CaUC05G095310 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G095310
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCiama_Chr05: 26099542 .. 26101064 (-)
RNA-Seq ExpressionCaUC05G095310
SyntenyCaUC05G095310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAAATATGGTCGACGCCTCGATCTACACTCAAACTGCTGACTCATCTAAGGAGTTGGCTACACTTGAAAGCAAAGGAGGAATAAGCAAAGTGCTCAACACCTACCAAGTCAAATCTAGGTTATCCCCAGTCGGAACCTCACCCTTCGTAAACTTACTAAACCAGGTGACTACCATCAAATTAGATCGAACTAACTTCCTTCTTTGGCAGAGTATTGTGATTCCCATACTAAAAAGCTATAAGCGTGAAGGACATATGTCTAGAAAAACCCCTACTCTTGAAATGTCGATCATTCTTCCTCCATCTAACGATGAACTTGAAGGACTATTAATGCCAAATCCAAAGTATGATATCTGGATAGCAGCTGACCAATTATTGGTAGGCAGGCTTTACAGCTCCATGACCTTGAGGTGGTTGTTCAAGTGATGGGGTATGATGAAGCAAAACCATTATGTGATGCAGTCCAAGAGTACTATGGAGTTCAATCAAGATCCCAAGAAGATTTCAATCGTCTAATGCTGCAACAGACAAGAAAGGGAATAATGAGAATGCACGAGTATCTTGACATTATGAAAAGGTATATCGACAACCTTGCTATTGTTGGTTCTCCCATGGATATGAGGAGTTTTGTCTCTCATGTTACAACCAGTTTGGATGAGGAATATAATGTTGTGGTATGTGTTATGAGAAGCAAAGATCTGACTTTGAGTCAAATTCAACTGGAATTGATTGCTTTTGAGCAACGTCATGAACAACTTGAAAAGTTCAAGAATGTTGTGTCTATGAATCAAGTGTCTACAAACCGTGCAAAGCGTGAGAATCCACCAACAAACAACCATCAAAGCATTCCTCATTCAAATTAGAATAATAGAGGCTTTTATCCTTCGAAAAGAGGAGGTCATGGCAAAGGAAGAAGTAACGGGTACTCTCTTTATCCCCTGACAATCGACTCATTTGTCAAGTGTGTGGCAAAATGAGACATACTGCTACGATTTATTTTCATAGATATGACAACCCAGAAAATACCACCTCAACCAATATGGGAAGAAACTCTATTCTACAAACCCGTTCTACAAATGAATCTCCCTCAGCTTTGATGGCTTTTCCTGAAACCCTACAAGATCCATCTTGGTATTTGGACAGGGAGCAAGCAACCATGTTACTAGTGAACTTGGAAATTTGTCTCTAAAAGGTAATCACTTATCTATAAAAAAATATAGTTGTTGCTTATGGTACTAAGGTACCAACTACCACTGTTGGATCTGGTTATATTGAAACTTTGAATGGGCAGTTATTTCTTAAAGATGTGTTAGTAGTTCCTCTATTACAAAAGAAACTTCTTAGCATCTCACAATTAGTTCATAATAATCCAGTGACAGTTGAGTTTGATAACCTTTTTTGCTATGTTAAGGAAAGGAAGCCCAAGGAAGTTTGTCTGGTAGGTTGTCGTGAGCATGGGCTGTATCGGTTGATGGGAGTAAATGAAGTCTCAATTTTTGTGAATAAAGAAGCTGAAGACAGA

