CaUC07G128280 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC07G128280
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	cyclin-dependent protein kinase inhibitor SMR2
Location	Ciama_Chr07: 3785844 .. 3786050 (+)
RNA-Seq Expression	CaUC07G128280
Synteny	CaUC07G128280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGGAGACGGTGGATCTTTGCCGCACGCCGCGACGGAGAAGCTGCAGAATACCGGTGGCGGGGGCGTGCCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGACGGCTACTTTCGGCCGCCGGATTTGGAAGTTTTGTTTGGTTTTGTTGCTCCAAGAGATCAAGAGGCTTGTAGTTGA

mRNA sequence

ATGGCGGAGGAGACGGTGGATCTTTGCCGCACGCCGCGACGGAGAAGCTGCAGAATACCGGTGGCGGGGGCGTGCCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGACGGCTACTTTCGGCCGCCGGATTTGGAAGTTTTGTTTGGTTTTGTTGCTCCAAGAGATCAAGAGGCTTGTAGTTGA

Coding sequence (CDS)

ATGGCGGAGGAGACGGTGGATCTTTGCCGCACGCCGCGACGGAGAAGCTGCAGAATACCGGTGGCGGGGGCGTGCCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGACGGCTACTTTCGGCCGCCGGATTTGGAAGTTTTGTTTGGTTTTGTTGCTCCAAGAGATCAAGAGGCTTGTAGTTGA

Protein sequence

MAEETVDLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVAPRDQEACS

Homology

[Close]

BLAST of CaUC07G128280 vs. NCBI nr
Match: KAE8647993.1 (hypothetical protein Csa_021483 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MAEETVDLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVA 60
          MAEETV+LCRTPRRRSCRIPVA ACPSAPRKKPVCLKRKAPPK+GYFR PDLEVLFGFV 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PRDQEAC 68
          PR +EAC
Sbjct: 61 PR-EEAC 66

[Close]

BLAST of CaUC07G128280 vs. NCBI nr
Match: KAG6600042.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030712.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 8.7e-22
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MAEETVDLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVA 60
          MAEE  D+CRTPRR+SCRIPVA  CP+APRKK V LKRKAPPKDGYFRPPDLEVLFGFVA
Sbjct: 1  MAEEKKDICRTPRRKSCRIPVAVLCPAAPRKKAVSLKRKAPPKDGYFRPPDLEVLFGFVA 60

Query: 61 PR 63
          PR
Sbjct: 61 PR 62

[Close]

BLAST of CaUC07G128280 vs. NCBI nr
Match: XP_021655298.1 (cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 7  DLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVAPRDQEA 66
          ++C TPRRR  RIP A ACP APRKKPV  K+++PPKDGYF+PPDLE LF  +APR +EA
Sbjct: 6  EVCNTPRRRESRIPAALACPPAPRKKPVFSKKRSPPKDGYFQPPDLEALF-MIAPR-REA 65

Query: 67 CS 69
          C+
Sbjct: 66 CA 65

[Close]

BLAST of CaUC07G128280 vs. NCBI nr
Match: EEF30808.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAG-ACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVAPRDQEAC 68
          CRTP RR CRIP A  ACP APRKKPV +K++ PPKDGYF+PPDLE  F  + PR + +C
Sbjct: 8  CRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREASC 67

[Close]

BLAST of CaUC07G128280 vs. NCBI nr
Match: KAF3449173.1 (hypothetical protein FNV43_RR09901 [Rhamnella rubrinervis])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 7  DLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVAPRDQEA 66
          D C TP+RR CRIPV   CP  P+KK VC  ++ PPKDGYF+PPDL+ L  FV P  ++A
Sbjct: 9  DECTTPKRRECRIPVMFVCPPPPKKKTVCGTKRDPPKDGYFQPPDLDAL--FVMPPRRQA 68

Query: 67 CS 69
          C+
Sbjct: 69 CA 68

[Close]

BLAST of CaUC07G128280 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  MAEETVDLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVA 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP++GYF+PPDLE LF +  
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PRDQEACS 69
          PR +EAC+
Sbjct: 70 PR-REACA 72

[Close]

BLAST of CaUC07G128280 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-07
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAGACPSAPRKKPVCL---KRKAPPKDGYFRPPDLEVLFGFVA 61
          C TP R  CRIP    CP   R+K   L   K++ PPK GYF+PPDL++ F  VA
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVA 76

[Close]

BLAST of CaUC07G128280 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.5e-04
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 4   ETVDLC-RTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLF 57
           E  DLC  TP   S RIP    CP AP+K+ + LK    P++ +F PPDLE +F
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVF 101

[Close]

BLAST of CaUC07G128280 vs. ExPASy TrEMBL
Match: A0A0A0KS84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.8e-26
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MAEETVDLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVA 60
          MAEETV+LCRTPRRRSCRIPVA ACPSAPRKKPVCLKRKAPPK+GYFR PDLEVLFGFV 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PRDQEACS 69
          PR +EAC+
Sbjct: 61 PR-EEACT 67

[Close]

BLAST of CaUC07G128280 vs. ExPASy TrEMBL
Match: B9T003 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAG-ACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVAPRDQEAC 68
          CRTP RR CRIP A  ACP APRKKPV +K++ PPKDGYF+PPDLE  F  + PR + +C
Sbjct: 8  CRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREASC 67

[Close]

BLAST of CaUC07G128280 vs. ExPASy TrEMBL
Match: A0A5N6QF01 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVA 61
          C TPR   CR+P A ACP AP+KKPV  K++APPK+GYF+PPDLE LF  V+
Sbjct: 14 CGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVS 65

[Close]

BLAST of CaUC07G128280 vs. ExPASy TrEMBL
Match: A0A1U8A7K0 (cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LOC104601057 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.3e-11
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVAPRDQEAC 68
          C TP+ R CRIP+A  CP  PRKKP+  K++ PP +GYF+PPDLE+LF  +APR +EAC
Sbjct: 39 CETPKHRDCRIPMASVCPPPPRKKPIYGKKRDPPTNGYFQPPDLELLFA-IAPR-REAC 95

[Close]

BLAST of CaUC07G128280 vs. ExPASy TrEMBL
Match: G7KBS4 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g080040 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.7e-11
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAGACPSAPRKKPV--CLKRKAPPKDGYFRPPDLEVLFGFVAPRDQEA 67
          CRTP+   CRIP A  CPSAP+KKPV    K+K PPKDGYF PPDLE++F  +  R++E+
Sbjct: 11 CRTPKHSGCRIPPATICPSAPKKKPVVYSTKKKVPPKDGYFNPPDLELIFRVLPIRERES 70

[Close]

BLAST of CaUC07G128280 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  MAEETVDLCRTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLFGFVA 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP++GYF+PPDLE LF +  
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PRDQEACS 69
          PR +EAC+
Sbjct: 70 PR-REACA 72

[Close]

BLAST of CaUC07G128280 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 6.0e-05
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 0


Query: 4   ETVDLC-RTPRRRSCRIPVAGACPSAPRKKPVCLKRKAPPKDGYFRPPDLEVLF 57
           E  DLC  TP   S RIP    CP AP+K+ + LK    P++ +F PPDLE +F
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVF 101

The following BLAST results are available for this feature:

BLAST of CaUC07G128280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647993.1	1.3e-25	89.55	hypothetical protein Csa_021483 [Cucumis sativus]	[more]
KAG6600042.1	8.7e-22	85.48	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_021655298.1	1.5e-13	66.13	cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis]	[more]
EEF30808.1	6.2e-12	62.30	conserved hypothetical protein [Ricinus communis]	[more]
KAF3449173.1	5.3e-11	56.45	hypothetical protein FNV43_RR09901 [Rhamnella rubrinervis]	[more]

BLAST of CaUC07G128280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	2.5e-11	52.94	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	3.7e-07	49.09	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	8.5e-04	46.30	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CaUC07G128280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS84	4.8e-26	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1	[more]
B9T003	3.0e-12	62.30	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1	[more]
A0A5N6QF01	4.3e-11	63.46	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1	[more]
A0A1U8A7K0	4.3e-11	59.32	cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LO...	[more]
G7KBS4	5.7e-11	58.33	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g080040 PE=4 SV=1	[more]

BLAST of CaUC07G128280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	1.7e-12	52.94	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G60783.1	6.0e-05	46.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142:SF56	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5	coord: 7..64
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 7..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC07G128280.1	CaUC07G128280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus