CaUC06G120400 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G120400
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionzf-RVT domain-containing protein
LocationCiama_Chr06: 25488152 .. 25489162 (-)
RNA-Seq ExpressionCaUC06G120400
SyntenyCaUC06G120400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGCCCCCAAGGGTTAAAATGATGGTGTGGAAGTCCATTACCGATTCTCTGCCCACCCCGGGCAATATTACAAAGAAAGGAATCGTTACCAACCCCCTTTGTTTATTTTGGAGGAATTTTGTGGAAACGTAGAGCCATGTGTTGTGGGGATGTAAATTTACTAAAAGTATTTGGCTTTCTCTCTTTTCTTCATTAGTTGGTTTCCCGTCTGGTTTTATGGACTGTTGGAGCCCGACAGACTGTTGGGACAAAGTGTTGATGAAGCTGCATGGTTTGTATTGGGATACCGCTGGCATCCTTCTATGAGATGTCTGGAATTACAAGAACCTTTTACTGCAAAGCGACAATTCCCTTGCGCGCAATGTTTTGGTTGGCAAGATCTCTATGCATATGGAGGAGTTTCGTGGGAACAATGGTGGTGAGCAGTTGTCTTTTAGGAGGGAGATTCTGAGGAGTCAGGAGATGTGGGTGCTGCCTGAATTGGGGTTATGGAAGATGAACATCGATGCCTCGTGGTCTGAGCTTGAAGGGGCAGGTGGTATTAGTTAGGTGGTTCATGACTCGTCTGGCTCTCTCATCCTGGGTGGTTGTGAGAAAGTGGACCTCAATTGGTCCATTAAGTTCCCTGAGGCTTTGGCGTTGATTAGAGGTCTGAAAGCTTTCGTTTACTATTTTGATCATGGGTCCTTTCCCATGTTCTAGTGGAGTCTGATTGTATGAATCTTATCAATGATATTAATCATAAAATTCAGGACTTGTCGGAGTTGTCGAGTTTTGTTGAGGAGATTGAGACTTTGGGCGCTTGTGCTCATGTGATTTTCTTTTGTTGCTGTATGTGGTCTACGAATGGGTTGGCTCATCGCATGGCTCGTGTTGCAGTGTTGGGTAGTGATTAGGTGAGATTTTTTGTTTCAGATTCTTCTTCTAGCTCTAAAGAAATGGTTAAGATTCTTTGTATCATTCCAGACTCTTTCTCCTCTATCTTTGAAGGGGAGGGTTGTGGTTGTTGT

mRNA sequence

GGTGCCCCCAAGGGTTAAAATGATGGTGTGGAAGTCCATTACCGATTCTCTGCCCACCCCGGGCAATATTACAAAGAAAGGAATCGTTACCAACCCCCTTTGTTTATTTTGGAGGAATTTTGTGGAAACTTGGTTTCCCGTCTGGTTTTATGGACTGTTGGAGCCCGACAGACTGTTGGGACAAAGTGTTGATGAAGCTGCATGGTTTGTATTGGGATACCGCTGGCATCCTTCTATGAGATGTCTGGAATTACAAGAACCTTTTACTGCAAAGCGACAATTCCCTTGCGCGCAATGTTTTGGTTGGCAAGATCTCTATGCATATGGAGGAGTTTCGTGGGAACAATGGTGGAGGGAGATTCTGAGGAGTCAGGAGATGTGGGTGCTGCCTGAATTGGGGTTATGGAAGATGAACATCGATGCCTCGTGGTCTGAGCTTGAAGGGGCAGGTGTGGAGTCTGATTGTATGAATCTTATCAATGATATTAATCATAAAATTCAGGACTTGTCGGAGTTGTCGAGTTTTGTTGAGGAGATTGAGACTTTGGGCGCTTGTGCTCATGTGATTTTCTTTTGTTGCTGTATGTGGTCTACGAATGGGTTGGCTCATCGCATGGCTCGTGTTGCAGTGTTGGGTAATTCTTCTTCTAGCTCTAAAGAAATGGTTAAGATTCTTTGTATCATTCCAGACTCTTTCTCCTCTATCTTTGAAGGGGAGGGTTGTGGTTGTTGT

Coding sequence (CDS)

ATGATGGTGTGGAAGTCCATTACCGATTCTCTGCCCACCCCGGGCAATATTACAAAGAAAGGAATCGTTACCAACCCCCTTTGTTTATTTTGGAGGAATTTTGTGGAAACTTGGTTTCCCGTCTGGTTTTATGGACTGTTGGAGCCCGACAGACTGTTGGGACAAAGTGTTGATGAAGCTGCATGGTTTGTATTGGGATACCGCTGGCATCCTTCTATGAGATGTCTGGAATTACAAGAACCTTTTACTGCAAAGCGACAATTCCCTTGCGCGCAATGTTTTGGTTGGCAAGATCTCTATGCATATGGAGGAGTTTCGTGGGAACAATGGTGGAGGGAGATTCTGAGGAGTCAGGAGATGTGGGTGCTGCCTGAATTGGGGTTATGGAAGATGAACATCGATGCCTCGTGGTCTGAGCTTGAAGGGGCAGGTGTGGAGTCTGATTGTATGAATCTTATCAATGATATTAATCATAAAATTCAGGACTTGTCGGAGTTGTCGAGTTTTGTTGAGGAGATTGAGACTTTGGGCGCTTGTGCTCATGTGATTTTCTTTTGTTGCTGTATGTGGTCTACGAATGGGTTGGCTCATCGCATGGCTCGTGTTGCAGTGTTGGGTAATTCTTCTTCTAGCTCTAAAGAAATGGTTAAGATTCTTTGTATCATTCCAGACTCTTTCTCCTCTATCTTTGAAGGGGAGGGTTGTGGTTGTTGT

Protein sequence

MMVWKSITDSLPTPGNITKKGIVTNPLCLFWRNFVETWFPVWFYGLLEPDRLLGQSVDEAAWFVLGYRWHPSMRCLELQEPFTAKRQFPCAQCFGWQDLYAYGGVSWEQWWREILRSQEMWVLPELGLWKMNIDASWSELEGAGVESDCMNLINDINHKIQDLSELSSFVEEIETLGACAHVIFFCCCMWSTNGLAHRMARVAVLGNSSSSSKEMVKILCIIPDSFSSIFEGEGCGCC
Homology
[Close]
BLAST of CaUC06G120400 vs. ExPASy TrEMBL
Match: A0A0A0LQ43 (zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-04
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 1  MMVWKSITDSLPTPGNITKKGIVTNPLCLFWRNFVE 37
          + +WK+ T+SLPT  NITK+GI+TNPLCLF R  VE
Sbjct: 12 LSMWKTATNSLPTLSNITKRGIITNPLCLFCRKSVE 47

The following BLAST results are available for this feature:
BLAST of CaUC06G120400 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G120400 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC06G120400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ436.2e-0463.89zf-RVT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G404950 PE=4... [more]
BLAST of CaUC06G120400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G120400.1CaUC06G120400.1mRNA