CaUC05G093410 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G093410
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	Ciama_Chr05: 19565272 .. 19567272 (-)
RNA-Seq Expression	CaUC05G093410
Synteny	CaUC05G093410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGTCTGTTTCTATAATTTCTTGTGCTTTCTTTTTTGGGACTTGGGACTTTGATTGATTGTGATTCTTCCCCCTTGGAACTGTTTGGAATTAATGTTCTGTTTGAATTTGATTGTTAGGAAGGAAATAGACGCCTTATCCACAATTGGCTTGGGAATTTTAAGAGTTTGTAGAGATTTATACAGGCTCACTCTTAGGGAAGTCTAGACATCAATCTGGGGCTTATCTTTTCACTCTTTCGAGCAACTTAGGTTATGGATCTCAAGTTAAAGAGAAGATAGAGTGAAAAAATCTTTGTGTGTTATGAGTTATGAAAACAGAAATTATGTGGCCTCAATGTGGCTGGTAGTTTTTCACCTGTTAGATGTTTGATAATGTCACGAGTGTATGGGCCAATTTATGCAAACCTTAACTAATCTATCGGGACAACTTGTCTAACCTAATGCTTGGGTGTCAAGGAAGCTAGTAGGATATTGATAGTAAGCTTTTTAGATGTATAAGAGAGAAGTATCTCAAATTTATATTATGTGGTTGTTGGGGGAGATGCAGATTTTTTAGTTTGCATTCAACAGTTATTGTGAGGTAGCCACATTGTGATAGTCTCATTAAATAATTTGTTGAAAGTAAAGCATATTTTTGAAAAAGTATATATTTTTATAGTCCAAATATAGTGTAGTGGGAAAGTTACCTGTTCTCATCTCAAACGTCTATAGTTTGTTTCTCCATCCTGCACCATTGTTGAACGCAGATATAAAAGTGCCATTTTTCCATTGTTCTTCTATGTGAAGTTTGAAATTTGTTTCAAAATAGCCCTCGTAGGTATTCGACATTAAAATTCAAAGTTAGAAAAGTTTGTTTGCATTTATGTGAACAAATCAAAATACATAGATCGAAAAGAATAATAATAAAGACAAAGACACATGACTTAATTATGAACCATATTTGGTTTCTCCTTTCAAATTTACCCTCTCAATTTATTATTCTTTTGTTTGTGTTAAGATTTGTTCATTCGAGAGCAACATATAAGTAGACACAAATTTTTTTGTCTATTAACTGAACGACACAAGCTTTCAAATGTTGTTCTGAAAAAAATAAATTTAATTTAAAAACTGATTACAGTGGAACTTGTAGAATTTATAGAAGACAGAATATAGCCACAGTTAAAAGAGTAATCTTTGTGTTTTGTAATTTTTCTTCCTTGTTCCCTTTCGTTTTCTCGTTTTAGTTATTATTGTTTCTTGAGAACTTCAGATCCTGCAGAACCTACTACTCAAATTGGAAGATGACTGTAGAGAATGACTTGCTAGAGATTTTAATAATTTTATTGCCCAATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAATGTTTTGTCAAAGGAAAATGGATGGGATTTATGTGCTAAGTTGTTTCATGAAACTAAGCTATGATTTGGTTGATGAACAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAAACATTCCTTATTAA

mRNA sequence

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAAACATTCCTTATTAA

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCTCCTTCTCCGGCAAATCAGGCCGCCGCCGCTCAGTTTCAAACACTCAAATCCAGGGATGGATCGGTTGCCCTAAAGCCCCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATCTGTCCGTCGCTGGCCTTCGCCAACACAATGTTCTTCAGATCGGCATATAATGTGCAGGTGATTGTGGATGATAATGAACCGGAGGAGCGGCTTCTGAACAGATTCCGGCGAGAGGTTATGAGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAACACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGGAGGCGCCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGAAAACATTCCTTATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEENIPY

Homology

[Close]

BLAST of CaUC05G093410 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 339.3 bits (869), Expect = 2.0e-89
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180

Query: 181 NIPY 185
           +IPY
Sbjct: 181 DIPY 183

[Close]

BLAST of CaUC05G093410 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 178/184 (96.74%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 108

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 109 HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 168

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 
Sbjct: 169 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEA 228

Query: 181 NIPY 185
           +IPY
Sbjct: 229 DIPY 231

[Close]

BLAST of CaUC05G093410 vs. NCBI nr
Match: XP_038900112.1 (30S ribosomal protein S21, chloroplastic [Benincasa hispida])

HSP 1 Score: 336.7 bits (862), Expect = 1.3e-88
Identity = 177/185 (95.68%), Postives = 180/185 (97.30%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQ-AAAAQFQTLKSRDGSVALKPQQGP 60
           MASLSSFFSFLLPSKPPPPKPHQP I SSPSPAN  AAAAQ QTLKS+DGSV+LKPQQGP
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIVSSPSPANHAAAAAQCQTLKSKDGSVSLKPQQGP 60

Query: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 120
           NHSEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQ
Sbjct: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVLVDDNEPEERLLNRFRREVMRAGVIQ 120

Query: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180
           ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE
Sbjct: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180

Query: 181 ENIPY 185
           ENIPY
Sbjct: 181 ENIPY 185

[Close]

BLAST of CaUC05G093410 vs. NCBI nr
Match: AAL35983.1 (ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Protein S21 [Spinacia oleracea])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 NIP 184
           +IP
Sbjct: 188 DIP 189

[Close]

BLAST of CaUC05G093410 vs. NCBI nr
Match: XP_004145671.1 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypothetical protein Csa_017561 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 NIP 184
           +IP
Sbjct: 181 DIP 182

[Close]

BLAST of CaUC05G093410 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 6.6e-35
Identity = 92/179 (51.40%), Postives = 116/179 (64.80%), Query Frame = 0


Query: 2   ASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNH 61
           +SL +F S L PS    P    P   +  S ++Q  +    + K  + ++A K       
Sbjct: 5   SSLLNFLSPLFPSNTSLPPSSNPKFPNPNSLSSQQNSISISSKKHENAAIAKK------- 64

Query: 62  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 121
            E    +L +V+CPSLAF+NT++FRSAYNVQV+VDDNE EERLLNRFRREVMRAGVIQEC
Sbjct: 65  -EEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQEC 124

Query: 122 KRRRFFENTQDVRKRKTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWDLPE 179
           KRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D DNWD+PE
Sbjct: 125 KRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWDMPE 175

[Close]

BLAST of CaUC05G093410 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 92  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 150
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of CaUC05G093410 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 93  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 149
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of CaUC05G093410 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.7e-90
Identity = 179/184 (97.28%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180

Query: 181 NIPY 185
           +IPY
Sbjct: 181 DIPY 183

[Close]

BLAST of CaUC05G093410 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.8e-89
Identity = 178/184 (96.74%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP N  AAAQFQTLKSRDGSVALKPQQGPN
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNH-AAAQFQTLKSRDGSVALKPQQGPN 108

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 109 HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 168

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 
Sbjct: 169 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEA 228

Query: 181 NIPY 185
           +IPY
Sbjct: 229 DIPY 231

[Close]

BLAST of CaUC05G093410 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.1e-88
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 67

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 68  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 127

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 128 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 187

Query: 181 NIP 184
           +IP
Sbjct: 188 DIP 189

[Close]

BLAST of CaUC05G093410 vs. ExPASy TrEMBL
Match: A0A0A0LDL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.1e-88
Identity = 174/183 (95.08%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSP+N  AA QFQTLKSRDGSVAL PQQGPN
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNH-AAPQFQTLKSRDGSVALNPQQGPN 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+E
Sbjct: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDE 180

Query: 181 NIP 184
           +IP
Sbjct: 181 DIP 182

[Close]

BLAST of CaUC05G093410 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.1e-80
Identity = 167/184 (90.76%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           MASLSSFFSFLLPSKPPPPKP QP IA SPSPANQ AAAQFQTLKSRDGSVAL PQQ P 
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQ-AAAQFQTLKSRDGSVALSPQQAPK 60

Query: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120
           HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE
Sbjct: 61  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 120

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEE 180
           CKRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLP EE
Sbjct: 121 CKRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLP-EE 180

Query: 181 NIPY 185
            IPY
Sbjct: 181 GIPY 181

[Close]

BLAST of CaUC05G093410 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 159.8 bits (403), Expect = 2.0e-39
Identity = 93/179 (51.96%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPNHS 62
           SL+SF SF+ P K    KP  P   + PSP           ++S      +  ++  + +
Sbjct: 6   SLTSFISFISPFK-SQTKPTPPPNLTLPSPTISQRRRNDLAIES------MAVEETSSTA 65

Query: 63  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 122
             LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQECK
Sbjct: 66  SSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECK 125

Query: 123 RRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT----KQEADDDNWDLP 178
           RRR+FEN QD +KR+TR+AAKRN++RRPQARFT + +++  A     K++ ++DNW++P
Sbjct: 126 RRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMP 177

[Close]

BLAST of CaUC05G093410 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-21
Identity = 75/195 (38.46%), Postives = 108/195 (55.38%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           + SLS   S LL SKPP P   +P    S   A  +      T                 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITLPSSVSARTSQHLSMTT----------------- 65

Query: 61  HSEPLSAELASVI----CPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRA 120
             + L+AE   VI     PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RA
Sbjct: 66  --KILTAEHDDVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRA 125

Query: 121 GVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDV-----PATKQEAD 180
           GV+QE +RRRFFE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  
Sbjct: 126 GVLQESRRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQ 181

Query: 181 DDNWDLPEEE-NIPY 185
           DD+W+LP E+  IPY
Sbjct: 186 DDHWELPPEDIEIPY 181

[Close]

BLAST of CaUC05G093410 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-15
Identity = 62/153 (40.52%), Postives = 84/153 (54.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPANQAAAAQFQTLKSRDGSVALKPQQGPN 60
           + SLS   S LL SKPP P   +P    S   A  +      T                 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITLPSSVSARTSQHLSMTT----------------- 65

Query: 61  HSEPLSAELASVI----CPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRA 120
             + L+AE   VI     PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RA
Sbjct: 66  --KILTAEHDDVINRVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRA 125

Query: 121 GVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 149
           GV+QE +RRRFFE++ + + RKT+EAAK+ R+R
Sbjct: 126 GVLQESRRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of CaUC05G093410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042889.1	2.0e-89	97.28	hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK0529...	[more]
XP_008450090.2	1.0e-88	96.74	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]
XP_038900112.1	1.3e-88	95.68	30S ribosomal protein S21, chloroplastic [Benincasa hispida]	[more]
AAL35983.1	1.9e-87	95.08	ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Pr...	[more]
XP_004145671.1	1.9e-87	95.08	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypotheti...	[more]

BLAST of CaUC05G093410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	6.6e-35	51.40	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
P48949	2.7e-04	46.55	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B8GPU0	4.6e-04	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]

BLAST of CaUC05G093410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C287	9.7e-90	97.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	4.8e-89	96.74	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
Q8VWX5	9.1e-88	95.08	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]
A0A0A0LDL7	9.1e-88	95.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1	[more]
A0A6J1J5C2	4.1e-80	90.76	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of CaUC05G093410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	2.0e-39	51.96	Ribosomal protein S21 family protein	[more]
AT5G63300.1	9.5e-21	38.46	Ribosomal protein S21 family protein	[more]
AT5G63300.2	1.2e-15	40.52	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 102..111 score: 43.33 coord: 94..102 score: 42.59 coord: 114..124 score: 38.64 coord: 126..136 score: 37.88
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 91..148 e-value: 3.6E-13 score: 47.1
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 92..146 e-value: 3.3E-19 score: 68.4
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 2..184
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 90..146 score: 13.870123
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 105..143 e-value: 2.3E-12 score: 48.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..184
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G093410.1	CaUC05G093410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome