CaUC05G086650 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G086650
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA-directed RNA polymerase subunit
Location	Ciama_Chr05: 6744907 .. 6747467 (+)
RNA-Seq Expression	CaUC05G086650
Synteny	CaUC05G086650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGCTACCAAAATTTGTTATGGGTTATGGAATTGGAAGCCCATTTACAAGTTCTGCAGTTTCTCCCGCCATTGGAAGAAAAACTCTTGTCTTTCGCCTGGTCGACGTTTCTAGAACCGCAGCCGATTTGGGATCGTCTTCTTCTTTACACTCTACTCCACTCTTCTAAATCTCTCCTTTTCTTTGATACACCCTTAGATTATCCGCTGATTCCTTCTGATTCTCACCTGCTAAAACCCTAGGAGAAATTTTGATTTATCTTTATTCAGCTCGGGGTTTTCTGTTTTTCTACCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGGTATGCATTGTCATAACCACACACTCGCCCACTTGTGCTCTCGTTCTTCTTTGTTGATTAGTTTGAGTTTTTGGAAAATGTTGTGATCATTGAAATTGTTATGTTGCAGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGTACCTTCTATTTCTTTTGTTTTCATCTTTCTATTTTAATACTGTGAACATTTCAGGTTTGTTAGTTAGCCTTTCATTTCTAAAGTATTATAGTTTCGACTTACGAGCACGGTACTCTCTGTTTGTAATTTTTCTGGTCTCTGGTGAAACTCTTTGTTATGGTTTTCTTCCTGTAGTTAAAATCATATATCAATTTGTTTTTTTTAATGTAAATTGTCTTGCTTTGTTGTATTTTTTTTTTACCTAGGATAAGGTTATTTGGACCTGATTCATGATTATGCCCTCGAATGCTTGAGGTTGCCCCTTTAGTTCGTCACCCTGTGTTAAAGTTTTACTTATGGCGTCATATTATCTCTGTTTTTTAGCTTACCCTTCTCTGAACTTGGATGGACCACTTTGTTCTTGGCTGCTTTTGTACACCATTTTCATATCAATAAACTTCAGAAGGGAAGATTTATGAACATTATGATTTAACTCGTTATCATCTGTTAATGAAATGCTAACGGGCCCTTACAGTCCTTAGTTGAAGATATGCATGTCCAACTGTGAATATAATTCGAGAAAAATGGTAGAAACAACCTCTTGTATCACTTAATCCAGCAGAGGGAATGTAACCTTTGTTGGGATAGTTAGTTCAGCCTTGTTTAATTCTGAAGGTTGCAAGTTTGATCTAATTTTTCATTGATATTAGAGTGTTATCCTGTTATCTCACTCCCGGAGATCATGAAATTATCCAAGTTAATTTTCACGAGTTGCTTTTGATTCCCCAGTTATTTTTATTTGTTTGTGTTCTTAAATTCTTTGGCATGTTACCTATATGGTGGGAGACTGGAGAGTTTTGAGCCTTGTTCTTTACCAATTGAATTGCGTATCTTTTATATTTTTATTCTGTGTATGTTTTCTTGATGGACCATTATTGAAAACCTCCTTTCTGCTTTTGTGTATCGAAACGGCTGGAATTTTCTTTCTACCTACTGGAAGATAGACCTGCTTGTGTATTCTGAGATTGATATTTTAGCCATTATTTTTTTTATTTGTCCCTAGAATTGCAACAAAATCACTCCGTTCATGGGGGTGGACAACCCATATTTTTCCGCTGCTCTCCTCCCCTCTAGATATTGATGGTTTCCTCCCCTCTTATTCTGCCGGTTAATATTTTTTTTATTTTTTTTTTCCTTTAATAAAAATTGTGTCTACAGGAAGTTGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTCCTTTTTCTTTTTTTCTTTTGGAAAGCCTTTCTTTGTTTGCAAGGCTTGTGCTTCTTTTTCCCATATTGTCTCGTTTATCATCGTTAGAGATTTTTAACACACTCTTTATTCTTTTCAACTCCTAAATTAGTTGCTTCTGTTTTACATTCTACACCATCATCATCTTAATACGGCCGTGAATACAGATGAGGTTTTCTTGAATGAGAAATCCGAATTGTTAGTTTGCTTGTGTAATTGTGTTGGATATTTTGTCAAGCTTGCTTGGAGGTTATAAATTTAAAATTACATCATTTCATCATAGTTACTTGTATTTAAGCCCTGATGTCATTGCGTTCTGCCTGCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACCGATGGAGAGATTAAATATCAAATACATGCCGAATATTTCCTTTGTGCAATCGAAGTTTTATTGGCACACTAATGTTTTAACCATCCTATGCTTGAAGACGTAATTTTTTGCATGGGGTTACAATTGTACTGATTGTCTATTTGGGTTGATGAGTACCATTAAACTGTCCAATTTCTCAATTTCTCAATTGCTTAATTTAACTTCACAGAGATGTACTGGAATAATGCTAACTTAAGTGATTTTAAAATACTTGTTTGTCATTTTT

