CaUC05G103880 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G103880
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	50S ribosomal protein L18
Location	Ciama_Chr05: 34516814 .. 34521812 (+)
RNA-Seq Expression	CaUC05G103880
Synteny	CaUC05G103880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGAAACCCAAGAAAAGGGGTGCGATGAGAGAGACATCTCTGTTGAGAATAAGCCTTTCGAGTGCAGAAGAGAGGTCAGAAGTGTCAGGTTGGGAAGCCATTGATGAGAAAAGTGAAGGAATGAGAGAGTGGGGAAATTGAAGAAGAAAGGGAATGAGGGGAAAGGGGATTGGGAGAGGGTTTTAAGAGGGGAAGTTGAAGAAGGAAGAAGAAGGTTGGAGAAGAATCTGGAAGTTTTGAAGAACCAATGGTAGAAGGGATCAAAATTGATGAGCAATTGGAATTGTTAGCCTTTTTGGGGCAAGCCATCATCATACACAAGATATTTAGTATAAAACTCAATAAATAAATAATGTCTTTTTTTTTTTTTTCTTTTCTTTTTTTTTTTTTAGTTCAACCTGTGATTGGGAGAAAGTTAAAAATAAATATTTTTAGTCTCTCAAATTTCAATTCTACAAAAAGTTTGTTCAATTTTAGTATGGATTAATTTAGTCTCATATTTTAAATTTTGTAGTAATTTATCAATTTGGTAATCATTTAGTTTTCAATTTTTTGCTTTTGAAAATTAAATCTATAACGACTACTTCTACCTCAAAATTTCTTTCTTTATTATCTACATTTTACCAATAGTTAAATCAAGTCAAAATTTGAAAACTAAAAAAAAAAACACTTTAAAAAATGATATTTGTTTTAAACGGCAAAACTGCTAGAAATATTTATAAATATAACTATATTTGTAAATATTTGTACTTATTTTGTTATATTTGAAAATAACCCTTTTAAAATTTTATTTTTGTTTTTGGAATTTGTCTAAGAATTTAACCATTGTACTTAATAAATATACAAATCATTATAAGAAATGAGGAGGAAATACACTTAATTTTCAAAAACCAAAAACAAAAAACAAAATGGTTATCAAATAGGATCAATCTTCAATTATAAGAGAGAGTGATGTATTGCTAAACTAACCTTATGATATAACTGATTAAGTACTAAACATGTTTATGAAAAAATAGATAATAAAAGCTAAATGCTTAGATACTTGTGGTTGAATCTTAGAGGATTGAATGATTTTGAAAGCATTAAAATTAGTTCAGTAAATTTTAAAATCACTTTAAAATATATTTTTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTAGTTCAACCTGTGATTGGGAGAAAGTTAAAAATAAATATTTTTAGTCTCTCAAATTTCAATTCTACAAAAAGTTTGTTCAATTTTAGTATGGATTAATTTAGTCTCATATTTTAAATTTTGTAGTAATTTATCAATTTGGTAATCATTTAGTTTTCAATTTTTTGCTTTTGAAAATTAAATCTATAACGACTACTTCTACCTCAAAATTTCTTTCTTTATTATCTACATTTTACCAATAGTTAAATCAAGTCAAAATTTGAAAACTAAAAAAAAAAACACTTTAAAAAATGATATTTGTTTTAAACGGCAAAACTGCTAGAAATATTTATAAATATAACTATATTTGTAAATATTTGTACTTATTTTGTTATATTTGAAAATAACCCTTTTAAAATTTTATTTTTGTTTTTGGAATTTGTCTAAGAATTTAACCATTGTACTTAATAAATATACAAATCATTATAAGAAATGAGGAGGAAATACACTTAATTTTCAAAAACCAAAAACAAAAAACAAAATGGTTATCAAATAGGATCAATCTTCAATTATAAGAGAGAGTGATGTATTGCTAAACTAACCTTATGATATAACTGATTAAGTACTAAACATGTTTATGAAAAAATAGATAATAAAAGCTAAATGCTTAGATACTTGTGGTTGAATCTTAGAGGATTGAATGATTTTGAAAGCATTAAAATTAGTTCAGTAAATTTTAAAATCACTTTAAAATATATTTTTAATTATTGAAAATTAGTATACGATGAGTTACATTTCATGTTGATTAATGAATTTGATTATAATTAATATATACTTTTCACTTAAGATAAGAAATTCAAAATCTCCGTATATTCTATCTTTATTGTACTGAAAAGAAAAGTTAAAGTAAATATGTCTTACCTCCTTATTTGTGTTGTAATATACTGATATCATGATACCATATTCCTAATTTTTTTTTTACTTAGTTATACCTTAATTTAGTTTTTTTTATAATTTATTAAAAGGATAAAAGAGCAATATACTATGCACAATTAGATAACTTTTTAATAATTTTTTTAAAAAATAAATAGTCATACAACATTTTTTTAAAAAATATCAAATAAAAGTGAAGTTTAATAGTAGAAGTATTATTATCTAAAAAAAAAAAAAAAAGGTGGGGCAAAATAGCAATACCATCCACATAGACGTGGACGTGGAGGAGGAAACGTATTTTCTCTTGCTATCACAAGGAGCTCAAGTCGCCGGCCGGGAGTATTTCAACGGCACTGCCTGATCGGCCTTTTACAGTACAGAATCAAATAGCCTCCACACAACCAAACCTCATTCGTTCCGGCGGAAAATTTGCTAGGCCGGTAGCTTCTTTTTCATCTCTCTTAGCTAAAATCTTCTCTCCCTTGTAATTAAAACTTCTGGGTTCAACTCTTGTGGGGCTTTTTCTTCATGATTTCCATTGGGTTTCGTTATTTTTTTTAGTCTTGTTTTCAATAGGGTGATTGGGTCTTGCTTGACTTTGTGTGCTCGATTGTCAATCACTTTTTCAGGGATCGCGTGCAAGGTGCTCGACAAAATTCCTGAAAGACGATGTCCCCGTCGTACAGCGTATATTGGCCATAGAAATCATTTCAAGAATGCCCTCTTTACTTCTAAATACTTTAAATTTCAAAAAAGTTTATGGTGGCATGCCTTTTCTAAATGTTCCTGGTCTTCTATCGAAGACTTCTACGCCCTTCGGGTTGCAGTTAGAGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAGTACGTGAAACAGTATGTGCATTAGCTCCTTATCTGTATGATAATCAATAAATCTTTTCCTGGACTAAGTTAGACACATACTAGCATATATCTATTATACCAAATAATGGAAGCAGTTGATTTTGTTTTATAATGAGTTCCTACATTCCGTGTAGATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACAATAAAACAGAAAGTGCAAAAATTAGAAATAGGAGATTGCAGAAAAAGGTGCGTTATCATTCGCTTTACTTCTCAGATTTTTCTTGAAGGGACTGATTTTTTTGAGAGCGAGCAAGGTTAGAAATTTATTAACAAAGCAGTTTGAAGTTAGTGTTAAGAAAGAATTGACAAGATAAGGGGGATGTAGAGACCAAGAACCAAAGTCGTATTGCTTCAATTGCAATGCACAGTATGACAATCTTAAACAGGTAGAACTTGCCTAAAAAAAATTAATTTCAGTCACTTAACTTATTTAACTTTTAAATTTGTGTGAAACAGATTCTCTTTAGGAAAAAAGAAAAAAAAAGAAAGAGGTGTATGCATCTCTAAATTTAGGTTGTGTGTAATAATTCCATGAACATCCAATTTTGTGTTTAAATAGGCCTTCAATCTATTCAACCTTTTTATAAATTATGAACTTATTTAACATAAAATTAGAAGTTTAATATTCTATTAGACACGCCATTCAATTTTATGCCTAATAGATTTGGTAATTTTTTAAAAAGACTATTGAATACGCCAAGATCAATGAAGACATAAATTTTAAAATTTAGAGACTTATTTGACATTTTTTAAAATTTAGAGATCTATTAGAAAAAAAAAATTAAAAACTTATTAAATAATTAGTGTAAAACCCATTGAAGCTTATAGCAACTTTAGAAACAAACGGAAAGTAGTGTCCTATATTGGAACCTGAACCCAACCGGCCTGTTGGGCGGCGGCGGCGACCACAAATTTTTCTGAAGAATTCGCCATGCGTGTGCGGAGAAATCATTACCAACGTCCTGAAATTTAAATGTTAGGCAATCTAAAATGTTTAAAGTATTCAATTTGAGTCGCGAATTTATGAACATTATAAAAAACTTTAATAAGCGTAAGATGTTGATACATGGAACCTATGCTAAGGGATTTTCTGCACAATTTACATATGTATTACTAACATTGAAGCTCTTTTTGTTTTTAAATTTCGTTCATTGGTAGTCATCATAGTAACAACAAAATTCTCATTACATTTGATGGTTTTCAACGGCAAGCAGTATAATGGCACTCCTACAAGGCCAAGGCTTTCAGTATTCTGTTCTGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTCCAAGTCCCTCATGTACCACCATCGTAAGTTTTCATTCTTAAGGTCTGCCTTGAAATTAAGACCACAAAACTCCCATTAAGAAACTATTGTTAAATATGAAAGACCTAAGTTTTCTCTTGTTTTGGTGATTACAGGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGGCATGCGAGGACTTGAACATACACGAAATATCATCTTATGATCGAAATGGGTTTGCTCGTGGAGAGAGAATGCAAGCCTTCGAAATTGCAATATCGCGCTATGGGTTCTTACAATGATAGATAATACCAAAAGTGAAGGCAAGTTGTAAATGTAAATGCGGAGAAAAAGGGTTGCTAGGACAATAGAAATCCGAGATAATCAATAGAAATCTATCATTGATCAAACTTAACTTAACCCAAATCATTTTTAGCACAAGAAAATGAATTGTGATTAAGCATGATTTGGTAAAATTCAATTGATCGCCTATTGTTACTATATACTCACTGTACAAGCTACAACTCTCATTCTAACAAATCTCTCTCGGTC

mRNA sequence

GGCGAAACCCAAGAAAAGGGGTGCGATGAGAGAGACATCTCTGTTGAGAATAAGCCTTTCGAGTGCAGAAGAGAGGGATCGCGTGCAAGGTGCTCGACAAAATTCCTGAAAGACGATGTCCCCGTCGTACAGCGTATATTGGCCATAGAAATCATTTCAAGAATGCCCTCTTTACTTCTAAATACTTTAAATTTCAAAAAAGTTTATGGTGGCATGCCTTTTCTAAATGTTCCTGGTCTTCTATCGAAGACTTCTACGCCCTTCGGGTTGCAGTTAGAGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACAATAAAACAGAAAGTGCAAAAATTAGAAATAGGAGATTGCAGAAAAAGGGGGATGTAGAGACCAAGAACCAAAGTCGTATTGCTTCAATTGCAATGCACATCATCATAGTAACAACAAAATTCTCATTACATTTGATGGTTTTCAACGGCAAGCAGTATAATGGCACTCCTACAAGGCCAAGGCTTTCAGTATTCTGTTCTGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTCCAAGTCCCTCATGTACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGGCATGCGAGGACTTGAACATACACGAAATATCATCTTATGATCGAAATGGGTTTGCTCGTGGAGAGAGAATGCAAGCCTTCGAAATTGCAATATCGCGCTATGGGTTCTTACAATGATAGATAATACCAAAAGTGAAGGCAAGTTGTAAATGTAAATGCGGAGAAAAAGGGTTGCTAGGACAATAGAAATCCGAGATAATCAATAGAAATCTATCATTGATCAAACTTAACTTAACCCAAATCATTTTTAGCACAAGAAAATGAATTGTGATTAAGCATGATTTGGTAAAATTCAATTGATCGCCTATTGTTACTATATACTCACTGTACAAGCTACAACTCTCATTCTAACAAATCTCTCTCGGTC

Coding sequence (CDS)

GGCGAAACCCAAGAAAAGGGGTGCGATGAGAGAGACATCTCTGTTGAGAATAAGCCTTTCGAGTGCAGAAGAGAGGGATCGCGTGCAAGGTGCTCGACAAAATTCCTGAAAGACGATGTCCCCGTCGTACAGCGTATATTGGCCATAGAAATCATTTCAAGAATGCCCTCTTTACTTCTAAATACTTTAAATTTCAAAAAAGTTTATGGTGGCATGCCTTTTCTAAATGTTCCTGGTCTTCTATCGAAGACTTCTACGCCCTTCGGGTTGCAGTTAGAGCCATTTAGCTTTCCCAGCTTGAAAACTAAAAATTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACAATAAAACAGAAAGTGCAAAAATTAGAAATAGGAGATTGCAGAAAAAGGGGGATGTAGAGACCAAGAACCAAAGTCGTATTGCTTCAATTGCAATGCACATCATCATAGTAACAACAAAATTCTCATTACATTTGATGGTTTTCAACGGCAAGCAGTATAATGGCACTCCTACAAGGCCAAGGCTTTCAGTATTCTGTTCTGATAAACAGTTGTATGCAATGTTGGTTGACGATCAGAACAAGAAGTGCTTGTTTTATGGAAGCACCTTACAAAAATCTATGCGTCCAAGTCCCTCATGTACCACCATCGAAGCTGCTCAACATGTTGGTGAAGAACTTGTGAAGGCATGCGAGGACTTGAACATACACGAAATATCATCTTATGATCGAAATGGGTTTGCTCGTGGAGAGAGAATGCAAGCCTTCGAAATTGCAATATCGCGCTATGGGTTCTTACAATGA

Protein sequence

GETQEKGCDERDISVENKPFECRREGSRARCSTKFLKDDVPVVQRILAIEIISRMPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQARGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ

Homology

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BLAST of CaUC05G103880 vs. NCBI nr
Match: XP_038891854.1 (50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida])

HSP 1 Score: 372.1 bits (954), Expect = 4.1e-99
Identity = 194/245 (79.18%), Postives = 200/245 (81.63%), Query Frame = 0


Query: 26  GSRARCSTKFLKDDVPVVQRILAIEIISRMPSLLLNTLNFKKVYGGMPFLNVPGLLSKTS 85
           GSRARCSTKFL D+VPVVQRIL IEIISRMPSLLLNTLN KKVYGGM FLN PGLLSKTS
Sbjct: 18  GSRARCSTKFLNDEVPVVQRILRIEIISRMPSLLLNTLNLKKVYGGMAFLNGPGLLSKTS 77

Query: 86  TPFGLQLEPFSFPSLKTKNCDVKPLMIQARGNNKTESAKIRNRRLQKKGDVETKNQSRIA 145
           TPFGLQ +PF+FPSLKT+NCDVKPL IQARGN+KTESAKI NRRLQKK            
Sbjct: 78  TPFGLQSKPFNFPSLKTRNCDVKPLTIQARGNSKTESAKITNRRLQKK------------ 137

Query: 146 SIAMHIIIVTTKFSLHLMVFNGKQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGS 205
                                   YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGS
Sbjct: 138 ------------------------YNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGS 197

Query: 206 TLQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISR 265
           TLQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGE+MQAFEIAISR
Sbjct: 198 TLQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGEKMQAFEIAISR 226

