CaUC05G089630 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC05G089630
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr05: 10202023 .. 10202755 (+)
RNA-Seq ExpressionCaUC05G089630
SyntenyCaUC05G089630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAGAAGATGCTCCAACCTCTGAAAGGTATTTGATATCATTTTTTTCTTTTACTGAAGAAAGAGGAGTTGTTTTTTCGGTTTTTAGTTATGAATTAGGAAATGGGTTTTGGTGGGTACATTGATTTGGGTTATTATTGTTTCTTCTTTGTAGATTGTGTTTATTGCTATTACTGTGCATTGCTCGCAACCCTTTTGTTTTCTGTTTCAAAAGGTAAGAAGTAAAAGACATAATCATCTTGTGAGAACTGAAAGTAACTTGCAGATGCAGCCTTTTGGAATAGGTCTCATTATGCCTTGAAAAGGAACAATATATGGTGTAGTTTTATGCTGGCAGACCACTGTGGAAAAGAATAGTATTATAGAGGACCTTTTTGTGCATAAAAGTTGCCCTTTCTCTCTTCAGTTTACATTTAGTTGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAACGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAAACAAGTGGGGTTGATTGCAGTCTGTCTTTTCCCTGAAAACCAGGGACAATTCTCTTTTATTCTTTTTCTTTTTTTTCTCTTTTTTATGACTTGTATTTTGTTTTAGTTTGGCTTCTACATGTTCTTCAGACTCAGGCACATGTAAAAGCAACTATACTTTTGGCATTTCATGTTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTATGA

mRNA sequence

ATGCACAAGAAGATGCTCCAACCTCTGAAAGATTGTGTTTATTGCTATTACTGTGCATTGCTCGCAACCCTTTTGTTTTCTGTTTCAAAAGGTAAGAATTTACATTTAGTTGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAACGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAAACAAGTGGGGTTGATTGCAACTCAGGCACATGTAAAAGCAACTATACTTTTGGCATTTCATGTTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTATGA

Coding sequence (CDS)

ATGCACAAGAAGATGCTCCAACCTCTGAAAGATTGTGTTTATTGCTATTACTGTGCATTGCTCGCAACCCTTTTGTTTTCTGTTTCAAAAGGTAAGAATTTACATTTAGTTGTCACTAATAGCCAGAAAACCTTGTGTTTGCTTTATCAACGAGGAGATGGGGTTGGGGGAGATGGAAAAGGGGAAAAACAAGTGGGGTTGATTGCAACTCAGGCACATGTAAAAGCAACTATACTTTTGGCATTTCATGTTTTGGTTGATAACCTTATAGCCTTGATCCATCTTGCATATTACAATTTTATGATTTTATGA

Protein sequence

MHKKMLQPLKDCVYCYYCALLATLLFSVSKGKNLHLVVTNSQKTLCLLYQRGDGVGGDGKGEKQVGLIATQAHVKATILLAFHVLVDNLIALIHLAYYNFMIL
Homology
[Close]
BLAST of CaUC05G089630 vs. NCBI nr
Match: KGN57663.1 (hypothetical protein Csa_011496 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 53/91 (58.24%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 13  VYCYYCALLATLLFSVSKGKNLHLVVTNSQKTLCLLYQRGDGVGGDGKGEKQVGLIATQA 72
           VYC +CALLATLLFS SK K                   GDGVGGDGKGE+Q     TQA
Sbjct: 125 VYCCHCALLATLLFSASKEK-----------------IGGDGVGGDGKGERQ-----TQA 184

Query: 73  HVKATILLAFHVLVDNLIALIHLAYYNFMIL 104
           HVKA ++L FH LVD LIA IHLAYYN  IL
Sbjct: 185 HVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

[Close]
BLAST of CaUC05G089630 vs. ExPASy TrEMBL
Match: A0A0A0L7A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.4e-13
Identity = 53/91 (58.24%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 13  VYCYYCALLATLLFSVSKGKNLHLVVTNSQKTLCLLYQRGDGVGGDGKGEKQVGLIATQA 72
           VYC +CALLATLLFS SK K                   GDGVGGDGKGE+Q     TQA
Sbjct: 125 VYCCHCALLATLLFSASKEK-----------------IGGDGVGGDGKGERQ-----TQA 184

Query: 73  HVKATILLAFHVLVDNLIALIHLAYYNFMIL 104
           HVKA ++L FH LVD LIA IHLAYYN  IL
Sbjct: 185 HVKAAMVLEFHGLVDKLIAFIHLAYYNSTIL 193

The following BLAST results are available for this feature:
BLAST of CaUC05G089630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57663.11.1e-1258.24hypothetical protein Csa_011496 [Cucumis sativus][more]
BLAST of CaUC05G089630 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC05G089630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7A55.4e-1358.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G239270 PE=4 SV=1[more]
BLAST of CaUC05G089630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC05G089630.1CaUC05G089630.1mRNA