mRNA sequence

TTTGGGCTACCAAAATTTGTTATGGGTTATGGAATTGGAAGCCCATTTACAAGTTCTGCAGTTTCTCCCGCCATTGGAAGAAAAACTCTTGTCTTTCGCCTGGTCGACGTTTCTAGAACCGCAGCCGATTTGGGATCGTCTTCTTCTTTACACTCTACTCCACTCTTCTAAATCTCTCCTTTTCTTTGATACACCCTTAGATTATCCGCTGATTCCTTCTGATTCTCACCTGCTAAAACCCTAGGAGAAATTTTGATTTATCTTTATTCAGCTCGGGGTTTTCTGTTTTTCTACCTTCTGCAAGATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGAAGTTGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTCCTTTTTCTTTTTTTCTTTTGGAAAGCCTTTCTTTGTTTGCAAGGCTTGTGCTTCTTTTTCCCATATTGTCTCGTTTATCATCGTTAGAGATTTTTAACACACTCTTTATTCTTTTCAACTCCTAAATTAGTTGCTTCTGTTTTACATTCTACACCATCATCATCTTAATACGGCCGTGAATACAGATGAGGTTTTCTTGAATGAGAAATCCGAATTGTTAGTTTGCTTGTGTAATTGTGTTGGATATTTTGTCAAGCTTGCTTGGAGGTTATAAATTTAAAATTACATCATTTCATCATAGTTACTTGTATTTAAGCCCTGATGTCATTGCGTTCTGCCTGCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTGTTCTTCGTTTGCTGCAATCCAAATTGTGGCCACCGATGGAGAGATTAAATATCAAATACATGCCGAATATTTCCTTTGTGCAATCGAAGTTTTATTGGCACACTAATGTTTTAACCATCCTATGCTTGAAGACGTAATTTTTTGCATGGGGTTACAATTGTACTGATTGTCTATTTGGGTTGATGAGTACCATTAAACTGTCCAATTTCTCAATTTCTCAATTGCTTAATTTAACTTCACAGAGATGTACTGGAATAATGCTAACTTAAGTGATTTTAAAATACTTGTTTGTCATTTTT

Coding sequence (CDS)

ATGAGTACCATGAAGTTTTGCCGGGAATGTAACAACATTCTCTATCCGAAGGAGGATAGAGATGAGAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCACCAGGAAGTTGCTGACAATAACTGCGTCTATAGGAATGAGATTCATCATGCTGTAGGGGAACGCACTCAAGTTTTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTCTTCCAGGTCCACTTCCTTTTTCTTTTTTTCTTTTGGAAAGCCTTTCTTTGTTTGCAAGGCTTGTGCTTCTTTTTCCCATATTGTCTCGTTTATCATCGTTAG

Protein sequence

MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQVHFLFLFFFWKAFLCLQGLCFFFPYCLVYHR

Homology

[Close]

BLAST of CaUC05G086650 vs. NCBI nr
Match: XP_008438942.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >XP_022137993.1 DNA-directed RNA polymerases II, IV and V subunit 9A isoform X2 [Momordica charantia] >XP_022939240.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita moschata] >XP_022972305.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_022972306.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita maxima] >XP_023539282.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_023539283.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita pepo subsp. pepo] >XP_031737720.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis sativus] >XP_038880081.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Benincasa hispida] >KAA0049537.1 DNA-directed RNA polymerase, M/15kDa subunit [Cucumis melo var. makuwa] >KAG7029011.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cucurbita argyrosperma subsp. argyrosperma] >TYK16215.1 DNA-directed RNA polymerase, M/15kDa subunit [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. NCBI nr
Match: XP_030503042.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >XP_030503043.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >KAF4356255.1 hypothetical protein F8388_000702 [Cannabis sativa] >KAF4357777.1 hypothetical protein G4B88_025012 [Cannabis sativa])

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-45
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. NCBI nr
Match: XP_024019992.1 (DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis])

HSP 1 Score: 189.1 bits (479), Expect = 2.2e-44
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTK+VRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKSVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. NCBI nr
Match: RYR12796.1 (hypothetical protein Ahy_B04g070148 isoform B [Arachis hypogaea])

HSP 1 Score: 189.1 bits (479), Expect = 2.2e-44
Identity = 84/90 (93.33%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDR++KILLYACRNCDHQEVADNNCVYRNE+HH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQVH 91
          DVAADPTLPRTKAVRC QCNHGEAVFFQV+
Sbjct: 61 DVAADPTLPRTKAVRCVQCNHGEAVFFQVN 90

[Close]

BLAST of CaUC05G086650 vs. NCBI nr
Match: PON61921.1 (DNA-directed RNA polymerase subunit/transcription factor [Parasponia andersonii] >PON93217.1 DNA-directed RNA polymerase subunit/transcription factor [Trema orientale])

HSP 1 Score: 188.3 bits (477), Expect = 3.7e-44
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRD KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDNKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTK+VRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKSVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. ExPASy Swiss-Prot
Match: Q8L5V0 (DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=3702 GN=NRPB9B PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-42
Identity = 74/88 (84.09%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRCA+C HGEAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCAKCQHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. ExPASy Swiss-Prot
Match: Q6NLH0 (DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=3702 GN=NRPB9A PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.0e-42
Identity = 74/88 (84.09%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRC++C H EAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCSKCQHREAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. ExPASy Swiss-Prot
Match: Q32P73 (DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-29
Identity = 54/87 (62.07%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQVH 91
            DPTLPRT+   C +C H EAVFFQ H
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSH 100

[Close]

BLAST of CaUC05G086650 vs. ExPASy Swiss-Prot
Match: P36954 (DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-29
Identity = 54/87 (62.07%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQVH 91
            DPTLPRT+   C +C H EAVFFQ H
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSH 100

[Close]

BLAST of CaUC05G086650 vs. ExPASy Swiss-Prot
Match: P60898 (DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-29
Identity = 54/87 (62.07%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 4   MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQDVA 63
           ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+
Sbjct: 14  IRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVS 73

Query: 64  ADPTLPRTKAVRCAQCNHGEAVFFQVH 91
            DPTLPRT+   C +C H EAVFFQ H
Sbjct: 74  QDPTLPRTEDHPCQKCGHKEAVFFQSH 100

[Close]

BLAST of CaUC05G086650 vs. ExPASy TrEMBL
Match: A0A6J1I879 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470884 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.5e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. ExPASy TrEMBL
Match: A0A5A7U5C7 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001440 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.5e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. ExPASy TrEMBL
Match: A0A0A0L816 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.5e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. ExPASy TrEMBL
Match: A0A6J1CBU6 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111009263 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.5e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. ExPASy TrEMBL
Match: A0A6J1FM50 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111445212 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.5e-46
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ
Sbjct: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVAADPTLPRTKAVRCAQCNHGEAVFFQ
Sbjct: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. TAIR 10
Match: AT4G16265.1 (RNA polymerases M/15 Kd subunit )

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-43
Identity = 74/88 (84.09%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE ADNNCVYRNE+HH+V E+TQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILS 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRCA+C HGEAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCAKCQHGEAVFFQ 88

[Close]

BLAST of CaUC05G086650 vs. TAIR 10
Match: AT3G16980.1 (RNA polymerases M/15 Kd subunit )

HSP 1 Score: 171.0 bits (432), Expect = 5.7e-43
Identity = 74/88 (84.09%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVADNNCVYRNEIHHAVGERTQVLQ 60
          MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVADN+CVYRNE+HH+V ERTQ+L 
Sbjct: 1  MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 61 DVAADPTLPRTKAVRCAQCNHGEAVFFQ 89
          DVA+DPTLPRTKAVRC++C H EAVFFQ
Sbjct: 61 DVASDPTLPRTKAVRCSKCQHREAVFFQ 88

The following BLAST results are available for this feature:

BLAST of CaUC05G086650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438942.1	2.0e-45	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo] >...	[more]
XP_030503042.1	4.4e-45	98.86	DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa] >XP_03050...	[more]
XP_024019992.1	2.2e-44	96.59	DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis]	[more]
RYR12796.1	2.2e-44	93.33	hypothetical protein Ahy_B04g070148 isoform B [Arachis hypogaea]	[more]
PON61921.1	3.7e-44	96.59	DNA-directed RNA polymerase subunit/transcription factor [Parasponia andersonii]...	[more]

BLAST of CaUC05G086650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L5V0	2.8e-42	84.09	DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana OX=...	[more]
Q6NLH0	8.0e-42	84.09	DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=...	[more]
Q32P73	2.0e-29	62.07	DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus OX=9913 GN=POLR2I PE=1...	[more]
P36954	2.0e-29	62.07	DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens OX=9606 GN=POLR2I PE...	[more]
P60898	2.0e-29	62.07	DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus OX=10090 GN=Polr2i P...	[more]

BLAST of CaUC05G086650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I879	9.5e-46	100.00	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470884 ...	[more]
A0A5A7U5C7	9.5e-46	100.00	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0L816	9.5e-46	100.00	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G166240 P...	[more]
A0A6J1CBU6	9.5e-46	100.00	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110092...	[more]
A0A6J1FM50	9.5e-46	100.00	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11144521...	[more]

BLAST of CaUC05G086650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16265.1	2.0e-43	84.09	RNA polymerases M/15 Kd subunit	[more]
AT3G16980.1	5.7e-43	84.09	RNA polymerases M/15 Kd subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	SMART	SM00661	rpol9cneu	coord: 5..58 e-value: 7.7E-16 score: 68.6
IPR001529	DNA-directed RNA polymerase, M/15kDa subunit	PFAM	PF02150	RNA_POL_M_15KD	coord: 4..36 e-value: 3.6E-11 score: 42.7
None	No IPR available	GENE3D	2.20.25.10		coord: 47..91 e-value: 9.5E-15 score: 56.2
None	No IPR available	GENE3D	2.20.25.10		coord: 1..46 e-value: 4.9E-26 score: 92.0
None	No IPR available	PANTHER	PTHR11239:SF17	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 1..89
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 52..90
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 1..48
IPR012164	DNA-directed RNA polymerase subunit/transcription factor S	PANTHER	PTHR11239	DNA-DIRECTED RNA POLYMERASE	coord: 1..89
IPR019761	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	PROSITE	PS01030	RNA_POL_M_15KD	coord: 6..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G086650.1	CaUC05G086650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001193	maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
biological_process	GO:0006379	mRNA cleavage
biological_process	GO:0006283	transcription-coupled nucleotide-excision repair
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding