CaUC06G119120 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G119120
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr06: 23947031 .. 23949598 (-)
RNA-Seq ExpressionCaUC06G119120
SyntenyCaUC06G119120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATAATCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGTGTAATTACAGGTCATTCCACTATATCGTCGTCCACCCGAGTGTCATCCTTCTTTAATATTGGCTCTCTCATTTGTTTCCATATTGCGTTTGTGTTTGCGTTGTTGCTGTGAATCTTCCATCCATGCTCCTCCTTTCATTCCATTTTTGTTGCATAAGTTGAAATTCGTTGGGATTAAATTCCGATTATACATCGAAATTATTCAACTCTCCATTGCTGGCGGTATCTAACTCTTCTCCAAAGTTCAATCTTCTTATTCAAATGCCAACTTCATTGATTCACATCACATTCTTCTTTACAAGATTAATGTTCTTTATATGAATCATTTTTAAAAGCTCTGCTATCAAATTGACTTTTTATAGCTTTTAAGGAAATGAGATAATTAACTAACACTAATTAATCTAAATTAACAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAAAACTCGAATGATACTTGTAATAATATCTAATGAAATGAGCAAGACCACTCGTTTCATACAACAAGGTCAAAATGACAATCATGTTGCGTCTTCTTCATGTTAACAAACATTTATATTAGTTAGGAGTAAGATAAAGCATACTTTGAAGTATAGGAACTAGGGTTCTGAAGCAACACTCGACTGATCCACTAGTCGATTTGTCAACTTCATTTGTTCATTCCTAATCATAACACAATTAAAAGTTTCTAAGTTCAAAATTAAATAAATAGCATAGGATAAAATTCATACGTTATCCTAAATTTTATTTGATGATGATCTCAATCCAATAATTGTTATAAACATAAATATGAGGTTGAAATATAAAACTGGTCTAAGCCTTTCTTTTATCAGTATCAACAAAATACCAACTCAAAATCACCATCATTGAATTATTGACATAATTAAATTTATCTTAGGATCGTTTTTGCTTGTTTTTGTTGAATTATTGATAAAATTAAATCTACCATATAATCAAATCACCTTAAGCTTTTAGATTAATGGGTAATTTAACAATTTTTAGTTTGACAAAACATATGGTTGTTGGAATTCAAACCTAAAATCCCTTGACAGAAAATTGTCGAACACCCTTTTTTAAAATTAGTTCAAAGGCATCTCGGCCGAGATCGAGCACCAAAATTTAGATAAAAGAAAAAAAATATTTAACCTTTTCATCTAAGGAAAATAATGGAAACTCTGAATGAAGGAAGAGAGCATCTTCACCAAAGCCAAGGCTCCACAGGCAGTTTATATGGTTATGAATGAATTGTACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGAAACCCTTTCTAATATTAGCCTCTTCCTTTTTATGTTTCTCCTTTCTTCTTCCTTCAATGGATCCACCATTCCCCCAGAGCTTTTCCCCATCCCCTGCTGCAACTAAACCACATTAACCATGGCCGATCTTAAACCCCTCCAACTTCTACTGCTAATGGCGCCCCTTCTTATTGCCTTTCAACTCGATTCCATTTTCGCTAACACAGATACACCCAATCCCAATCTTCCCCAAGAAACAACCAATGGAGGAGGACCCCTCTCTTCTTCCTCAGATTCTCATCTTCCTCCGCCCCCCAACAAACAAAGACCCGACCCAAACAGAATCAAAGAGCTTCTCAAACAATTCGCCACTCAATTCTCTCAAAAACGCTTCCATTAGGAAACGTCGAAGACGCCGACGCGCTTTTCAACGCGCTTCCAGGCATTACTCCTCCCAAAGTTATATTCCAACGGTTCCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTCGATTCTGCATAATCTGCTTACTGTTAACTCACATTGAAGATGTAGATGAAGATGAAGATGAAAGCTAG

mRNA sequence

ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATAATCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGTGTAATTACAGGAAACGTCGAAGACGCCGACGCGCTTTTCAACGCGCTTCCAGGCATTACTCCTCCCAAAGTTATATTCCAACGGTTCCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTCGATTCTGCATAATCTGCTTACTGTTAACTCACATTGAAGATGTAGATGAAGATGAAGATGAAAGCTAG

Coding sequence (CDS)

ATGGCTGCAATTCACCGCTGCTTCCTTCCGATTGCCCTAATTTCTCTTCTCTTGCTTTCTGAATCTCTCACTATCTCCTCTGCTGATGATGGCCAGGATTCGAATTCTATAATCCGCCGGAATATGGTTCATTCATCGGAGCATCGGCGAGGGGATAAGGATTCCGGCTCGTCTTTGGGCTGGAAGATCATTATGAAAAGAGGAGTTCGATCGGGTGTAATTACAGGAAACGTCGAAGACGCCGACGCGCTTTTCAACGCGCTTCCAGGCATTACTCCTCCCAAAGTTATATTCCAACGGTTCCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTCGATTCTGCATAATCTGCTTACTGTTAACTCACATTGAAGATGTAGATGAAGATGAAGATGAAAGCTAG

Protein sequence

MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNSIIRRNMVHSSEHRRGDKDSGSSLGWKIIMKRGVRSGVITGNVEDADALFNALPGITPPKVIFQRFLCRTFASRFFRRFCIICLLLTHIEDVDEDEDES
Homology
[Close]
BLAST of CaUC06G119120 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 0 

Query: 1  MAAIHRCFLPIALISLLLLSESLTISSADDGQDSNS---IIRRNMVHSSEHRRGDKDSGS 60
          MA I R F PI LI LLLLSES  +SSAD  QD  S   I+ RN++H  EH+R DKD+GS
Sbjct: 1  MAPIKRLF-PITLICLLLLSESFPVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGS 60

Query: 61 SLGWKIIMKRGVRSGVITGN 78
          SL  KI +KRG RS VI G+
Sbjct: 61 SLAEKISIKRGARSAVIGGH 79

[Close]
BLAST of CaUC06G119120 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 47/77 (61.04%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 1  MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSIIRRNMVHSSEHRRGDKDSGSSL 60
          MAAIHR  LP+ALISLLL SESL  ISS D GQ+SN             RRGDK S +SL
Sbjct: 1  MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN-------------RRGDKGSDTSL 60

Query: 61 GWKIIMKRGVRSGVITG 77
            KII KRGVRSGV  G
Sbjct: 61 AGKIISKRGVRSGVTAG 64

[Close]
BLAST of CaUC06G119120 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 48/76 (63.16%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 2  AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSIIRRNMVHSSEHRRGDKDSGSSLG 61
          AAIHR  LPIALISLLL SESL  ISS+D  QDSN             R GDKDSG+SL 
Sbjct: 3  AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN-------------RPGDKDSGTSLT 62

Query: 62 WKIIMKRGVRSGVITG 77
           KI +KRGVRSGVI G
Sbjct: 63 EKISIKRGVRSGVIAG 65

[Close]
BLAST of CaUC06G119120 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.1e-09
Identity = 47/77 (61.04%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 1  MAAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSIIRRNMVHSSEHRRGDKDSGSSL 60
          MAAIHR  LP+ALISLLL SESL  ISS D GQ+SN             RRGDK S +SL
Sbjct: 1  MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN-------------RRGDKGSDTSL 60

Query: 61 GWKIIMKRGVRSGVITG 77
            KII KRGVRSGV  G
Sbjct: 61 AGKIISKRGVRSGVTAG 64

[Close]
BLAST of CaUC06G119120 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 48/76 (63.16%), Postives = 51/76 (67.11%), Query Frame = 0 

Query: 2  AAIHRCFLPIALISLLLLSESL-TISSADDGQDSNSIIRRNMVHSSEHRRGDKDSGSSLG 61
          AAIHR  LPIALISLLL SESL  ISS+D  QDSN             R GDKDSG+SL 
Sbjct: 3  AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN-------------RPGDKDSGTSLT 62

Query: 62 WKIIMKRGVRSGVITG 77
           KI +KRGVRSGVI G
Sbjct: 63 EKISIKRGVRSGVIAG 65

The following BLAST results are available for this feature:
BLAST of CaUC06G119120 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587814.12.0e-0958.75hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0035100.11.3e-0861.04hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597... [more]
KGN65176.12.2e-0863.16hypothetical protein Csa_019975 [Cucumis sativus][more]
BLAST of CaUC06G119120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G119120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BCG46.1e-0961.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYV91.0e-0863.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1[more]
BLAST of CaUC06G119120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G119120.1CaUC06G119120.1mRNA