CaUC07G139060 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G139060
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	nuclear transport factor 2-like
Location	Ciama_Chr07: 29873959 .. 29874904 (+)
RNA-Seq Expression	CaUC07G139060
Synteny	CaUC07G139060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTAACCCTGGATATTTGTCGACACTATAAATTCCGAATTAACCCTCACCTTCTGGAACCCTCGGCTAACGCTGTCGTCTCCATTTGTTTCTCTTCAAAATCCGGCGTCGTTCCCAAGCAGGGCGGAAGAAAGTTGGGTCTCTGTTAGCTCTTTCCCAGCGGCGGATTTGAACGTTATCGGAATGGATCCCGACGCCGTCGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGGCTTGGTAATCTCTACCAAGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTCCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTTGATTGCCAGCCTTCCGGTCCCACTGGTGGCATGCTCGTCTTTGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGGTAATGCGTTTCTTTTTTTTATTTTTTTAATGAAAGATGTTACTCGATTTGTTTCAGTTTGTGAGCCTTGTGGTTATTGATGTTGGATTTATGGATTGATCTTGGTTGGATCTAGTGTTCTATTGGAATTAGCCGATCGATCCTTGTTATAGAGTTGGACTTCCTTCATTGAATTTGAGTTGTGATTCTCTAATTTATGCATTTGTGCACTTTGAATATCGTTAGGCTTTCTGTAGTTTGCGTCGTCTTTGTTCTTGTAGATCTAGGGATTTTCGTCGGAATTAATTGTATTATATTGGGACAGCGAGACGGTAGATCAAGCTTGAGATTGTTATGTGCTTATGGTGCTGCTTCAACATGTAGAGATGATTTATGTTTTTCCTATGGGGCTCTAGTTTCTGAAAAGAAATATTATGGAACAAGTTCTTTTGGTCATCTTTCTGGTTTACCAGCATCGGCCTCGTGA

mRNA sequence

TTCTAACCCTGGATATTTGTCGACACTATAAATTCCGAATTAACCCTCACCTTCTGGAACCCTCGGCTAACGCTGTCGTCTCCATTTGTTTCTCTTCAAAATCCGGCGTCGTTCCCAAGCAGGGCGGAAGAAAGTTGGGTCTCTGTTAGCTCTTTCCCAGCGGCGGATTTGAACGTTATCGGAATGGATCCCGACGCCGTCGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGGCTTGGTAATCTCTACCAAGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTCCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTTGATTGCCAGCCTTCCGGTCCCACTGGTGGCATGCTCGTCTTTGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGCGAGACGGTAGATCAAGCTTGAGATTGTTATGTGCTTATGGTGCTGCTTCAACATGTAGAGATGATTTATGTTTTTCCTATGGGGCTCTAGTTTCTGAAAAGAAATATTATGGAACAAGTTCTTTTGGTCATCTTTCTGGTTTACCAGCATCGGCCTCGTGA

Coding sequence (CDS)

ATGGATCCCGACGCCGTCGCTAAGGCATTCGTCGATCATTATTACTCCACCTTCGACGCCAATCGAGCCGGGCTTGGTAATCTCTACCAAGACAATTCCATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCACCTAATATCGTAGCCAAGCTCTCTAGCCTCCCCTTCCAGCAGTGCAAGCACTCCGTTAGCACCGTTGATTGCCAGCCTTCCGGTCCCACTGGTGGCATGCTCGTCTTTGTCAGCGGCAATCTTCAACTCGCTGGAGAACAACATGCTCTCAAATTCAGTCAGCGAGACGGTAGATCAAGCTTGAGATTGTTATGTGCTTATGGTGCTGCTTCAACATGTAGAGATGATTTATGTTTTTCCTATGGGGCTCTAGTTTCTGAAAAGAAATATTATGGAACAAGTTCTTTTGGTCATCTTTCTGGTTTACCAGCATCGGCCTCGTGA

Protein sequence

MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQRDGRSSLRLLCAYGAASTCRDDLCFSYGALVSEKKYYGTSSFGHLSGLPASAS

Homology

[Close]

BLAST of CaUC07G139060 vs. NCBI nr
Match: XP_004152114.2 (nuclear transport factor 2B [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. NCBI nr
Match: KGN53044.1 (hypothetical protein Csa_014783 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC
Sbjct: 51  MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 110

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 111 KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 149

[Close]

BLAST of CaUC07G139060 vs. NCBI nr
Match: XP_022979987.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-47
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQDNSMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. NCBI nr
Match: XP_022956152.1 (nuclear transport factor 2B [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-46
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. NCBI nr
Match: XP_023526029.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-46
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.6e-45
Identity = 86/99 (86.87%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKL+ LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KH+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-42
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQ 102

[Close]

BLAST of CaUC07G139060 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.9e-33
Identity = 74/127 (58.27%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  G+  I  KL SLPF QC
Sbjct: 1   MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQRDGRSSLRLLCAYGAASTCRD 120
            H ++TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQ       +LL A G      D
Sbjct: 61  HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQ-----MFQLLPAGGNFYVQND 120

Query: 121 DLCFSYG 128
               +YG
Sbjct: 121 MFRLNYG 122

[Close]

BLAST of CaUC07G139060 vs. ExPASy Swiss-Prot
Match: Q75AA5 (Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-23
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MD  A+A+ F + YY+ FD +R+ LGNLY+D SMLTFE  ++QG+ +IV KL SLPFQ+ 
Sbjct: 3   MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKV 62

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +H ++T+D QP+ P G +LV ++G+L +  EQ+A +FSQ
Sbjct: 63  QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQ 101

[Close]

BLAST of CaUC07G139060 vs. ExPASy Swiss-Prot
Match: Q6FRC6 (Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=NTF2 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-22
Identity = 49/99 (49.49%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MD +A+A+ F + YY+ FD++R+ LGNLY+D SMLTFE  ++QG+ +IV KL SLPFQ+ 
Sbjct: 3   MDFNALAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKV 62

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
            H ++T+D QP+ P G +LV ++G+L +  EQ+  +FSQ
Sbjct: 63  AHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQ 101

[Close]

BLAST of CaUC07G139060 vs. ExPASy TrEMBL
Match: A0A0A0KW20 (NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.5e-48
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRA LGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC
Sbjct: 51  MDPDAVAKAFVDHYYSTFDANRANLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 110

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 111 KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 149

[Close]

BLAST of CaUC07G139060 vs. ExPASy TrEMBL
Match: A0A6J1IQ79 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.9e-48
Identity = 96/99 (96.97%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQDNSMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDNSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. ExPASy TrEMBL
Match: A0A6J1GVJ2 (nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111457934 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.9e-47
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANRAGL NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC
Sbjct: 1   MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  QHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. ExPASy TrEMBL
Match: A0A6J1F2G7 (nuclear transport factor 2B-like OS=Cucurbita moschata OX=3662 GN=LOC111439162 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANR+GL NLYQDNSMLTFEGQKIQGS NIVAKL+SLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRSGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +HSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQ
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQ 101

[Close]

BLAST of CaUC07G139060 vs. ExPASy TrEMBL
Match: A0A6J1I548 (nuclear transport factor 2B-like OS=Cucurbita maxima OX=3661 GN=LOC111470768 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFVDHYYSTFDANR GL NLYQDNSMLTFEGQKIQGS NIVAKL+SLPFQQC
Sbjct: 3   MDPDAVAKAFVDHYYSTFDANRGGLANLYQDNSMLTFEGQKIQGSQNIVAKLTSLPFQQC 62

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +HSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQ
Sbjct: 63  QHSVSTVDCQPSGPSGGVLVFVSGNLQLAGEQHALKFSQ 101

[Close]

BLAST of CaUC07G139060 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 181.4 bits (459), Expect = 5.4e-46
Identity = 86/99 (86.87%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKL+ LPFQQC
Sbjct: 1   MDPDAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KH+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ
Sbjct: 61  KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQ 99

