CaUC05G083400 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G083400
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Acidic leucine-rich nuclear phosphoprotein 32-related protein 2
Location	Ciama_Chr05: 3917926 .. 3919174 (+)
RNA-Seq Expression	CaUC05G083400
Synteny	CaUC05G083400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGGGGCTGTTGGGTTCATAAATTTTGAACCCGTGAGCGTTGACCCAGTTGCGGAATCGGAGTTTTGAGTGGCTGAATTGTGAGAAATTTTCATTTTCCTTTTCTTGGGGTTTAGATGGAGTGGATTTCTGAGATGATTCGATTCAGAAATCCGAAATCTGGGTCCGATTTTTGGTGTAGTTGATAGGGGAAATTTCCGATTGGATTTGTAGTTAGTGAGAGTTTCGAACTATGGATGGTGATTCTAAGGTTGTTAATGGGCGTAAAGAGAAGACTATGGACTCTGCGGCTACCGGCGAAGTTGGGAATCACAGTAACGGTGAAGATGACAGTGAATCGAATGCCCTATTGCCGCCGCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGATAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGGTAGCTAAATTGTCTTTTTTCCCCTTTTTGGGTGCATTTTGATGGTTTTTTGGTATGTTTATCTGTGATTTGGGGAAGATGGATTCTCTGTTCTTATTCTGATTTTTACATTTTGGAGTTTGGCCATTAGAATCTAAATGGGACACTGGGTTGCTGTTGATATTTGAACTTTAGATGTTGAAGAAGCTGAAAGTTTCCATATTTGGAAACTGACACACTGGATTTGTAACTTGGTTTCAACTCTTTTCACTGTTTTCCTTTGGAAAGACTATCTGTAATGCTGCCTCATGACTAGAGTTGGTCCTCTTCTTTTGGTTTTTCTAGTTCATTGATGATATTTGATTGTTAGGACAACGCTAGTCCAAGCATAGCTTAGTTAAATAGGCACTAATTACTTCTCAAAAGTTGGTGATTCGATCCCATCTCTGTAATGGTTGAGCTTAAAAAGAAAATTAATCATTAGGACAATGGACTTCTCTTATCCTTGTAGCGGAGCTTGCATAAGTTTTCTTTACTATCTACTTGGCTTGTATTGAGGGACATGATGTTCGAATCTTTTGTACTTTCAGCTTCATTTTGGTGGTGCTTTAGACATGAGTGGTTGTTTTCTTAGCTTGTTTCTAAGTAGATGACATCTGTTTTGAACATGATGGATGTTGTTGCGGATCGAGTATTTCTTTGCTTTTAGATTTGTAATTTGTTCTCGTCTCTCTGTCGTCTGTTCTGCAGTGATGTGAGCGACTCTGGGGACGAGGAGGCTGACTCTTGCAGCTGTATAATTATGTAG

mRNA sequence

CATGGGGCTGTTGGGTTCATAAATTTTGAACCCGTGAGCGTTGACCCAGTTGCGGAATCGGAGTTTTGAGTGGCTGAATTGTGAGAAATTTTCATTTTCCTTTTCTTGGGGTTTAGATGGAGTGGATTTCTGAGATGATTCGATTCAGAAATCCGAAATCTGGGTCCGATTTTTGGTGTAGTTGATAGGGGAAATTTCCGATTGGATTTGTAGTTAGTGAGAGTTTCGAACTATGGATGGTGATTCTAAGGTTGTTAATGGGCGTAAAGAGAAGACTATGGACTCTGCGGCTACCGGCGAAGTTGGGAATCACAGTAACGGTGAAGATGACAGTGAATCGAATGCCCTATTGCCGCCGCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGATAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGTGATGTGAGCGACTCTGGGGACGAGGAGGCTGACTCTTGCAGCTGTATAATTATGTAG

Coding sequence (CDS)

ATGGATGGTGATTCTAAGGTTGTTAATGGGCGTAAAGAGAAGACTATGGACTCTGCGGCTACCGGCGAAGTTGGGAATCACAGTAACGGTGAAGATGACAGTGAATCGAATGCCCTATTGCCGCCGCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGATAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGTGATGTGAGCGACTCTGGGGACGAGGAGGCTGACTCTTGCAGCTGTATAATTATGTAG

Protein sequence

MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

Homology

[Close]

BLAST of CaUC05G083400 vs. NCBI nr
Match: XP_038897861.1 (uncharacterized protein LOC120085750 [Benincasa hispida])

HSP 1 Score: 171.4 bits (433), Expect = 3.7e-39
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
          MDGDSK VNG KEK MDSAATGEVG+HSNGE+ SESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKIMDSAATGEVGDHSNGEEYSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
          NDSNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEETDSCSCIIM 95

[Close]

BLAST of CaUC05G083400 vs. NCBI nr
Match: XP_004134046.1 (uncharacterized protein LOC101205158 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 3  GDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWND 62
          GDSK VNG KEKTMDSAA GEVG+HSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWND
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
          SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

[Close]

BLAST of CaUC05G083400 vs. NCBI nr
Match: KAG6582410.1 (hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-37
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1   MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
           M GDS+ VNG  E+++DSAA GEVG+H NGEDDSESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 58  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 117

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
           NDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Sbjct: 118 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 152

[Close]

BLAST of CaUC05G083400 vs. NCBI nr
Match: XP_022924268.1 (uncharacterized protein LOC111431793 [Cucurbita moschata] >XP_023526467.1 uncharacterized protein LOC111789958 [Cucurbita pepo subsp. pepo] >KAG7018809.1 hypothetical protein SDJN02_20682 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-37
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDS+ VNG  E+++DSAA GEVG+H NGEDDSESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 1  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
          NDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 95

[Close]

BLAST of CaUC05G083400 vs. NCBI nr
Match: XP_022979377.1 (uncharacterized protein LOC111479120 [Cucurbita maxima])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1   MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
           M GDS+ VNG  E+++DSAA GEVG+H N EDDSESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 20  MGGDSRAVNGYDERSVDSAAAGEVGDHRNSEDDSESNALLPPRRGGMSRKSNKPRMKVRW 79

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
           NDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Sbjct: 80  NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 114

[Close]

BLAST of CaUC05G083400 vs. ExPASy TrEMBL
Match: A0A0A0L701 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134730 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 3  GDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWND 62
          GDSK VNG KEKTMDSAA GEVG+HSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWND
Sbjct: 4  GDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRWND 63

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
          SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
Sbjct: 64 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96

[Close]

BLAST of CaUC05G083400 vs. ExPASy TrEMBL
Match: A0A6J1EBY1 (uncharacterized protein LOC111431793 OS=Cucurbita moschata OX=3662 GN=LOC111431793 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
          M GDS+ VNG  E+++DSAA GEVG+H NGEDDSESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 1  MGGDSRAVNGYDERSVDSAAAGEVGDHRNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
          NDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 95

[Close]

BLAST of CaUC05G083400 vs. ExPASy TrEMBL
Match: A0A6J1INK9 (uncharacterized protein LOC111479120 OS=Cucurbita maxima OX=3661 GN=LOC111479120 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.4e-37
Identity = 81/95 (85.26%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1   MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
           M GDS+ VNG  E+++DSAA GEVG+H N EDDSESNALLPPRRGGMSRKSNKPRMKVRW
Sbjct: 20  MGGDSRAVNGYDERSVDSAAAGEVGDHRNSEDDSESNALLPPRRGGMSRKSNKPRMKVRW 79

Query: 61  NDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
           NDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Sbjct: 80  NDSNGNNLAEILEFQPSDVSDSGDEESDSCSCMIM 114

[Close]

BLAST of CaUC05G083400 vs. ExPASy TrEMBL
Match: A0A5A7U1V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001950 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
          MDGDSK VNG KEKTMDSAA GEVG+HSNGE+ SESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 92
          NDSNGNNLAEILEFQPSDVSDSGDEEADSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 91

[Close]

BLAST of CaUC05G083400 vs. ExPASy TrEMBL
Match: A0A1S3AX40 (uncharacterized protein LOC103483558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483558 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 1  MDGDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRW 60
          MDGDSK VNG KEKTMDSAA GEVG+HSNGE+ SESNALLPPRRGGMSRK NKPRMKVRW
Sbjct: 1  MDGDSKDVNGCKEKTMDSAAAGEVGDHSNGEEYSESNALLPPRRGGMSRKLNKPRMKVRW 60

Query: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 92
          NDSNGNNLAEILEFQPSDVSDSGDEEADSCS
Sbjct: 61 NDSNGNNLAEILEFQPSDVSDSGDEEADSCS 91

[Close]

BLAST of CaUC05G083400 vs. TAIR 10
Match: AT2G33390.1 (unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-18
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 3  GDSKVVNGRKEKTMDSAATGEVGNHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWND 62
          G+ K  NG + K + S  + E+ +    E++SES  LLPPR+GGMSR ++K +  V+WND
Sbjct: 6  GEGKEANGCENKAIVSLNSSEIEDQIFEEEESESQCLLPPRKGGMSRSTDKIKRTVQWND 65

Query: 63 SNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
            G+NLAE+L ++PS+VSD+ D+++DSC C IM
Sbjct: 66 IKGDNLAEVLVYEPSEVSDTEDDDSDSCICTIM 98

[Close]

BLAST of CaUC05G083400 vs. TAIR 10
Match: AT1G34010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.4e-04
Identity = 21/45 (46.67%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 55  RMKVRWNDSNGNNLAEILEFQPSDVSDSGDE----EADSCSCIIM 96
           R KV+W D+ G  +AE+ EF+PS+V +S DE       SC C IM
Sbjct: 138 RRKVQWPDTCGIEIAEVREFEPSEVDESEDEFHHGSGKSCMCTIM 182

[Close]

BLAST of CaUC05G083400 vs. TAIR 10
Match: AT1G55475.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.4e-04
Identity = 19/43 (44.19%), Postives = 26/43 (60.47%), Query Frame = 0


Query: 53  KPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM 96
           + + KV+W D  G  LAEI EF+PSD  D   +   +C CII+
Sbjct: 78  REKKKVQWVDVIGKELAEIREFEPSDEDDIDSDRGKTCVCIIL 120

The following BLAST results are available for this feature:

BLAST of CaUC05G083400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897861.1	3.7e-39	92.63	uncharacterized protein LOC120085750 [Benincasa hispida]	[more]
XP_004134046.1	7.1e-38	92.47	uncharacterized protein LOC101205158 [Cucumis sativus]	[more]
KAG6582410.1	2.7e-37	86.32	hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022924268.1	2.7e-37	86.32	uncharacterized protein LOC111431793 [Cucurbita moschata] >XP_023526467.1 unchar...	[more]
XP_022979377.1	1.3e-36	85.26	uncharacterized protein LOC111479120 [Cucurbita maxima]	[more]

BLAST of CaUC05G083400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC05G083400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L701	3.4e-38	92.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134730 PE=4 SV=1	[more]
A0A6J1EBY1	1.3e-37	86.32	uncharacterized protein LOC111431793 OS=Cucurbita moschata OX=3662 GN=LOC1114317...	[more]
A0A6J1INK9	6.4e-37	85.26	uncharacterized protein LOC111479120 OS=Cucurbita maxima OX=3661 GN=LOC111479120...	[more]
A0A5A7U1V8	1.1e-36	92.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX40	1.1e-36	92.31	uncharacterized protein LOC103483558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CaUC05G083400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33390.1	3.0e-18	47.31	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bac...	[more]
AT1G34010.1	5.4e-04	46.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G55475.1	5.4e-04	44.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..73
None	No IPR available	PANTHER	PTHR33401:SF2	OS03G0138400 PROTEIN	coord: 6..95
None	No IPR available	PANTHER	PTHR33401	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC	coord: 6..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G083400.1	CaUC05G083400.1	mRNA