CaUC06G118260 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC06G118260
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDUF4283 domain-containing protein
LocationCiama_Chr06: 23137256 .. 23137480 (-)
RNA-Seq ExpressionCaUC06G118260
SyntenyCaUC06G118260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGGGTTTAGCAATGATAAAGGAAATCAGTTTTTAGTCCAATCGGTAGCAATTTTAGAAGGAAGATGGATAATTGAACAAAACCCCAATATTCATGGTACATTCACCAGGGAAGCAACCATGGTTTTTTATGAATTCGATCCTGAGATGGAAAATTATTGCTTCATCGAAAACATAGCAGTCCCTCCATTGAAAATACAACAACCTAGCTCCGATCAATGA

mRNA sequence

ATGATAGGGTTTAGCAATGATAAAGGAAATCAGTTTTTAGTCCAATCGGTAGCAATTTTAGAAGGAAGATGGATAATTGAACAAAACCCCAATATTCATGGTACATTCACCAGGGAAGCAACCATGGTTTTTTATGAATTCGATCCTGAGATGGAAAATTATTGCTTCATCGAAAACATAGCAGTCCCTCCATTGAAAATACAACAACCTAGCTCCGATCAATGA

Coding sequence (CDS)

ATGATAGGGTTTAGCAATGATAAAGGAAATCAGTTTTTAGTCCAATCGGTAGCAATTTTAGAAGGAAGATGGATAATTGAACAAAACCCCAATATTCATGGTACATTCACCAGGGAAGCAACCATGGTTTTTTATGAATTCGATCCTGAGATGGAAAATTATTGCTTCATCGAAAACATAGCAGTCCCTCCATTGAAAATACAACAACCTAGCTCCGATCAATGA

Protein sequence

MIGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIAVPPLKIQQPSSDQ
Homology
BLAST of CaUC06G118260 vs. NCBI nr
Match: KAA0063733.1 (hypothetical protein E6C27_scaffold1290G00140 [Cucumis melo var. makuwa] >TYK10959.1 hypothetical protein E5676_scaffold107G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 7.5e-11
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 2  IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
          I   N KGN F VQ+V+  EGRW  E+N NIHG+FTR+A + F EFD E E Y F+  +A
Sbjct: 25 INIMNSKGNIFTVQTVSFTEGRWFKERNANIHGSFTRQAALEFNEFDFEAEKYSFMGFVA 84

Query: 62 VPPLK 67
           PP K
Sbjct: 85 TPPEK 89

BLAST of CaUC06G118260 vs. NCBI nr
Match: KAA0040709.1 (hypothetical protein E6C27_scaffold529G00290 [Cucumis melo var. makuwa] >TYK14278.1 hypothetical protein E5676_scaffold4170G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 2   IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
           I  +++K N F VQ+++  EGRW  E+N NIHG+FTR+A + F EFD E + Y F+   A
Sbjct: 112 INITDNKNNIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTA 171

Query: 62  VPPLK 67
            PP K
Sbjct: 172 TPPKK 176

BLAST of CaUC06G118260 vs. NCBI nr
Match: TYK07346.1 (hypothetical protein E5676_scaffold202G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-08
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 2  IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
          I  ++ KGN F VQ+V+  EGR   E+N NIHG+FTR+A + F EFD + E Y F+  +A
Sbjct: 25 IYITDSKGNIFTVQTVSFTEGRCFKERNANIHGSFTRQAALEFNEFDFDAEKYPFMGFVA 84

Query: 62 VPPLK 67
           PP K
Sbjct: 85 TPPEK 89

BLAST of CaUC06G118260 vs. NCBI nr
Match: KAA0047508.1 (putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative amidohydrolase ytcJ [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-08
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 2   IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
           I   + KGN F +Q+V+  E RW  E+N NIH  FTR+A + F EFD E E Y F+  + 
Sbjct: 66  INIKDSKGNIFTIQTVSFTEERWFKERNANIHSYFTRQAALEFNEFDFEAEKYSFMGFVV 125

Query: 62  VPPLK 67
            PP K
Sbjct: 126 TPPKK 130

BLAST of CaUC06G118260 vs. NCBI nr
Match: KAA0057199.1 (hypothetical protein E6C27_scaffold280G00320 [Cucumis melo var. makuwa] >TYK18763.1 hypothetical protein E5676_scaffold257G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.7e-08
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 6   NDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPE 51
           +D+GN+FLV S+   EGRW+IE+NP IHGTF+REA ++F EF+P+
Sbjct: 217 DDEGNRFLVHSIFHSEGRWLIERNPRIHGTFSREAVVLFDEFNPK 261

BLAST of CaUC06G118260 vs. ExPASy TrEMBL
Match: A0A5A7V6K4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00420 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-11
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 2  IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
          I   N KGN F VQ+V+  EGRW  E+N NIHG+FTR+A + F EFD E E Y F+  +A
Sbjct: 25 INIMNSKGNIFTVQTVSFTEGRWFKERNANIHGSFTRQAALEFNEFDFEAEKYSFMGFVA 84

Query: 62 VPPLK 67
           PP K
Sbjct: 85 TPPEK 89

BLAST of CaUC06G118260 vs. ExPASy TrEMBL
Match: A0A5A7THF9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00120 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 2   IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
           I  +++K N F VQ+++  EGRW  E+N NIHG+FTR+A + F EFD E + Y F+   A
Sbjct: 112 INITDNKNNIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTA 171

Query: 62  VPPLK 67
            PP K
Sbjct: 172 TPPKK 176

BLAST of CaUC06G118260 vs. ExPASy TrEMBL
Match: A0A5D3CAI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00620 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-08
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 2  IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
          I  ++ KGN F VQ+V+  EGR   E+N NIHG+FTR+A + F EFD + E Y F+  +A
Sbjct: 25 IYITDSKGNIFTVQTVSFTEGRCFKERNANIHGSFTRQAALEFNEFDFDAEKYPFMGFVA 84

Query: 62 VPPLK 67
           PP K
Sbjct: 85 TPPEK 89

BLAST of CaUC06G118260 vs. ExPASy TrEMBL
Match: A0A5D3DT94 (Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 2   IGFSNDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPEMENYCFIENIA 61
           I   + KGN F +Q+V+  E RW  E+N NIH  FTR+A + F EFD E E Y F+  + 
Sbjct: 66  INIKDSKGNIFTIQTVSFTEERWFKERNANIHSYFTRQAALEFNEFDFEAEKYSFMGFVV 125

Query: 62  VPPLK 67
            PP K
Sbjct: 126 TPPKK 130

BLAST of CaUC06G118260 vs. ExPASy TrEMBL
Match: A0A5D3D5E9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00670 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 0

Query: 6   NDKGNQFLVQSVAILEGRWIIEQNPNIHGTFTREATMVFYEFDPE 51
           +D+GN+FLV S+   EGRW+IE+NP IHGTF+REA ++F EF+P+
Sbjct: 217 DDEGNRFLVHSIFHSEGRWLIERNPRIHGTFSREAVVLFDEFNPK 261

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063733.17.5e-1153.85hypothetical protein E6C27_scaffold1290G00140 [Cucumis melo var. makuwa] >TYK109... [more]
KAA0040709.14.1e-0947.69hypothetical protein E6C27_scaffold529G00290 [Cucumis melo var. makuwa] >TYK1427... [more]
TYK07346.14.5e-0849.23hypothetical protein E5676_scaffold202G00620 [Cucumis melo var. makuwa][more]
KAA0047508.15.9e-0846.15putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK26480.1 putative ami... [more]
KAA0057199.17.7e-0860.00hypothetical protein E6C27_scaffold280G00320 [Cucumis melo var. makuwa] >TYK1876... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V6K43.6e-1153.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7THF92.0e-0947.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CAI52.2e-0849.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DT942.9e-0846.15Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5D3D5E93.7e-0860.00DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC06G118260.1CaUC06G118260.1mRNA