955642.1 (uncharacterized protein LOC111457584 isoform X2 [Cucurbita moschata])

HSP 1 Score: 90.5 bits (223), Expect = 9.9e-15
Identity = 55/113 (48.67%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 11  PLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLETL 70
           PLIH  SLEN+V+V   S A+QLP++LEHLT L S HIS+FDDVEAL EWF NFTSLE L
Sbjct: 200 PLIHLRSLENLVLVHSGSDAAQLPQELEHLTTLRSLHISHFDDVEALPEWFGNFTSLEIL 259

Query: 71  K--------------------------------LGLDNGCFEVVKTCHESIHF 92
           K                                L L  GCFE VKT + SI F
Sbjct: 260 KLYNCRNLKNLPSQKALSNLVRLSSLRVYGCSQLELGTGCFEQVKTSNGSIKF 312

[Close]

BLAST of CaUC07G139440 vs. NCBI nr
Match: XP_022955641.1 (putative disease resistance protein RGA3 isoform X1 [Cucurbita moschata])

HSP 1 Score: 90.5 bits (223), Expect = 9.9e-15
Identity = 55/113 (48.67%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 11  PLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLETL 70
           PLIH  SLEN+V+V   S A+QLP++LEHLT L S HIS+FDDVEAL EWF NFTSLE L
Sbjct: 494 PLIHLRSLENLVLVHSGSDAAQLPQELEHLTTLRSLHISHFDDVEALPEWFGNFTSLEIL 553

Query: 71  K--------------------------------LGLDNGCFEVVKTCHESIHF 92
           K                                L L  GCFE VKT + SI F
Sbjct: 554 KLYNCRNLKNLPSQKALSNLVRLSSLRVYGCSQLELGTGCFEQVKTSNGSIKF 606

[Close]

BLAST of CaUC07G139440 vs. NCBI nr
Match: XP_004152292.1 (putative disease resistance protein RGA3 [Cucumis sativus] >KGN53094.1 hypothetical protein Csa_014593 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 10   SPLIHFGSLENVVMVDL-RSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLE 69
            SPL+H GSLEN+V+VDL  SGA QLP+QLE LT+L S HIS+F  +EAL EWF NFT LE
Sbjct: 973  SPLVHLGSLENLVLVDLDGSGAIQLPQQLEQLTSLRSLHISHFSGIEALPEWFGNFTCLE 1032

Query: 70   TLKL 73
            TLKL
Sbjct: 1033 TLKL 1036

[Close]

BLAST of CaUC07G139440 vs. ExPASy TrEMBL
Match: A0A6J1ITZ8 (putative disease resistance protein RGA3 OS=Cucurbita maxima OX=3661 GN=LOC111479330 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 57/114 (50.00%), Postives = 64/114 (56.14%), Query Frame = 0


Query: 10   SPLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLET 69
            SPLIH  SLEN+V+  L S A+QLP++LEHLTAL S HIS+FDDVEAL EWF NFTSLE 
Sbjct: 955  SPLIHLRSLENLVLAHLGSDAAQLPQELEHLTALRSLHISHFDDVEALPEWFGNFTSLEI 1014

Query: 70   LK--------------------------------LGLDNGCFEVVKTCHESIHF 92
            LK                                L L  GCFE VKT + SI F
Sbjct: 1015 LKLYNCRNLKNLPSQKALSKLVRLSSLRVYGCSQLELGKGCFEQVKTSNGSIEF 1068

[Close]

BLAST of CaUC07G139440 vs. ExPASy TrEMBL
Match: A0A6J1GU74 (uncharacterized protein LOC111457584 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457584 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.8e-15
Identity = 55/113 (48.67%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 11  PLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLETL 70
           PLIH  SLEN+V+V   S A+QLP++LEHLT L S HIS+FDDVEAL EWF NFTSLE L
Sbjct: 200 PLIHLRSLENLVLVHSGSDAAQLPQELEHLTTLRSLHISHFDDVEALPEWFGNFTSLEIL 259

Query: 71  K--------------------------------LGLDNGCFEVVKTCHESIHF 92
           K                                L L  GCFE VKT + SI F
Sbjct: 260 KLYNCRNLKNLPSQKALSNLVRLSSLRVYGCSQLELGTGCFEQVKTSNGSIKF 312

[Close]

BLAST of CaUC07G139440 vs. ExPASy TrEMBL
Match: A0A6J1GUB9 (putative disease resistance protein RGA3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457584 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.8e-15
Identity = 55/113 (48.67%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 11  PLIHFGSLENVVMVDLRSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLETL 70
           PLIH  SLEN+V+V   S A+QLP++LEHLT L S HIS+FDDVEAL EWF NFTSLE L
Sbjct: 494 PLIHLRSLENLVLVHSGSDAAQLPQELEHLTTLRSLHISHFDDVEALPEWFGNFTSLEIL 553

Query: 71  K--------------------------------LGLDNGCFEVVKTCHESIHF 92
           K                                L L  GCFE VKT + SI F
Sbjct: 554 KLYNCRNLKNLPSQKALSNLVRLSSLRVYGCSQLELGTGCFEQVKTSNGSIKF 606

[Close]

BLAST of CaUC07G139440 vs. ExPASy TrEMBL
Match: A0A0A0KW56 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015840 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-14
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 10   SPLIHFGSLENVVMVDL-RSGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLE 69
            SPL+H GSLEN+V+VDL  SGA QLP+QLE LT+L S HIS+F  +EAL EWF NFT LE
Sbjct: 973  SPLVHLGSLENLVLVDLDGSGAIQLPQQLEQLTSLRSLHISHFSGIEALPEWFGNFTCLE 1032

Query: 70   TLKL 73
            TLKL
Sbjct: 1033 TLKL 1036

[Close]

BLAST of CaUC07G139440 vs. ExPASy TrEMBL
Match: A0A5D3CZ17 (Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001180 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 10   SPLIHFGSLENVVMVDLR-SGASQLPRQLEHLTALISSHISYFDDVEALFEWFENFTSLE 69
            SPL+H GSLEN+V+VDL  SGA QLP QLE LT+L S H+S+F  +EAL EWF NFTSLE
Sbjct: 961  SPLVHLGSLENLVLVDLEGSGAIQLPHQLEQLTSLRSLHLSHFSGIEALPEWFGNFTSLE 1020

Query: 70   TLKL 73
             LKL
Sbjct: 1021 ILKL 1024

The following BLAST results are available for this feature:

BLAST of CaUC07G139440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979680.1	4.0e-16	50.00	putative disease resistance protein RGA3 [Cucurbita maxima]	[more]
XP_023527716.1	6.9e-16	47.93	putative disease resistance protein RGA3 [Cucurbita pepo subsp. pepo]	[more]
XP_022955642.1	9.9e-15	48.67	uncharacterized protein LOC111457584 isoform X2 [Cucurbita moschata]	[more]
XP_022955641.1	9.9e-15	48.67	putative disease resistance protein RGA3 isoform X1 [Cucurbita moschata]	[more]
XP_004152292.1	1.1e-13	70.31	putative disease resistance protein RGA3 [Cucumis sativus] >KGN53094.1 hypotheti...	[more]

BLAST of CaUC07G139440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC07G139440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ITZ8	1.9e-16	50.00	putative disease resistance protein RGA3 OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1GU74	4.8e-15	48.67	uncharacterized protein LOC111457584 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GUB9	4.8e-15	48.67	putative disease resistance protein RGA3 isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A0A0KW56	5.3e-14	70.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015840 PE=4 SV=1	[more]
A0A5D3CZ17	9.0e-14	68.75	Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of CaUC07G139440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 4..105 e-value: 9.3E-6 score: 26.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G139440.1	CaUC07G139440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0043531	ADP binding