CaUC05G101470 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G101470
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionReplication protein A 14 kDa subunit B-like
LocationCiama_Chr05: 32398012 .. 32401443 (-)
RNA-Seq ExpressionCaUC05G101470
SyntenyCaUC05G101470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGAAATAGATTTCGACAATAACAATATTTGAGAGTGACAGTTCGTAAATCTCTCTCAAATATGTTTTTAATAATTTTGATAATATAAAAAATACATATGAAAATATAAAATTAAATATTAAATAGATTTTGAGTAATTAAAAATATATTTCAGAGTTATTTTGAACACGAACAATAGTAATTTTTATAATTTTAAAATCATTTCCAAACTTGCACTAAGCCTACTTATTCCTTAAATAAAGGCTTATTTCGAACCAGGATAAATCACAAATAGTTCGTTTGATAACGTTCTCGTTTCCTGTTTTTTGTTTTTTGTTTATTCTTTCTTTAGAACAAGAAACAAAACAATGTTAGATAACTATTATTATTTCTTGTTTCTTAGAAAAAAGAAACAGAAATATAAATTTGTTTGATAGCTATTTTATTGTTTATGGTATAAATATAGAAAAATTATTTTTGTAAATAACAATATTAATAAAGAAAAATAAAAATAAAAAAATGTAATGAAAAAAATAGATTCTTCAAAAGGTGAGAATGATTGCTTAGAAACAGAATAAACTACTTTTTGTTACTACTCAATTTTTGCCCATTTTCTAGAAATATTTTTTAAAATTTAAAAATAACAAACGAAAATAGTTATCAATTAAGTTTATAAGAAAATATGAAACGGAACAACATTATCACATCGGCTCAAAATTTGGCCTTTCATCTCGTTCCCGCCAATATGTCTCCTCGGTAAAAAACCGCCCACAAATTCCCGCGTCTTCGTAGTTCGTCACTTGAAATTCTCAATCTTACTCCGAGCTCTCTCTCTCCCTCTCTCCATCTCTCTGTATCCCGCGCGGAAGAACCATAGTCTCACAGGTACGCGTTTGAACTCGTTCTGTGCCAGCAGATTTAGGGTTTGAGGCTTTCTGCTACTTAGTTCGTCCCGTTATCAACAATTTCAACTTCTTCTATTGTATGTAGGTAGTTGTTTTGATGATTTCCTCCATAACCATAGGCTGTGATGATATTTTGTGAAATCGATCGAAGTCTTTCGTTCTGCAGCTATATGAATCGAAATTTATTTTACTAATTTGATAGATTGTAATCTTCTTTGCCCAGAGCATTGCAATTGATTTCTGGTCTCGTTGTAGTTGTATGTTCTATTAGCCATGGAAATTAAAATTCCTTTGCCGACAAGCCTTTCTGTGTTCGTTTCTTTTAGAAGTGTATTCAGTTTCTGCACTTATGCTATCGATTTCTGCTTTTAGTCTTCGCTTCTCGTACGATTCTGCTATTCTCAACACGAACAGAGTTACTAGGTCATGATCTCAATTGTTTGTTGTGCTAAATGTTATAGCTGCATTAAGTTGTTTGTTTCTGATGGTTTATCATTGAGACTAGAAGATGAAGTATATTTGGTGAAAGGCATTTTTCTTATGCAGAGTAGAGTTCTTAATTTGCTTTCGAACGTTTTCGTTTTCTCCCTTGCATGTAGGAGTGCTATCATTATAGATTCTTAAATTACAATCTAAACATTCGGGTTGTATCAATTCAAACCCAAACTAATAATTTTATCTATCTAAACTTTAAAATTTGAAAAGTGAATCAATTTAGACTTTTCATATTAGAATTAGTATTGAAACTGTTAATACACAATTTTCATACTTGCATAAGACTTTTCTTTAAATCTAAATGATCTTTCATCTTTTTGTCTTCCCTTTTTTTAATACTTATTTAGAAAGTATTACCTAATAACTTATCTTGCTACTTTGGTAAGATGTTGGGATAACCGGATAAAAATAATATTATTTAGGTGATGTTGAGCTGGTTTGAAATGGAATCAAGTGAAAATAGCTATAGATTACTAATAAATGGTCTAAATCGATTCAAATTCTAAGCTTTAAATTGATACAATTATTAGTTTGAAGTTTTACTGATATAACCTAAAATTTAGGAGTACAGACTGATTTTTTCCTAGATTTATTCAGTTTGTAAGTTTAGACATTCACATGATTTTTGTTATCATATTTCCAGTCACTTTAGTTTTCTTTGAATATTACACTGCAATGATCTTATCACATTAACTGTTCAATCCCAAACATCATGTCATTCGTCGTGGTTGGTCTTTTCAGGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCAAGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCACATGAACTTTGTAGAGGTGGTTGGTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGGTATGTACTATAACCATTTCTTTCTGCTATCATCATTATGCCTTTGATAATATCTCACTGTTGCCTATGGATTCGATAGCTCAGCAAATGCCATTTGGTCTTGACATGATCTATCTTTTCTCTTACCCCTCACGAATGTTAGATTAAATGACTTGTTTGGTATTCAGTTTTAAAATTGAAACTCTCTCTCTTTTAAAACTAGTCCTTGAACTTTCAAAATTATCTTTGTCACGACATTAGTGGCTTACTCCTTTACACTTACTGCAACTTCTTTTATAGAGCGAGAATAAGGAGTAGTATGGAAGATTAGTCCTTTTCGCAATGCTCCCCCAACCGATAGTTTAGAGTTACGTTAGACATAAAATTTAAATTGATATCTTTTATTAGTTCAACCATTGTGGAAGTGGTATTAGATAAACATGAAGTTCTATCTCAAAACCAATTGGCTCACAAATTTAGAACCTATGAAATAAAAAATTGAAAGTTTAGAAACTTGTTAGACACTCTTAAAAGTTCATGTAGTAAATTTGCAATATACTTTGAAATTTACCCTTTTTTTTTCTCTCTCTCTCTCTTTCAGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGTTTATTTATTTAAGGATTTGTAGGTAGGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCTATTTGAAGCAACCGTGGTATTTGTTTTGTTCTCCATGTGAACGAAGTACATAATTTCATGGAACTTAGGGATTCACACTTTTTTCTTTTGCCTTGAAAGCACTGAATCACTAGTTTCTCTTTAAGGAATGATTTTTGTCGTAATCCAAAATCACTCTCAACAATATCTTTAATCGATCCAAATTTATTTAATCTATGTTTTACACTATGAAACACAATTTTCATACCAATAAAATAGTTTTTTATTTTATTTTATTTTATTAAGACATGTTTCAGCAGTTAA

