CaUC05G083980 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G083980
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Mitochondrial group I intron splicing factor like
Location	Ciama_Chr05: 4388520 .. 4389060 (+)
RNA-Seq Expression	CaUC05G083980
Synteny	CaUC05G083980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTTATAACAAAATAAATTATAAAAAAATAATAATTTCCAAAGACCAATTCTGTTTTTCAATTACCATTAAAGCATCCCATCAATTGCTCAGTCTCACGCCTACTCAAAATGTCCCCCGCGCTCCCGTTCTGCTTTAATTTTCGAACATCTCATCTTCAATTATTCACAATTTACAATTCAACCGCCATGATTGCTGAGGTTTGAGTTCTGAAAATGGGGAACAGGGCAAGTTCCAATCTTCCCCAAATTCCATCGCCACCATTGGTATCCTTTCCTTCGAAATCGACAATGTAATTTCCCGACTCATTCATCTCCACCAACGAGAATTACCTTCTCCGGCTTGTTTCGGCCGAGAAAGTGGATGATTTGAACCAGGTGGCTGGCACTGAGCCCAGACGTGGGAAGAGATGCTCTGTTTCGGCCCTGCAGGGGTTCCACCATATACACACCGACATTGTTAGTGGGAATCTTGAGGCGAAGAAGCTTGGGATTTTGACCCAAGACATGGACGGAATTCCGAAGAAAATGGGTTAG

mRNA sequence

ATGTTGGATGATTTGAACCAGGTGGCTGGCACTGAGCCCAGACGTGGGAAGAGATGCTCTGTTTCGGCCCTGCAGGGGTTCCACCATATACACACCGACATTGTTAGTGGGAATCTTGAGGCGAAGAAGCTTGGGATTTTGACCCAAGACATGGACGGAATTCCGAAGAAAATGGGTTAG

Coding sequence (CDS)

ATGTTGGATGATTTGAACCAGGTGGCTGGCACTGAGCCCAGACGTGGGAAGAGATGCTCTGTTTCGGCCCTGCAGGGGTTCCACCATATACACACCGACATTGTTAGTGGGAATCTTGAGGCGAAGAAGCTTGGGATTTTGACCCAAGACATGGACGGAATTCCGAAGAAAATGGGTTAG

Protein sequence

MLDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKMG

Homology

[Close]

BLAST of CaUC05G083980 vs. NCBI nr
Match: PSR92891.1 (Protein of unknown function DUF668 protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 80.1 bits (196), Expect = 7.0e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDLN+VAG   R GK+CSV+ALQGF H++ DIV GN++ K LG L +DM+G+ KKM
Sbjct: 95  LDDLNRVAGVVSRLGKKCSVTALQGFEHVYGDIVGGNIDVKGLGFLVKDMEGMVKKM 151

[Close]

BLAST of CaUC05G083980 vs. NCBI nr
Match: GFZ14247.1 (hypothetical protein Acr_24g0004370 [Actinidia rufa])

HSP 1 Score: 80.1 bits (196), Expect = 7.0e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDLN+VAG   R GK+CSV+ALQGF H++ DIV GN++ K LG L +DM+G+ KKM
Sbjct: 95  LDDLNRVAGVVSRLGKKCSVTALQGFEHVYGDIVGGNIDVKGLGFLVKDMEGMVKKM 151

[Close]

BLAST of CaUC05G083980 vs. NCBI nr
Match: GER54806.1 (hypothetical protein STAS_32418 [Striga asiatica])

HSP 1 Score: 77.0 bits (188), Expect = 6.0e-11
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           L+DLN++A    R GK+CS+ ALQGF H++ DI+SGN++ K+LGIL +DM+G+ +KM
Sbjct: 102 LNDLNRIASVVSRLGKKCSIPALQGFEHVYGDIISGNIDVKELGILVKDMEGMVRKM 158

[Close]

BLAST of CaUC05G083980 vs. NCBI nr
Match: KAA8527742.1 (hypothetical protein F0562_035389 [Nyssa sinensis])

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDLN+VAG   R GK+C+V ALQGF H++ DIVSG ++ K LG L +DM+G+ +KM
Sbjct: 99  LDDLNRVAGVVSRLGKKCTVPALQGFEHVYGDIVSGAIDVKALGFLVRDMEGMVRKM 155

[Close]

BLAST of CaUC05G083980 vs. NCBI nr
Match: XP_028113292.1 (uncharacterized protein LOC114311349 [Camellia sinensis])

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           L+DLN+VAG   R GK+CSV ALQGF H++ DIV G ++ K+LG L +DMDG+ +KM
Sbjct: 103 LEDLNRVAGVVSRLGKKCSVPALQGFEHVYGDIVRGAIDVKELGFLVKDMDGMVRKM 159

[Close]

BLAST of CaUC05G083980 vs. ExPASy TrEMBL
Match: A0A7J0GTS7 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0004370 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDLN+VAG   R GK+CSV+ALQGF H++ DIV GN++ K LG L +DM+G+ KKM
Sbjct: 95  LDDLNRVAGVVSRLGKKCSVTALQGFEHVYGDIVGGNIDVKGLGFLVKDMEGMVKKM 151

[Close]

BLAST of CaUC05G083980 vs. ExPASy TrEMBL
Match: A0A2R6PKM2 (Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc27494 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDLN+VAG   R GK+CSV+ALQGF H++ DIV GN++ K LG L +DM+G+ KKM
Sbjct: 95  LDDLNRVAGVVSRLGKKCSVTALQGFEHVYGDIVGGNIDVKGLGFLVKDMEGMVKKM 151

[Close]

BLAST of CaUC05G083980 vs. ExPASy TrEMBL
Match: A0A5A7RC05 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_32418 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           L+DLN++A    R GK+CS+ ALQGF H++ DI+SGN++ K+LGIL +DM+G+ +KM
Sbjct: 102 LNDLNRIASVVSRLGKKCSIPALQGFEHVYGDIISGNIDVKELGILVKDMEGMVRKM 158

[Close]

BLAST of CaUC05G083980 vs. ExPASy TrEMBL
Match: A0A5B7AKR0 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026009 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDLN+VAG   R GKRC+V ALQGF H++ DIVSG ++ K LG L +DM+G+ +KM
Sbjct: 210 LDDLNRVAGVVSRLGKRCTVPALQGFEHVYGDIVSGAIDVKALGFLVRDMEGMVRKM 266

[Close]

BLAST of CaUC05G083980 vs. ExPASy TrEMBL
Match: A0A5J5AD06 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_035389 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-11
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDLN+VAG   R GK+C+V ALQGF H++ DIVSG ++ K LG L +DM+G+ +KM
Sbjct: 99  LDDLNRVAGVVSRLGKKCTVPALQGFEHVYGDIVSGAIDVKALGFLVRDMEGMVRKM 155

[Close]

BLAST of CaUC05G083980 vs. TAIR 10
Match: AT3G23160.1 (Protein of unknown function (DUF668) )

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-12
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 2   LDDLNQVAGTEPRRGKRCSVSALQGFHHIHTDIVSGNLEAKKLGILTQDMDGIPKKM 59
           LDDL++VA    R GK+C+  ALQGF H++ DIV+G ++ +KLG L +DM+ + KKM
Sbjct: 102 LDDLSRVASVVSRLGKKCNEPALQGFEHVYEDIVNGAIDFRKLGFLVKDMESMVKKM 158

The following BLAST results are available for this feature:

BLAST of CaUC05G083980 vs. NCBI nr


Match Name	E-value	Identity	Description
PSR92891.1	7.0e-12	61.40	Protein of unknown function DUF668 protein [Actinidia chinensis var. chinensis]	[more]
GFZ14247.1	7.0e-12	61.40	hypothetical protein Acr_24g0004370 [Actinidia rufa]	[more]
GER54806.1	6.0e-11	54.39	hypothetical protein STAS_32418 [Striga asiatica]	[more]
KAA8527742.1	1.3e-10	57.89	hypothetical protein F0562_035389 [Nyssa sinensis]	[more]
XP_028113292.1	1.3e-10	57.89	uncharacterized protein LOC114311349 [Camellia sinensis]	[more]

BLAST of CaUC05G083980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC05G083980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0GTS7	3.4e-12	61.40	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0004370 PE=4 SV=1	[more]
A0A2R6PKM2	3.4e-12	61.40	Uncharacterized protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY0...	[more]
A0A5A7RC05	2.9e-11	54.39	Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_32418 PE=4 SV=1	[more]
A0A5B7AKR0	2.9e-11	59.65	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026009...	[more]
A0A5J5AD06	6.4e-11	57.89	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_035389 PE=4 SV=1	[more]

BLAST of CaUC05G083980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23160.1	3.4e-12	50.88	Protein of unknown function (DUF668)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31371:SF2	PLANT/PROTEIN (DUF668)	coord: 2..58
None	No IPR available	PANTHER	PTHR31371	BNAC09G50660D PROTEIN	coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G083980.1	CaUC05G083980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045927	positive regulation of growth