[Close]

BLAST of CaUC07G139060 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-43
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQ 102

[Close]

BLAST of CaUC07G139060 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-43
Identity = 82/99 (82.83%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 1   MDPDAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQC 60
           MDPDAV+KAFV+HYYSTFD NR GL  LYQ+ SMLTFEGQKIQG  +IVAKL+SLPFQQC
Sbjct: 4   MDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63

Query: 61  KHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           KH +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ
Sbjct: 64  KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQ 102

[Close]

BLAST of CaUC07G139060 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 114.8 bits (286), Expect = 6.2e-26
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 4   DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHS 63
           + VA AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQ 108

[Close]

BLAST of CaUC07G139060 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 114.8 bits (286), Expect = 6.2e-26
Identity = 58/99 (58.59%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 4   DAVAKAFVDHYYSTFDANRAGLGNLYQDNSMLTFEGQKIQGSPNIVAKLSSLPFQQCKHS 63
           + VA AFV+HYY  FD +R+ L +LY   S+LTFEGQ I G  NI  KL  LPF QC H 
Sbjct: 10  EEVASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFDQCHHL 69

Query: 64  VSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQ 100
           +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ
Sbjct: 70  ISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQ 108

The following BLAST results are available for this feature:

BLAST of CaUC07G139060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152114.2	3.2e-48	98.99	nuclear transport factor 2B [Cucumis sativus]	[more]
KGN53044.1	3.2e-48	98.99	hypothetical protein Csa_014783 [Cucumis sativus]	[more]
XP_022979987.1	2.1e-47	96.97	nuclear transport factor 2B [Cucurbita maxima]	[more]
XP_022956152.1	1.0e-46	95.96	nuclear transport factor 2B [Cucurbita moschata]	[more]
XP_023526029.1	1.0e-46	95.96	nuclear transport factor 2B [Cucurbita pepo subsp. pepo]	[more]

BLAST of CaUC07G139060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZK4	7.6e-45	86.87	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
Q9C7F5	2.1e-42	82.83	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
Q9XJ54	3.9e-33	58.27	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
Q75AA5	4.8e-23	50.51	Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / ...	[more]
Q6FRC6	1.8e-22	49.49	Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM...	[more]

BLAST of CaUC07G139060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW20	1.5e-48	98.99	NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G012400 PE=4 S...	[more]
A0A6J1IQ79	9.9e-48	96.97	nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111479515 PE=4 SV=...	[more]
A0A6J1GVJ2	4.9e-47	95.96	nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111457934 PE=4 S...	[more]
A0A6J1F2G7	1.6e-45	92.93	nuclear transport factor 2B-like OS=Cucurbita moschata OX=3662 GN=LOC111439162 P...	[more]
A0A6J1I548	2.1e-45	92.93	nuclear transport factor 2B-like OS=Cucurbita maxima OX=3661 GN=LOC111470768 PE=...	[more]

BLAST of CaUC07G139060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27310.1	5.4e-46	86.87	nuclear transport factor 2A	[more]
AT1G27970.1	1.5e-43	82.83	nuclear transport factor 2B	[more]
AT1G27970.2	1.5e-43	82.83	nuclear transport factor 2B	[more]
AT1G11570.1	6.2e-26	58.59	NTF2-like	[more]
AT1G11570.2	6.2e-26	58.59	NTF2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 6..100 e-value: 3.1E-27 score: 95.5
None	No IPR available	GENE3D	3.10.450.50		coord: 1..100 e-value: 4.7E-34 score: 119.2
None	No IPR available	PANTHER	PTHR12612:SF34	BNAA07G08920D PROTEIN	coord: 1..101
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 1..101
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 6..99 score: 24.983776
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 2..99 e-value: 9.56919E-40 score: 128.169
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 3..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G139060.1	CaUC07G139060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0044613	nuclear pore central transport channel