Query: 266 YGFLQ 271
           YG LQ
Sbjct: 258 YGLLQ 226

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BLAST of CaUC05G103880 vs. NCBI nr
Match: XP_038891856.1 (50S ribosomal protein L18 isoform X2 [Benincasa hispida])

HSP 1 Score: 322.8 bits (826), Expect = 2.9e-84
Identity = 168/216 (77.78%), Postives = 173/216 (80.09%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           MPSLLLNTLN KKVYGGM FLN PGLLSKTSTPFGLQ +PF+FPSLKT+NCDVKPL IQA
Sbjct: 1   MPSLLLNTLNLKKVYGGMAFLNGPGLLSKTSTPFGLQSKPFNFPSLKTRNCDVKPLTIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RGN+KTESAKI NRRLQKK                                    YNGTP
Sbjct: 61  RGNSKTESAKITNRRLQKK------------------------------------YNGTP 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
           TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC
Sbjct: 121 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
           EDLNIHEISSYDRNGFARGE+MQAFEIAISRYG LQ
Sbjct: 181 EDLNIHEISSYDRNGFARGEKMQAFEIAISRYGLLQ 180

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BLAST of CaUC05G103880 vs. NCBI nr
Match: XP_022987454.1 (uncharacterized protein LOC111484997 [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-80
Identity = 161/216 (74.54%), Postives = 172/216 (79.63%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           MPSL LNT+NF+KV GGM FLNVPGLLSKTSTPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RGN+KTESAK+RNRRLQKK                                    YNG+ 
Sbjct: 61  RGNSKTESAKVRNRRLQKK------------------------------------YNGSS 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
           T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC
Sbjct: 121 TKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
           EDLNIHEISSYDRNGFARGE+MQAFEIAISRYGFLQ
Sbjct: 181 EDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

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BLAST of CaUC05G103880 vs. NCBI nr
Match: XP_023547360.1 (uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.6 bits (784), Expect = 2.1e-79
Identity = 159/216 (73.61%), Postives = 170/216 (78.70%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           MPSL LNT+NF+KV GGM FLNVPGLLSKTSTPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RGN+KTESAK+RNRR QKK                                    YNG+ 
Sbjct: 61  RGNSKTESAKVRNRRFQKK------------------------------------YNGSS 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
           T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC
Sbjct: 121 TKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
           EDLNIHEISSYDRNGFARGE+MQAFEIAIS YGFLQ
Sbjct: 181 EDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

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BLAST of CaUC05G103880 vs. NCBI nr
Match: XP_022151144.1 (uncharacterized protein LOC111019142 [Momordica charantia] >XP_022151145.1 uncharacterized protein LOC111019142 [Momordica charantia])

HSP 1 Score: 304.7 bits (779), Expect = 8.0e-79
Identity = 155/216 (71.76%), Postives = 171/216 (79.17%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           MP  LLNTL+F+KVYGGMP +N+PGLLSK+STPFG Q +PF+FPSLK+KNCD+KPL+IQA
Sbjct: 1   MPLSLLNTLDFQKVYGGMPLVNLPGLLSKSSTPFGFQSKPFNFPSLKSKNCDLKPLIIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RG++K ESAKIRNRR+QKK                                    YNGTP
Sbjct: 61  RGHSKPESAKIRNRRMQKK------------------------------------YNGTP 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
            RPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP+PSCTTIEAAQ+VGEELVK C
Sbjct: 121 KRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPNPSCTTIEAAQYVGEELVKTC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
           EDLNIHEISSYDRNGFARGE+MQAFEIAIS YGFLQ
Sbjct: 181 EDLNIHEISSYDRNGFARGEKMQAFEIAISHYGFLQ 180

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BLAST of CaUC05G103880 vs. ExPASy Swiss-Prot
Match: A9FGF8 (50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=rplR PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.4e-11
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 0


Query: 168 KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS-PSCTTIEAAQHV 227
           K+  GTP RPRLSVF S K +YA ++DD + K L + STL K ++ S      +EAA+ V
Sbjct: 17  KKVEGTPERPRLSVFRSSKHIYAQVIDDVSGKTLAHASTLSKDLKGSLDEDNKVEAAKKV 76

Query: 228 GEELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISRYG 268
           G  + + C++  I ++  +DRNG+    R+ A   A    G
Sbjct: 77  GALIARICKERQIDKV-VFDRNGYLYHGRVSALAQAAREAG 116

[Close]

BLAST of CaUC05G103880 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-10
Identity = 37/105 (35.24%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 168 KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQ 227
           K+  GTP RPRL VF S+K LY  ++DD     L   ST+QK++  +    +  T+E AQ
Sbjct: 62  KKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQ 121

Query: 228 HVGEELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISRYGFL 270
            +GE + K+C +  I ++ ++DR G+    R++A   A   +G +
Sbjct: 122 KIGEMIAKSCLEKGITKV-AFDRGGYPYHGRVKALADAAREHGLV 165

[Close]

BLAST of CaUC05G103880 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.8e-10
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 168 KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQ 227
           K+ +GT  RPRLSVF S+K LYA ++DD     L   ST+ KS+       +  T+E AQ
Sbjct: 66  KKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQ 125

Query: 228 HVGEELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISRYG 268
            +GE + K+C +  I ++  +DR GF    R++A   A    G
Sbjct: 126 KIGEVIAKSCLEKGITKV-VFDRGGFLYHGRIKALADAARENG 167

[Close]

BLAST of CaUC05G103880 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-10
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 168 KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQ 227
           K+ NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+
Sbjct: 66  KKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAK 125

Query: 228 HVGEELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISRYG 268
            VGE + K+C +  I ++ ++DR G+    R++A   A   +G
Sbjct: 126 KVGEVIAKSCLEKGITKV-AFDRGGYPYHGRIEALAAAAREHG 167

[Close]

BLAST of CaUC05G103880 vs. ExPASy Swiss-Prot
Match: A1ALV7 (50S ribosomal protein L18 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rplR PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-08
Identity = 39/102 (38.24%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 168 KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVG 227
           K+  GT  RPRL+VF S + +YA L+DD     L   STL  S         I AA HVG
Sbjct: 20  KKIVGTAQRPRLNVFKSARHIYAQLIDDTAGITLASCSTLSTSAESLSYTGNIAAAVHVG 79

Query: 228 EELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISRYGFL 270
           +E+    ++ NI  +  +DRNGF    R++A   A    G L
Sbjct: 80  KEIAGLAKEKNITAV-VFDRNGFLYHGRIKALADAARESGLL 120

[Close]

BLAST of CaUC05G103880 vs. ExPASy TrEMBL
Match: A0A6J1JIY0 (uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 5.4e-81
Identity = 161/216 (74.54%), Postives = 172/216 (79.63%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           MPSL LNT+NF+KV GGM FLNVPGLLSKTSTPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTSTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RGN+KTESAK+RNRRLQKK                                    YNG+ 
Sbjct: 61  RGNSKTESAKVRNRRLQKK------------------------------------YNGSS 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
           T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC
Sbjct: 121 TKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
           EDLNIHEISSYDRNGFARGE+MQAFEIAISRYGFLQ
Sbjct: 181 EDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CaUC05G103880 vs. ExPASy TrEMBL
Match: A0A6J1DC55 (uncharacterized protein LOC111019142 OS=Momordica charantia OX=3673 GN=LOC111019142 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.9e-79
Identity = 155/216 (71.76%), Postives = 171/216 (79.17%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           MP  LLNTL+F+KVYGGMP +N+PGLLSK+STPFG Q +PF+FPSLK+KNCD+KPL+IQA
Sbjct: 1   MPLSLLNTLDFQKVYGGMPLVNLPGLLSKSSTPFGFQSKPFNFPSLKSKNCDLKPLIIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RG++K ESAKIRNRR+QKK                                    YNGTP
Sbjct: 61  RGHSKPESAKIRNRRMQKK------------------------------------YNGTP 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
            RPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP+PSCTTIEAAQ+VGEELVK C
Sbjct: 121 KRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPNPSCTTIEAAQYVGEELVKTC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
           EDLNIHEISSYDRNGFARGE+MQAFEIAIS YGFLQ
Sbjct: 181 EDLNIHEISSYDRNGFARGEKMQAFEIAISHYGFLQ 180