mRNA sequence

AGCAAATATGGTCGACGCCTCGATCTACACTCAAACTGCTGACTCATCTAAGGAATATGACAACCCAGAAAATACCACCTCAACCAATATGGGAAGAAACTCTATTCTACAAACCCGTTCTACAAATGAATCTCCCTCAGCTTTGATGGCTTTTCCTGAAACCCTACAAGATCCATCTTGGTATTTGGACAGGGAGCAAGCAACCATGTTACTAGTACCAACTACCACTGTTGGATCTGGTTATATTGAAACTTTGAATGGGCAGTTATTTCTTAAAGATGTGTTAGTAGTTCCTCTATTACAAAAGAAACTTCTTAGCATCTCACAATTAGTTCATAATAATCCAGTGACAGTTGAGTTTGATAACCTTTTTTGCTATGTTAAGGAAAGGAAGCCCAAGGAAGTTTGTCTGGTAGGTTGTCGTGAGCATGGGCTGTATCGGTTGATGGGAGTAAATGAAGTCTCAATTTTTGTGAATAAAGAAGCTGAAGACAGA

Coding sequence (CDS)

ATGGTCGACGCCTCGATCTACACTCAAACTGCTGACTCATCTAAGGAATATGACAACCCAGAAAATACCACCTCAACCAATATGGGAAGAAACTCTATTCTACAAACCCGTTCTACAAATGAATCTCCCTCAGCTTTGATGGCTTTTCCTGAAACCCTACAAGATCCATCTTGGTATTTGGACAGGGAGCAAGCAACCATGTTACTAGTACCAACTACCACTGTTGGATCTGGTTATATTGAAACTTTGAATGGGCAGTTATTTCTTAAAGATGTGTTAGTAGTTCCTCTATTACAAAAGAAACTTCTTAGCATCTCACAATTAGTTCATAATAATCCAGTGACAGTTGAGTTTGATAACCTTTTTTGCTATGTTAAGGAAAGGAAGCCCAAGGAAGTTTGTCTGGTAGGTTGTCGTGAGCATGGGCTGTATCGGTTGATGGGAGTAAATGAAGTCTCAATTTTTGTGAATAAAGAAGCTGAAGACAGA

Protein sequence

MVDASIYTQTADSSKEYDNPENTTSTNMGRNSILQTRSTNESPSALMAFPETLQDPSWYLDREQATMLLVPTTTVGSGYIETLNGQLFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKERKPKEVCLVGCREHGLYRLMGVNEVSIFVNKEAEDR
Homology
BLAST of CaUC05G095310 vs. NCBI nr
Match: XP_031262132.1 (uncharacterized protein LOC116120313 [Pistacia vera])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 0

Query: 35  QTRSTNESPSAL---MAFPETLQDPSWYLDRE-------QATMLLVPTTTVGSGYIETLN 94
           +T+  N +P+++   MA P T+ D +WY+D +           L++     G G ++  N
Sbjct: 182 ETKHQNHAPTSVGTTMATPHTVTDQTWYVDSKATNHMISDLNNLVIQDNYQGGGAVQVGN 241

Query: 95  GQ-----------------LFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKE 147
           GQ                 L LK++L VP + K LLSISQ+  +N V +EF +  C VK+
Sbjct: 242 GQTIPVSVSLLHSQTSPRVLLLKNMLCVPHIAKNLLSISQITKDNGVIIEFHSDHCLVKD 301

BLAST of CaUC05G095310 vs. NCBI nr
Match: CAN74951.1 (hypothetical protein VITISV_030567, partial [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = 0

Query: 30  RNSILQTRSTNESPSALMAFPETLQDPSWYLDREQATMLLVPTTTV-------GSGYIET 89
           +NS  Q  STN SP A +  P+   + SW++D      +   + T+       G+G +  
Sbjct: 236 QNSHQQLDSTNTSPHAYIVAPDLNSNTSWFVDSGATHHMTTDSNTLDVFDHYSGTGNVVV 295

Query: 90  LNGQ--------------------LFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLF 147
            NGQ                    L L +VL VP + K L+S+++   +N V +EFD+  
Sbjct: 296 GNGQTLDISSVGHTSFPSRKSSKSLHLANVLHVPQITKNLISVAKFTQDNDVILEFDSHC 355

BLAST of CaUC05G095310 vs. NCBI nr
Match: KYP47922.1 (hypothetical protein KK1_030409 [Cajanus cajan])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 46/137 (33.58%), Postives = 64/137 (46.72%), Query Frame = 0

