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CaUC06G114860 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAGAGTATTCATGTGGGATTTTTTCAGATTTTGTACGTGTGATACATGTTCCCTTAGCATTTCGAGTAACTCCTCAACCGAGAGTTCCAATTGAGGAAGCAAGGGCCGCTATAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACTGATGGAGAATTCAAGTATTGTATACGTCATTAGTCCGATCCTTTGTAGGAACTACCCGTAATAACGAACTTGTGATATCTATCTAGTGTGATGTATGGAATATATGACAAAGGTGGAGTTTTAGAGTATTTCTATTGCTCGGTCATGTCATATACGTCCGAGTCATCGTTTTTTTCACCAAAAAAGAAGAACTTTCATTATTATTCATTGTTAATAATGGTAAGAAACGAAAAAATTTCTTTGTTGAGTAATAACTTAATTCTTTACTAAAATACTATATTATAAATATCAATAACCCATTGAGTTCTTATCAATGATTGAAGATAAGAAAAATGAAAAGAACCTTTTTCCGGGTTTCGAATTGACACAAAAACTAAAGAAGAGATCTTGGCGGAATTGCCAGATATGGAATTGAGCACAATTTTTCAAAGAAATAACCCACTTGTTTCTCACGCCAATGTTTTTCAGAGAAGTACATCATGTAATAAAAAAAGTTGATCTTATTGAGAAATCGATGTCAAATCACCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTCGCTGGAATATTATTAAAAATGGGAGCACATGGATTGGTTCGGATCAATATGGAATTATTACCCCATGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCCTCTATTTTCTATTCCTTCACTGTTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCTGATCCTTATGGATTAACCGGAAGGTATCTAGATCATTAG ATGGTAGAGTATTCATGTGGGATTTTTTCAGATTTTGTACGTGTGATACATGTTCCCTTAGCATTTCGAGTAACTCCTCAACCGAGAGTTCCAATTGAGGAAGCAAGGGCCGCTATAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACTGATGGAGAATTCAAATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTCGCTGGAATATTATTAAAAATGGGAGCACATGGATTGGTTCGGATCAATATGGAATTATTACCCCATGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCCTCTATTTTCTATTCCTTCACTGTTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCTGATCCTTATGGATTAACCGGAAGGTATCTAGATCATTAG ATGGTAGAGTATTCATGTGGGATTTTTTCAGATTTTGTACGTGTGATACATGTTCCCTTAGCATTTCGAGTAACTCCTCAACCGAGAGTTCCAATTGAGGAAGCAAGGGCCGCTATAGCTGCTGAATCTTCTACTGGTACATGGACAACTGTGTGGACTGATGGAGAATTCAAATACCCACGGAGAGGCACATTACAGTACTTGTATGCTTCTCGCTGGAATATTATTAAAAATGGGAGCACATGGATTGGTTCGGATCAATATGGAATTATTACCCCATGCCCATTCTATCTTTTCACCCTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACATCTTCGGGTCAACGCTAGATCCTCTATTTTCTATTCCTTCACTGTTCTCAGGGTTGGGTTGCTTTGGTTTTGATGCATTTCATGTAACCGGATTGTATGATCCGGGAATCTGGGTATCTGATCCTTATGGATTAACCGGAAGGTATCTAGATCATTAG MVEYSCGIFSDFVRVIHVPLAFRVTPQPRVPIEEARAAIAAESSTGTWTTVWTDGEFKYPRRGTLQYLYASRWNIIKNGSTWIGSDQYGIITPCPFYLFTLVDHSRHNSNNLCSFNIFGSTLDPLFSIPSLFSGLGCFGFDAFHVTGLYDPGIWVSDPYGLTGRYLDH Homology
BLAST of CaUC06G114860 vs. NCBI nr
Match: RXI09986.1 (hypothetical protein DVH24_037507 [Malus domestica]) HSP 1 Score: 106.3 bits (264), Expect = 2.6e-19 Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0
BLAST of CaUC06G114860 vs. NCBI nr
Match: YP_009724473.1 (NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal] >QGT77109.1 NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal]) HSP 1 Score: 94.4 bits (233), Expect = 1.0e-15 Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0
BLAST of CaUC06G114860 vs. NCBI nr
Match: YP_009679141.1 (NADH-plastoquinone oxidoreductase subunit 4 [Teucrium mascatense] >QDF64497.1 NADH-plastoquinone oxidoreductase subunit 4 [Teucrium mascatense]) HSP 1 Score: 94.4 bits (233), Expect = 1.0e-15 Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0
BLAST of CaUC06G114860 vs. NCBI nr
Match: QXJ79888.1 (NADH dehydrogenase subunit D [Gymnadenia crassinervis]) HSP 1 Score: 92.8 bits (229), Expect = 3.0e-15 Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0
BLAST of CaUC06G114860 vs. NCBI nr
Match: VVW91355.1 (unnamed protein product, partial [Nymphaea colorata]) HSP 1 Score: 87.8 bits (216), Expect = 9.6e-14 Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy Swiss-Prot
Match: Q2QD63 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 8.5e-13 Identity = 33/43 (76.74%), Postives = 34/43 (79.07%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy Swiss-Prot
Match: A8SEC9 (Photosystem II CP47 reaction center protein OS=Ceratophyllum demersum OX=4428 GN=psbB PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 9.4e-12 Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy Swiss-Prot
Match: A6MMN3 (Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbB PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 9.4e-12 Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy Swiss-Prot
Match: A7Y3H4 (Photosystem II CP47 reaction center protein OS=Ipomoea purpurea OX=4121 GN=psbB PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 9.4e-12 Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy Swiss-Prot
Match: Q9BBQ8 (Photosystem II CP47 reaction center protein OS=Lotus japonicus OX=34305 GN=psbB PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 9.4e-12 Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy TrEMBL
Match: A0A498KQZ6 (Proton_antipo_M domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_037507 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19 Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy TrEMBL
Match: A0A4Y6I5A8 (NADH-plastoquinone oxidoreductase subunit 4 OS=Teucrium mascatense OX=2172029 GN=ndhD PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16 Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy TrEMBL
Match: A0A650F2C7 (NADH-plastoquinone oxidoreductase subunit 4 OS=Senegalia senegal OX=138043 GN=ndhD PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16 Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy TrEMBL
Match: A0A5K1HUQ2 (Proton_antipo_M domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30908 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 4.7e-14 Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 0
BLAST of CaUC06G114860 vs. ExPASy TrEMBL
Match: A0A3P6E4B1 (Uncharacterized protein OS=Brassica oleracea OX=3712 GN=BOLC9T55377H PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 7.9e-14 Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
BLAST of CaUC06G114860 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B ) HSP 1 Score: 70.5 bits (171), Expect = 1.5e-12 Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of CaUC06G114860 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases ) HSP 1 Score: 66.2 bits (160), Expect = 2.8e-11 Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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