[Close]

BLAST of CaUC05G103880 vs. ExPASy TrEMBL
Match: A0A6J1GYP6 (uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC111458689 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.9e-79
Identity = 158/216 (73.15%), Postives = 169/216 (78.24%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           MPSL LNT+NF+KV GGM FLNVPGLLSKT TPF  Q +PF+FPSLK ++CDVKPLMIQA
Sbjct: 1   MPSLPLNTINFEKVNGGMHFLNVPGLLSKTPTPFWFQSKPFNFPSLKRRHCDVKPLMIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RGN+KTESAK+RNRR QKK                                    YNG+ 
Sbjct: 61  RGNSKTESAKVRNRRFQKK------------------------------------YNGSS 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
           T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC
Sbjct: 121 TKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
           EDLNIHEISSYDRNGFARGE+MQAFEIAIS YGFLQ
Sbjct: 181 EDLNIHEISSYDRNGFARGEKMQAFEIAISGYGFLQ 180

[Close]

BLAST of CaUC05G103880 vs. ExPASy TrEMBL
Match: A0A1S3BEE0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.8e-77
Identity = 158/216 (73.15%), Postives = 166/216 (76.85%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           M SLLLNT NFKKV+GG+ F NV GLL KTS PFGLQ + F F SLKTK+CDVKPLMIQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RGN+KTESAK+RNRRLQKK                                    YNGTP
Sbjct: 61  RGNSKTESAKVRNRRLQKK------------------------------------YNGTP 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
           TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP+ SCTTIEAAQHVGEELVK C
Sbjct: 121 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTLSCTTIEAAQHVGEELVKVC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
            DLNIHEISSYDRNGFARGE+MQAFEIAISRYGFLQ
Sbjct: 181 GDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CaUC05G103880 vs. ExPASy TrEMBL
Match: A0A5D3D244 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00380 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.8e-77
Identity = 158/216 (73.15%), Postives = 166/216 (76.85%), Query Frame = 0


Query: 55  MPSLLLNTLNFKKVYGGMPFLNVPGLLSKTSTPFGLQLEPFSFPSLKTKNCDVKPLMIQA 114
           M SLLLNT NFKKV+GG+ F NV GLL KTS PFGLQ + F F SLKTK+CDVKPLMIQA
Sbjct: 1   MSSLLLNTSNFKKVHGGVAFQNVSGLLLKTSMPFGLQSKSFDFRSLKTKHCDVKPLMIQA 60

Query: 115 RGNNKTESAKIRNRRLQKKGDVETKNQSRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTP 174
           RGN+KTESAK+RNRRLQKK                                    YNGTP
Sbjct: 61  RGNSKTESAKVRNRRLQKK------------------------------------YNGTP 120

Query: 175 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKAC 234
           TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP+ SCTTIEAAQHVGEELVK C
Sbjct: 121 TRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPTLSCTTIEAAQHVGEELVKVC 180

Query: 235 EDLNIHEISSYDRNGFARGERMQAFEIAISRYGFLQ 271
            DLNIHEISSYDRNGFARGE+MQAFEIAISRYGFLQ
Sbjct: 181 GDLNIHEISSYDRNGFARGEKMQAFEIAISRYGFLQ 180

[Close]

BLAST of CaUC05G103880 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.8e-44
Identity = 101/188 (53.72%), Postives = 118/188 (62.77%), Query Frame = 0


Query: 83  KTSTPFGLQLEPF-SFPSLKTKNCDVKPLMIQARGNNKTESAKIRNRRLQKKGDVETKNQ 142
           + S   G +L+P+  FP   T    VKP +I+ARGN + ES K RNRR +KK        
Sbjct: 13  RVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKK-------- 72

Query: 143 SRIASIAMHIIIVTTKFSLHLMVFNGKQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCL 202
                                       + GT T+PRLSVFCSDKQLYAMLVDD NKKCL
Sbjct: 73  ----------------------------FTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCL 132

Query: 203 FYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACEDLNIHEISSYDRNGFARGERMQAFEI 262
           FY STLQKS+R  P CT IEAA+ VGEEL+KA  DL I+EISSYDRNG  RGERMQAFEI
Sbjct: 133 FYASTLQKSIRGDPPCTVIEAAKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEI 164

Query: 263 AISRYGFL 270
           AI+++GFL
Sbjct: 193 AIAQHGFL 164

[Close]

BLAST of CaUC05G103880 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 66.2 bits (160), Expect = 4.5e-11
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 168 KQYNGTPTRPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQ 227
           K+ NGT  RPRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+
Sbjct: 66  KKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAK 125

Query: 228 HVGEELVKACEDLNIHEISSYDRNGFARGERMQAFEIAISRYG 268
            VGE + K+C +  I ++ ++DR G+    R++A   A   +G
Sbjct: 126 KVGEVIAKSCLEKGITKV-AFDRGGYPYHGRIEALAAAAREHG 167

The following BLAST results are available for this feature:

BLAST of CaUC05G103880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891854.1	4.1e-99	79.18	50S ribosomal protein L18 isoform X1 [Benincasa hispida] >XP_038891855.1 50S rib...	[more]
XP_038891856.1	2.9e-84	77.78	50S ribosomal protein L18 isoform X2 [Benincasa hispida]	[more]
XP_022987454.1	1.1e-80	74.54	uncharacterized protein LOC111484997 [Cucurbita maxima]	[more]
XP_023547360.1	2.1e-79	73.61	uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo]	[more]
XP_022151144.1	8.0e-79	71.76	uncharacterized protein LOC111019142 [Momordica charantia] >XP_022151145.1 uncha...	[more]

BLAST of CaUC05G103880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9FGF8	4.4e-11	38.61	50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=...	[more]
P82195	1.3e-10	35.24	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
Q8SAY0	4.8e-10	37.86	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9SX68	6.3e-10	37.86	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
A1ALV7	3.5e-08	38.24	50S ribosomal protein L18 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 1038...	[more]

BLAST of CaUC05G103880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIY0	5.4e-81	74.54	uncharacterized protein LOC111484997 OS=Cucurbita maxima OX=3661 GN=LOC111484997...	[more]
A0A6J1DC55	3.9e-79	71.76	uncharacterized protein LOC111019142 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1GYP6	3.9e-79	73.15	uncharacterized protein LOC111458689 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A1S3BEE0	2.8e-77	73.15	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103489126 PE=4 SV=1	[more]
A0A5D3D244	2.8e-77	73.15	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CaUC05G103880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14205.1	1.8e-44	53.72	Ribosomal L18p/L5e family protein	[more]
AT1G48350.1	4.5e-11	37.86	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 169..259 e-value: 6.7E-13 score: 49.0
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 82..269
None	No IPR available	GENE3D	3.30.420.100		coord: 169..269 e-value: 8.4E-19 score: 70.0
None	No IPR available	PANTHER	PTHR12899:SF8	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 82..269
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 172..268 e-value: 8.56182E-21 score: 82.5879
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 175..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G103880.1	CaUC05G103880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome