CaUC06G118380 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G118380
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProton_antipo_M domain-containing protein
LocationCiama_Chr06: 23240114 .. 23240887 (-)
RNA-Seq ExpressionCaUC06G118380
SyntenyCaUC06G118380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTCCAGCTCCGTATCAAGGTCACGGTCGATATCGTCACTATCATCAATATCGCCACTATCATCAATATCGTCACTATCATCAATAAGAAAACCCTCAGGCTTGTTATCCAGGAACGTGTTCAGAAATACTGTAATGAAAGGAAGATAGGAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAATACCCCTAGAGGGGGATAGGGCTAAGCGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGAAAACTATTAGCCCCACACGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATGTCCGTCTTTCTGCTAAACAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTAAGTATCGTAAGTAAATTACTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGATCACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCTTTCTTTATCATCAATCGAATCACTGTTCGAGACCCAGGATTCGATTTTATCATCAATCCAATCACCGTTCACATTTTTTCTTTTTCTTATCAATGAATATATCTCTTTACTTGTATGACTTAGATGTCTCGTATTTCTCGAAAAAGCGATTCGATTGATGGGATTTGGTATGATACTTATGAGATCGATGAGATTGATATTCCAATCTTTCTTCTTCGA

mRNA sequence

AAGCTCCAGCTCCGTATCAAGGTCACGGTCGATATCGTCACTATCATCAATATCGCCACTATCATCAATATCGTCACTATCATCAATAAGAAAACCCTCAGGCTTGTTATCCAGGAACGTGTTCAGAAATACTGTAATGAAAGGAAGATAGGAATGTCTCGTATTTCTCGAAAAAGCGATTCGATTGATGGGATTTGGTATGATACTTATGAGATCGATGAGATTGATATTCCAATCTTTCTTCTTCGA

Coding sequence (CDS)

AAGCTCCAGCTCCGTATCAAGGTCACGGTCGATATCGTCACTATCATCAATATCGCCACTATCATCAATATCGTCACTATCATCAATAAGAAAACCCTCAGGCTTGTTATCCAGGAACGTGTTCAGAAATACTGTAATGAAAGGAAGATAGGAATGTCTCGTATTTCTCGAAAAAGCGATTCGATTGATGGGATTTGGTATGATACTTATGAGATCGATGAGATTGATATTCCAATCTTTCTTCTTCGA

Protein sequence

KLQLRIKVTVDIVTIINIATIINIVTIINKKTLRLVIQERVQKYCNERKIGMSRISRKSDSIDGIWYDTYEIDEIDIPIFLLR
Homology
[Close]
BLAST of CaUC06G118380 vs. NCBI nr
Match: RDY14315.1 (hypothetical protein CR513_00634, partial [Mucuna pruriens])

HSP 1 Score: 105.1 bits (261), Expect = 2.9e-19
Identity = 71/115 (61.74%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 1   KLQLRIKVTVDIVTIINIATIINIVTIINKKTLRLVIQERVQKYCNERKIG--------- 60
           KLQL IKVTVDIV      TIINIVTIIN KTLRLVIQE VQKYCNER IG         
Sbjct: 119 KLQLHIKVTVDIV------TIINIVTIINNKTLRLVIQELVQKYCNERNIGDRPVPIEPI 178

Query: 61  -----------------------MSRISRKSDSIDGIWYDTYEIDEIDIPIFLLR 84
                                  MSRISRKSDSIDGIWYDTYEIDE  IPIFLLR
Sbjct: 179 TKIPLGGGRAKRSEKDCFTCMTYMSRISRKSDSIDGIWYDTYEIDE--IPIFLLR 225

[Close]
BLAST of CaUC06G118380 vs. NCBI nr
Match: CAA9893436.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 52 MSRISRKSDSIDGIWYDTYEIDEIDIPIFLLR 84
          MSRISRKSDSIDGIWYDTYEIDEIDI IF+LR
Sbjct: 1  MSRISRKSDSIDGIWYDTYEIDEIDIQIFILR 32

[Close]
BLAST of CaUC06G118380 vs. NCBI nr
Match: MBA0870911.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 64.3 bits (155), Expect = 5.6e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 52 MSRISRKSDSIDGIWYDTYEIDEIDIPIFLLR 84
          MSRISRK+DSIDGIWYDTYEIDEIDI IFLLR
Sbjct: 1  MSRISRKNDSIDGIWYDTYEIDEIDIQIFLLR 32

[Close]
BLAST of CaUC06G118380 vs. NCBI nr
Match: KAF5952531.1 (hypothetical protein HYC85_010475 [Camellia sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-05
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 52  MSRISRKSDSIDGIWYDTYEIDEID---IPIFLLR 84
           MSRISRKSDSIDGIWYDTYEID+ID   I IFLLR
Sbjct: 188 MSRISRKSDSIDGIWYDTYEIDDIDEIYIQIFLLR 222

[Close]
BLAST of CaUC06G118380 vs. ExPASy TrEMBL
Match: A0A371IH69 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00634 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 71/115 (61.74%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 1   KLQLRIKVTVDIVTIINIATIINIVTIINKKTLRLVIQERVQKYCNERKIG--------- 60
           KLQL IKVTVDIV      TIINIVTIIN KTLRLVIQE VQKYCNER IG         
Sbjct: 119 KLQLHIKVTVDIV------TIINIVTIINNKTLRLVIQELVQKYCNERNIGDRPVPIEPI 178

Query: 61  -----------------------MSRISRKSDSIDGIWYDTYEIDEIDIPIFLLR 84
                                  MSRISRKSDSIDGIWYDTYEIDE  IPIFLLR
Sbjct: 179 TKIPLGGGRAKRSEKDCFTCMTYMSRISRKSDSIDGIWYDTYEIDE--IPIFLLR 225

[Close]
BLAST of CaUC06G118380 vs. ExPASy TrEMBL
Match: A0A7J9MIX9 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_018620 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 52 MSRISRKSDSIDGIWYDTYEIDEIDIPIFLLR 84
          MSRISRK+DSIDGIWYDTYEIDEIDI IFLLR
Sbjct: 1  MSRISRKNDSIDGIWYDTYEIDEIDIQIFLLR 32

[Close]
BLAST of CaUC06G118380 vs. ExPASy TrEMBL
Match: A0A7J7HJW0 (Proton_antipo_M domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_010475 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 52  MSRISRKSDSIDGIWYDTYEIDEID---IPIFLLR 84
           MSRISRKSDSIDGIWYDTYEID+ID   I IFLLR
Sbjct: 188 MSRISRKSDSIDGIWYDTYEIDDIDEIYIQIFLLR 222

The following BLAST results are available for this feature:
BLAST of CaUC06G118380 vs. NCBI nr
Match NameE-valueIdentityDescription
RDY14315.12.9e-1961.74hypothetical protein CR513_00634, partial [Mucuna pruriens][more]
CAA9893436.14.3e-0793.75unnamed protein product [Spirodela intermedia][more]
MBA0870911.15.6e-0793.75hypothetical protein [Gossypium schwendimanii][more]
KAF5952531.12.4e-0585.71hypothetical protein HYC85_010475 [Camellia sinensis][more]
BLAST of CaUC06G118380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC06G118380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371IH691.4e-1961.74Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00634 P... [more]
A0A7J9MIX92.7e-0793.75Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_018620 PE=4... [more]
A0A7J7HJW01.1e-0585.71Proton_antipo_M domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_... [more]
BLAST of CaUC06G118380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G118380.1CaUC06G118380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009579 thylakoid