mRNA sequence

ATGATGAACAAGAAACAAAACAATGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCAAGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCACATGAACTTTGTAGAGGTGGTTGGTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCTATTTGAAGCAACCGTGACATGTTTCAGCAGTTAA

Coding sequence (CDS)

ATGATGAACAAGAAACAAAACAATGATATGGATACGTCAAACCCTGCAGTTTTTGTTAATGGTGAGTTATTGAGCATGCATCGTGGAAGAAGGATTCGAGCAGTGGTTCAAGTTATCCAAAGTAATGGTGGAATCGTAACAGGAAAATCTACGGATGAACAACAATTGACTGTTCATGGCTTGCCTACAGTCCCTCACATGAACTTTGTAGAGGTGGTTGGTATTGCTGAGGACAACAAGAACATCAATGTTGAACATTGGACCGACTTTGGAACCACTTTTGATACTCAATCTTACAATCAGCTATGCCAACTTGCAAATGGGGAATTCAGAAGCCATGAGAAGAGGCAGAGGTATAATTTATTATGTGATTATGAGTCTTCTATGCTTGTAAGTTGTAACTCATGTGGCGTGTTAACTTGCTTAACTGCCGTTAATCTATTTGAAGCAACCGTGACATGTTTCAGCAGTTAA

Protein sequence

MMNKKQNNDMDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNFVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRSHEKRQRYNLLCDYESSMLVSCNSCGVLTCLTAVNLFEATVTCFSS
Homology
[Close]
BLAST of CaUC05G101470 vs. NCBI nr
Match: XP_008446755.1 (PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446756.1 PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >KAA0034652.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa] >TYK09203.1 replication protein A 14 kDa subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 199.1 bits (505), Expect = 2.8e-47
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. NCBI nr
Match: XP_004135037.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replication protein A 14 kDa subunit B [Cucumis sativus] >XP_031740923.1 replication protein A 14 kDa subunit B [Cucumis sativus] >KGN52188.1 hypothetical protein Csa_008262 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK I VE WTDFGTTFDT SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. NCBI nr
Match: XP_038893019.1 (replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 replication protein A 14 kDa subunit B-like [Benincasa hispida])

HSP 1 Score: 192.2 bits (487), Expect = 3.4e-45
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+ GLPTVP MNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIRGLPTVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK INVEHWTDFGTTFDTQSYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAEANKIINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. NCBI nr
Match: KAG6601223.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-44
Identity = 92/104 (88.46%), Postives = 96/104 (92.31%), Query Frame = 0 

Query: 9   DMDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMN 68
           DMDTSNPAVF NGELL+MH GR+IRAVVQVIQS+GG+VTGKSTDEQ LTVHGLPTVP MN
Sbjct: 228 DMDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMN 287

Query: 69  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           FVEVVGIAE NK INVEHWTDFG TFD QSYNQLCQLANGEFRS
Sbjct: 288 FVEVVGIAEGNKIINVEHWTDFGNTFDAQSYNQLCQLANGEFRS 331

[Close]
BLAST of CaUC05G101470 vs. NCBI nr
Match: XP_023539791.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.0 bits (476), Expect = 6.4e-44
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVF NGELL++H GR+IRAVVQVIQS+GG+VTGKSTDEQ LTVHGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNVHSGRKIRAVVQVIQSDGGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK INVEHWTDFGTTFD QSYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTTFDAQSYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.0e-28
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTS+PA FVNG LL  + G+++RAV+QVI+S+ G V GKSTD+QQ+ V G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           +EV+GIAE +  I  E WT+FG +FD Q+YN+LC+LANGEFR
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFR 102

[Close]
BLAST of CaUC05G101470 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.0e-25
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPHMN 69
           MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 70  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANGEF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFK 103

[Close]
BLAST of CaUC05G101470 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-24
Identity = 53/102 (51.96%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTS PA FVNGE+L M  GRR+R VVQ  +  GG++ G+STD  QLT+ G    P  ++
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           VE++GIAE N+ I  E  TDFG  FD   +N LC+LANG+ +
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMK 102

[Close]
BLAST of CaUC05G101470 vs. ExPASy TrEMBL
Match: A0A1S3BGM8 (replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489388 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. ExPASy TrEMBL
Match: A0A5A7SU42 (Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001960 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIA+ NK INVEHWTDFGTTFDT+SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAQSNKTINVEHWTDFGTTFDTESYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. ExPASy TrEMBL
Match: A0A0A0KRF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.4e-46
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVFVNGELLSMH GR+IRAVVQVIQS+GGIVTGKSTDEQQLT+HGLPTVPHMNF
Sbjct: 1   MDTSNPAVFVNGELLSMHCGRKIRAVVQVIQSDGGIVTGKSTDEQQLTIHGLPTVPHMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK I VE WTDFGTTFDT SYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAESNKTIKVEDWTDFGTTFDTASYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. ExPASy TrEMBL
Match: A0A6J1JC99 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111485454 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.4e-43
Identity = 90/103 (87.38%), Postives = 94/103 (91.26%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVF NGELL+MH GR+IRAVVQVIQS+ G+VTGKSTDEQ LTVHGLPTVP MNF
Sbjct: 1   MDTSNPAVFCNGELLNMHSGRKIRAVVQVIQSDDGVVTGKSTDEQHLTVHGLPTVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEVVGIAE NK INVEHWTDFGT FD QSYNQLCQLANGEFRS
Sbjct: 61  VEVVGIAEGNKIINVEHWTDFGTIFDAQSYNQLCQLANGEFRS 103

[Close]
BLAST of CaUC05G101470 vs. ExPASy TrEMBL
Match: A0A6J1D9X1 (replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LOC111018714 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.0e-39
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTSNPAVFVN ELL +H GR+IRAV QV +S+GG+VTGKSTDEQ+LTVHGLP VP MNF
Sbjct: 1   MDTSNPAVFVNAELLKLHIGRKIRAVFQVTKSDGGVVTGKSTDEQELTVHGLPKVPLMNF 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFRS 113
           VEV+GIAE NK INVEH TDFG TFD QSYNQLCQLANGEF+S
Sbjct: 61  VEVIGIAESNKIINVEHSTDFGNTFDAQSYNQLCQLANGEFKS 103

[Close]
BLAST of CaUC05G101470 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-29
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHGLPTVPHMNF 69
           MDTS+PA FVNG LL  + G+++RAV+QVI+S+ G V GKSTD+QQ+ V G P  P   +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 70  VEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           +EV+GIAE +  I  E WT+FG +FD Q+YN+LC+LANGEFR
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFR 102

[Close]
BLAST of CaUC05G101470 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-26
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPHMN 69
           MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 70  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANGEF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFK 103

[Close]
BLAST of CaUC05G101470 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-26
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = 0 

Query: 10  MDTSNPAVFVNGELLSMHRGRRIRAVVQVIQSNGGIVTGKSTDEQQLTVHG-LPTVPHMN 69
           MDTS+P+ FVNG LL    G+++R V+QV  S  G V GKSTD+ Q+ V G  P  P   
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 70  FVEVVGIAEDNKNINVEHWTDFGTTFDTQSYNQLCQLANGEFR 112
           ++EV+GIAE +  I  E WT+FG TFDTQ+YN+LC+LANGEF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFK 103

The following BLAST results are available for this feature:
BLAST of CaUC05G101470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446755.12.8e-4792.23PREDICTED: replication protein A 14 kDa subunit B-like [Cucumis melo] >XP_008446... [more]
XP_004135037.11.5e-4591.26replication protein A 14 kDa subunit B [Cucumis sativus] >XP_011655832.1 replica... [more]
XP_038893019.13.4e-4592.23replication protein A 14 kDa subunit B-like [Benincasa hispida] >XP_038893020.1 ... [more]
KAG6601223.11.7e-4488.46Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... [more]
XP_023539791.16.4e-4488.35replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
BLAST of CaUC05G101470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG73.0e-2857.84Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9LXK19.0e-2554.37Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
Q9SDK97.6e-2451.96Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of CaUC05G101470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BGM81.3e-4792.23replication protein A 14 kDa subunit B-like OS=Cucumis melo OX=3656 GN=LOC103489... [more]
A0A5A7SU421.3e-4792.23Replication protein A 14 kDa subunit B-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KRF27.4e-4691.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614640 PE=3 SV=1[more]
A0A6J1JC993.4e-4387.38replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1D9X13.0e-3980.58replication protein A 14 kDa subunit B-like OS=Momordica charantia OX=3673 GN=LO... [more]
BLAST of CaUC05G101470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18590.12.1e-2957.84Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.16.4e-2654.37Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.26.4e-2654.37Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 8..113
e-value: 8.3E-18
score: 66.2
NoneNo IPR availablePANTHERPTHR47058:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 10..112
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 10..112
NoneNo IPR availableCDDcd04479RPA3coord: 15..107
e-value: 3.19361E-23
score: 85.7777
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 10..108
e-value: 8.8E-19
score: 67.8
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 15..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G101470.1CaUC05G101470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding