CaUC05G080170 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G080170
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Exosome complex component RRP41-like
Location	Ciama_Chr05: 1178837 .. 1180709 (-)
RNA-Seq Expression	CaUC05G080170
Synteny	CaUC05G080170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATTGGTAACCCTTTATCTGAAATTGTGATCTCTTTCAGGTGCACTGTGAGTAGAGCACTACACCATGGTGGATTTCAGTATGGAGATCGCATGAGAAAACCTAATTTCAATCTGTTTTTCGGTGTGTGTTTGTACTGTGTGCTGCCACTCGGTCTATTTGAGTGCTAATTGTAATTCTGTTGAAGTTCTGATTCCATCATTGCGATTGTAGTTAATTCCACTAAATAGGAGTTTGAGTGAAGGTCGGGAGTGAGTTACTCGGGTACAATCTAAAACAATCCTGCATTCTTGAAAGAACCAAACAATGGGCATTGAAGTAATGATATAATTAAATTTATCACAACCCATCCCAACAATGGGAAACCTTCATGCCCTTTTTCTTTGGTAGTTCAATGGGTGGTCGCCCCCCTCTAACAAGATTAGGCATATATAAGGAAACTTCTCTGCTATTTGGATAAGAGAATTTATGGAGGAGATCAAATTTAAATTTCCAGAAACCACATGACATATAGACCTGCTGCCACCTATTCGTTGATGCATTGATGCTTCTTATGAACCATGAAATATGGAAATTTTGAACCATGAAAGGTAGCATTTATAATATTCTCTCTTCAGAATATGGTTAAGGTAGATGTAGAACTAGTATCGTGTAGGTGTAGTAATTCCTTGTTTACTAAAATGGCTATATGATAAAAACCAACGTAAAAAAGAAAAAAAAAACTACGTTAAGACCTGCATTTATATCTATTTTGAATCAAGTTTATGGCATTTGTTACATTCAGACGATCAATAGAGATATCTTTAGTTCTTCGCCTGACAATTGAGGAATGCATGTTGACACATTTAATGCCTTAGTCTCTGGTTTTCTTCAATCATATTTAGAGATGCTCCGCTGTGATTTCGACCTATATCTTTCCTTATTCTTAGTTTTTATGTGAAGATATATATTTTTGTCCAAAGTGTATGATTAAATCCATCAGACATAGCTCTTAATATACTAGTTTTAGTACAAATACTTTAGGTCGATATTCTCTTTTCTTGCCTTTTTCCTGCACCTTTGTCATCTTCTTCACATATATCTCTTTTGTTTTTGTTTTCTTTTACAAAACAGAATATGGAAGTTTTTCTTGATCTCTTCCTGCTATCTTCTTCTATTTGCCTCATCTGTGCCAATAATTTCAAGACGTGCAATTATTGTTCACTGCACAATTGCTTAGAAGCTATGGTGTCTCCTCTTCTCTTTTAACAATTTAACATTAACTGGTCTAACCCTCTCTCCATGGCTCACGCTATTGCAGAACTCCTTTTAGGTCGCACACTCTTCAAACACAAGGCCAATGATATTAATGGGAAACTTGGCTTGAAATTAGCTACATAACATTCAAAGACTCAGTAGTGACCTAATTTTCCAACTCCATTATTTTTGTAATGTAACTATGATCTTTTTGTTTTATGAATGCTTATAGGAAACTTTGCCTAATTGGCTGAGTTTCCCCCATCTTGGTTTCTCTACTCGTTGTCAATGTGTAATGTTTTGTCTTGAGTGGTAGTGACTTGAAGAGTCTGGACTGCTTGGTTCATAAGCATGAAACATATAGATGTAGACTTATAGTGCACTTAGTTTTCAAGCTTGTTATGAAGAACTTAGATTCATACATATTTCCAAGTTTTCTTGCCTGCAGGTACTACTAGATCGGCATGCATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTTCCATGTTAAAACATGTGAGGAAACCTTTAGGTGA

mRNA sequence

ATGTTTATTGGTAACCCTTTATCTGAAATTGTGATCTCTTTCAGGTGCACTGTGAGTAGAGCACTACACCATGGTGGATTTCAGTATGGAGATCGCATGAGAAAACCTAATTTCAATCTGTTTTTCGGTACTACTAGATCGGCATGCATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTTCCATGTTAAAACATGTGAGGAAACCTTTAGGTGA

Coding sequence (CDS)

ATGTTTATTGGTAACCCTTTATCTGAAATTGTGATCTCTTTCAGGTGCACTGTGAGTAGAGCACTACACCATGGTGGATTTCAGTATGGAGATCGCATGAGAAAACCTAATTTCAATCTGTTTTTCGGTACTACTAGATCGGCATGCATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTATCTCAATGACGCTTCTCTGGTCGGTAATTTATTCCTCCGCACCCTCATTCAGTTCCATGTTAAAACATGTGAGGAAACCTTTAGGTGA

Protein sequence

MFIGNPLSEIVISFRCTVSRALHHGGFQYGDRMRKPNFNLFFGTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLRTLIQFHVKTCEETFR

Homology

[Close]

BLAST of CaUC05G080170 vs. NCBI nr
Match: XP_038902919.1 (exosome complex component RRP41 homolog isoform X3 [Benincasa hispida] >XP_038902928.1 exosome complex component RRP41 homolog isoform X3 [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 4.8e-08
Identity = 46/97 (47.42%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 1  MFIGNPLSEIVISFRCTVSRALHHGGFQYGDRMRKPNFNLFFGTTRSACINAATVALATA 60
          M IGNPLS IVISFRC  +                          RSAC NAAT+AL  A
Sbjct: 20 MCIGNPLSGIVISFRCAAA-------------------------DRSACTNAATLALTIA 79

Query: 61 GISMSDNVTSCTAGYLNDASLVGNLFLRTLIQFHVKT 98
          GI  SDNVTS +AGYLN ASL+G  +L+     HV T
Sbjct: 80 GIPRSDNVTSYSAGYLNGASLLGT-YLKDSAGGHVVT 90

[Close]

BLAST of CaUC05G080170 vs. NCBI nr
Match: XP_038902887.1 (exosome complex component RRP41 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 42/85 (49.41%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 1  MFIGNPLSEIVISFRCTVSRALHHGGFQYGDRMRKPNFNLFFGTTRSACINAATVALATA 60
          M IGNPLS IVISFRC  +                          RSAC NAAT+AL  A
Sbjct: 20 MCIGNPLSGIVISFRCAAA-------------------------DRSACTNAATLALTIA 79

Query: 61 GISMSDNVTSCTAGYLNDASLVGNL 86
          GI  SDNVTS +AGYLN ASL+ N+
Sbjct: 80 GIPRSDNVTSYSAGYLNGASLLENV 79

[Close]

BLAST of CaUC05G080170 vs. NCBI nr
Match: XP_038902879.1 (exosome complex component RRP41 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-07
Identity = 41/82 (50.00%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 1  MFIGNPLSEIVISFRCTVSRALHHGGFQYGDRMRKPNFNLFFGTTRSACINAATVALATA 60
          M IGNPLS IVISFRC  +                          RSAC NAAT+AL  A
Sbjct: 20 MCIGNPLSGIVISFRCAAA-------------------------DRSACTNAATLALTIA 76

Query: 61 GISMSDNVTSCTAGYLNDASLV 83
          GI  SDNVTS +AGYLN ASL+
Sbjct: 80 GIPRSDNVTSYSAGYLNGASLL 76

[Close]

BLAST of CaUC05G080170 vs. NCBI nr
Match: GFP91947.1 (exosome complex component rrp41 [Phtheirospermum japonicum])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 43/89 (48.31%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 15  RCTVSRALHHGGFQYGDRMRKPN---------FNLFF------------GTTRSACINAA 74
           RC  S A     F  GDRMRKP          F +F             G TRSACINAA
Sbjct: 69  RCEYSMA----NFSTGDRMRKPKGDSSKILFCFFVFLKIDIFVQVLQADGGTRSACINAA 128

Query: 75  TVALATAGISMSDNVTSCTAGYLNDASLV 83
           T+ALA AGI M D VTSC AGYLN   L+
Sbjct: 129 TLALADAGIPMRDLVTSCGAGYLNGTPLL 153

[Close]

BLAST of CaUC05G080170 vs. NCBI nr
Match: RXH80412.1 (hypothetical protein DVH24_041559 [Malus domestica])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 40/105 (38.10%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 7   LSEIVISFRCTVSRALHHGGFQYGDRMRKP-----------------------NFNLFF- 66
           +++++ + RC  + A     F  GDRMRKP                         ++F  
Sbjct: 59  ITKVIAAVRCEYTMA----NFSTGDRMRKPKEISLVIRQTMEACIMTHLMPRTQIDIFVQ 118

Query: 67  -----GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLV 83
                G TRSACINAAT+AL+ AGI M D VTSC+AGYLN   L+
Sbjct: 119 VLQADGGTRSACINAATLALSDAGIPMRDLVTSCSAGYLNSTPLL 159

[Close]

BLAST of CaUC05G080170 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.7e-06
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 43  GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLV 83
           G TRSACINAAT+ALA AGI M D   SC+AGYLN   L+
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLL 167

[Close]

BLAST of CaUC05G080170 vs. ExPASy TrEMBL
Match: A0A498IE61 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041559 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.4e-06
Identity = 40/105 (38.10%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 7   LSEIVISFRCTVSRALHHGGFQYGDRMRKP-----------------------NFNLFF- 66
           +++++ + RC  + A     F  GDRMRKP                         ++F  
Sbjct: 59  ITKVIAAVRCEYTMA----NFSTGDRMRKPKEISLVIRQTMEACIMTHLMPRTQIDIFVQ 118

Query: 67  -----GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLV 83
                G TRSACINAAT+AL+ AGI M D VTSC+AGYLN   L+
Sbjct: 119 VLQADGGTRSACINAATLALSDAGIPMRDLVTSCSAGYLNSTPLL 159

[Close]

BLAST of CaUC05G080170 vs. ExPASy TrEMBL
Match: A0A151S959 (Exosome complex exonuclease RRP41 OS=Cajanus cajan OX=3821 GN=KK1_026769 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 43  GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLVGNL 86
           G TRSACINAAT+ALA AGI M D VTSC+AGYLN   L+ NL
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDNL 170

[Close]

BLAST of CaUC05G080170 vs. ExPASy TrEMBL
Match: A0A5K1DNT7 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS19758 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 45 TRSACINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFL 88
          TRSACINAAT+ALA AGI M D VTSC+AGYLN   L+GN  L
Sbjct: 1  TRSACINAATLALADAGIPMCDLVTSCSAGYLNSTPLLGNHIL 43

[Close]

BLAST of CaUC05G080170 vs. ExPASy TrEMBL
Match: A0A7N0RED4 (RNase_PH domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 43  GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLVGNLFLRTLIQF 94
           G TRSACINAAT+ALA AGI MSD VTSC+AGYLN   L+  +   +L+ F
Sbjct: 128 GGTRSACINAATLALADAGIPMSDLVTSCSAGYLNSTPLLVLVVPMSLLAF 178

[Close]

BLAST of CaUC05G080170 vs. ExPASy TrEMBL
Match: A0A392QMH4 (Exosome complex component RRP41-like (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 43 GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLVG 84
          G TRSACINAAT+ALA AGI M D VTSC+AGYLN   L+G
Sbjct: 38 GGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLG 78

[Close]

BLAST of CaUC05G080170 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 43  GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLV 83
           G TRSACINAAT+ALA AGI M D   SC+AGYLN   L+
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLL 167

[Close]

BLAST of CaUC05G080170 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 43  GTTRSACINAATVALATAGISMSDNVTSCTAGYLNDASLV 83
           G TRSACINAAT+ALA AGI M D   SC+AGYLN   L+
Sbjct: 128 GGTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLL 167

The following BLAST results are available for this feature:

BLAST of CaUC05G080170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902919.1	4.8e-08	47.42	exosome complex component RRP41 homolog isoform X3 [Benincasa hispida] >XP_03890...	[more]
XP_038902887.1	1.4e-07	49.41	exosome complex component RRP41 homolog isoform X2 [Benincasa hispida]	[more]
XP_038902879.1	7.0e-07	50.00	exosome complex component RRP41 homolog isoform X1 [Benincasa hispida]	[more]
GFP91947.1	1.0e-05	48.31	exosome complex component rrp41 [Phtheirospermum japonicum]	[more]
RXH80412.1	1.3e-05	38.10	hypothetical protein DVH24_041559 [Malus domestica]	[more]

BLAST of CaUC05G080170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SP08	4.7e-06	67.50	Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41...	[more]

BLAST of CaUC05G080170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498IE61	6.4e-06	38.10	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041559 PE=4 SV=1	[more]
A0A151S959	1.1e-05	72.09	Exosome complex exonuclease RRP41 OS=Cajanus cajan OX=3821 GN=KK1_026769 PE=4 SV...	[more]
A0A5K1DNT7	1.1e-05	72.09	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS19...	[more]
A0A7N0RED4	2.4e-05	62.75	RNase_PH domain-containing protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A392QMH4	2.4e-05	73.17	Exosome complex component RRP41-like (Fragment) OS=Trifolium medium OX=97028 PE=...	[more]

BLAST of CaUC05G080170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61620.1	3.3e-07	67.50	3'-5'-exoribonuclease family protein	[more]
AT3G61620.2	3.3e-07	67.50	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 8..101 e-value: 2.0E-10 score: 42.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G080170.1	CaUC05G080170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004527	exonuclease activity