Query: 44  SALMAFPETLQDPSWYLD-------REQATMLLVPTTTVGSGYIETLNGQ---------- 103
           SALMA PETL DPSWYLD          A+ L+  T   G   ++  NG           
Sbjct: 2   SALMAVPETLYDPSWYLDTGATNHVTSDASNLMGKTPYKGEAKLKMANGDSSSIQYIGNS 61

Query: 104 ----------LFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKERKPKEVCLV 154
                     LFL  ++ VP + K LLS+SQ   +N V  EF    C +K ++ ++V + 
Sbjct: 62  YFYPSKSAKPLFLNQLMHVPSVSKNLLSVSQFARDNKVFFEFHPNTCNIKCQETRDVLMK 121

BLAST of CaUC05G095310 vs. NCBI nr
Match: RVX01179.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 6.5e-07
Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = 0

Query: 30  RNSILQTRSTNESPSALMAFPETLQDPSWYLDREQATMLLVPTTTV-------GSGYIET 89
           +NS  Q  ST+ SP A +  P+   + SW++D      +   + T+       G+G +  
Sbjct: 194 QNSHQQLDSTSTSPHAYIVAPDLDSNTSWFVDSGATHHMTTDSNTLNVSDHYSGTGNVVV 253

Query: 90  LNGQ--------------------LFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLF 147
            NGQ                    L L +VL VP + K L+S+++   +N V +EFD+  
Sbjct: 254 GNGQTLDISSVGHTSFPSRKSSKSLHLANVLHVPHITKNLISVAKFTQDNDVILEFDSHC 313

BLAST of CaUC05G095310 vs. NCBI nr
Match: XP_042756719.1 (uncharacterized protein LOC111915367 isoform X2 [Lactuca sativa])

HSP 1 Score: 65.1 bits (157), Expect = 6.5e-07
Identity = 47/135 (34.81%), Postives = 67/135 (49.63%), Query Frame = 0

Query: 52  TLQDPSWYLDREQATMLLVPTTT---------------VGSGYI--------ETLNGQLF 111
           T + P WY+D   AT  ++P+TT                G+G +         TL   L 
Sbjct: 204 TNRSPDWYVD-SGATSHMMPSTTHLDSSSPYTGHEQVIFGNGKVSPISHIGTSTLLSNLV 263

Query: 112 LKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKERKPKEVCLVGCREHGLYRLMG 164
           L DVLVVP L K LLSIS+L  ++PV V F N F  ++ RK KE+   G  ++GLY L  
Sbjct: 264 LSDVLVVPNLTKNLLSISKLTQDSPVDVLFSNPFFTIQNRKTKEILAKGRCDNGLYVLKH 323

BLAST of CaUC05G095310 vs. ExPASy TrEMBL
Match: A0A803PUR2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-09
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 0

Query: 34  LQTRSTNESPSALMAFPETLQDPSWYLDREQATMLLVPTTT--------------VGSGY 93
           L +  + ++ +   A PE  +D +WY+D   +  + V T+T              VG+G 
Sbjct: 60  LDSTKSTQNRTTFTATPEMGKDDAWYVDSGASNHVSVDTSTMTQKNKYTGKDDLIVGNGS 119

Query: 94  IETL------------NGQLFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKE 147
             T+            N  L LKD+L VP + K L+SIS+L  +N V VEF   +CYVK+
Sbjct: 120 QLTIDHIGNATFKSINNYPLILKDILHVPKITKNLISISKLTTDNDVIVEFTPDYCYVKD 179

BLAST of CaUC05G095310 vs. ExPASy TrEMBL
Match: A5BSC1 (Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_030567 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 44/144 (30.56%), Postives = 71/144 (49.31%), Query Frame = 0

Query: 30  RNSILQTRSTNESPSALMAFPETLQDPSWYLDREQATMLLVPTTTV-------GSGYIET 89
           +NS  Q  STN SP A +  P+   + SW++D      +   + T+       G+G +  
Sbjct: 236 QNSHQQLDSTNTSPHAYIVAPDLNSNTSWFVDSGATHHMTTDSNTLDVFDHYSGTGNVVV 295

Query: 90  LNGQ--------------------LFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLF 147
            NGQ                    L L +VL VP + K L+S+++   +N V +EFD+  
Sbjct: 296 GNGQTLDISSVGHTSFPSRKSSKSLHLANVLHVPQITKNLISVAKFTQDNDVILEFDSHC 355

BLAST of CaUC05G095310 vs. ExPASy TrEMBL
Match: A0A251RUI4 (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0568341 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 70  VPTTTVGSGYIETLNGQLFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKERK 129
           +P T VG+    +LN  + LK+VLVVP L K+LLSIS+L +++PV V F N F ++++RK
Sbjct: 343 LPVTNVGT---TSLNKHISLKNVLVVPHLTKRLLSISRLTNDSPVDVLFSNNFFHIQDRK 402

Query: 130 PKEVCLVGCREHGLYRLMGVNEVSI 155
            KE+   G  E+GLY L   N   +
Sbjct: 403 TKEILAKGTCENGLYVLREGNHAFV 424

BLAST of CaUC05G095310 vs. ExPASy TrEMBL
Match: A0A151RZF3 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_030409 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-08
Identity = 46/137 (33.58%), Postives = 64/137 (46.72%), Query Frame = 0

Query: 44  SALMAFPETLQDPSWYLD-------REQATMLLVPTTTVGSGYIETLNGQ---------- 103
           SALMA PETL DPSWYLD          A+ L+  T   G   ++  NG           
Sbjct: 2   SALMAVPETLYDPSWYLDTGATNHVTSDASNLMGKTPYKGEAKLKMANGDSSSIQYIGNS 61

Query: 104 ----------LFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKERKPKEVCLV 154
                     LFL  ++ VP + K LLS+SQ   +N V  EF    C +K ++ ++V + 
Sbjct: 62  YFYPSKSAKPLFLNQLMHVPSVSKNLLSVSQFARDNKVFFEFHPNTCNIKCQETRDVLMK 121

BLAST of CaUC05G095310 vs. ExPASy TrEMBL
Match: A0A803NUC9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.3e-08
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 0

Query: 38  STNESPSALMAFPETLQDPSWYLD----------------------REQATM---LLVPT 97
           S ++  SAL+A PE L D +WY D                      +EQ T+     +P 
Sbjct: 223 SQDKQFSALIATPEMLNDDNWYADSGASNHLTSDPGKIQAKTEYEGKEQITIGDGRKLPI 282

Query: 98  TTVGSGYIETLNGQ-LFLKDVLVVPLLQKKLLSISQLVHNNPVTVEFDNLFCYVKERKPK 147
           + VGSG I+T +   L LK++L +P + K L+S+SQL  +N V++EF + FC VK++   
Sbjct: 283 SHVGSGVIQTKSSNPLLLKNMLHIPSISKNLISVSQLTTDNNVSMEFFSDFCCVKDQSTG 342

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031262132.11.5e-0833.09uncharacterized protein LOC116120313 [Pistacia vera][more]
CAN74951.11.0e-0730.56hypothetical protein VITISV_030567, partial [Vitis vinifera][more]
KYP47922.11.3e-0733.58hypothetical protein KK1_030409 [Cajanus cajan][more]
RVX01179.16.5e-0729.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
XP_042756719.16.5e-0734.81uncharacterized protein LOC111915367 isoform X2 [Lactuca sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803PUR25.7e-0934.53Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A5BSC14.8e-0830.56Uncharacterized protein (Fragment) OS=Vitis vinifera OX=29760 GN=VITISV_030567 P... [more]
A0A251RUI44.8e-0844.71Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g05... [more]
A0A151RZF36.3e-0833.58Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_030409 PE=4 SV=1[more]
A0A803NUC98.3e-0834.81Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G095310.1CaUC05G095310.1mRNA