
CaUC04G078050 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTACGTAAACTAACTAATTAAACTCTCACTTCTTTTCCTTTATTAAAGATGCTGTTTCGATATTGTGTTTTATATATTCGTTAACTTTAGAAGTATAAAAACATGGTTTTCAACGTTTAAAATTAAAAGTTTCAACTCTATTTGATAATGATACTGTTTGGTTTTTTCTATCATGCTTGTATTATCTCACATTTTCTATTATGTTTTCATCTCTATGACTTGAATTTTCTAAATATCTCCTAGAATGTAGATAACAAAAAGAAAAATCTATAATTGAAAGTAGGGTTGGTTAATTTCCAAGACAAAATAATCATTGAATATAAGTTAATGAAATTTTTATTGAATGTTTTTAAAATGCAAAATTTTATTAAACACAATTTTGAATATTAATTCATGTTTTATCTTTTTTTTTTTATCTCTCTTAAACTTTCTATCTTATCACGATATTACATTTTTTTATCGACATATCAATATTTTTATTGATATTTTTCACATTTTTTTAGAGTAGACATCAACATAAGAAGCAAATCGTGATTTTTGTCATATCGTAAAAAATTCATGAACATGGAAAAATAAGTAATAAAATGTCACTAATGTAAATATGATATAAGTGACAAACAATTTAACACTTATTTAAATAGGCGGTGTATAATATTTATTTTTTTTTAAAAAAATGGTGTAAAATAATTATTTACTATTATACATTTTTTGAACTTTTTATTTTAATTATAATTTTAGTTAATTATGACATTTTCGTAAAATTTGAGACCTCAATTATTTTGATTGTGGAGATGGGTATTTTAAAGGTGGATGTTGATTGTGATTTTAATGGAATATTTGTGCAGGTGGGGCTTGTGGTTATGGGAATGTATATAGCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGTACGCCCTTTGTTAAGAATATGAATGAAAGATCGCTTACAATCATTCTAACCTTTAAAAAAAAAAGTCTTAGAATTATCGAATACAAAATTAATAGTTTAATCAGATTGGTTTGATCATCCTTTGATTTTTTAAAATTAAAATATTGAATTTTTTAACTTGTTATCTACTCAATAGAGGTGTTTTAAGAAACCAAATCAAAATTTGAAAACTAAAAAAATTAGTTTTTAAAAACTTGTTTTTGTTTTTGAATTTGCTTAATAATTCAACTACTTATTTAGTAAACATGAAACCACGGTAAAGAAGTCATAAAAAAACAAAATCATTTTCAGAAACTAAATGATTACTAAATTGAGTCTTAGTTACAATAAACTAAATGGTTACCAAACCGACTTTTGGTTTTTTTATTTTTTTGAAAATTAAGTTCATAAATTCTACTTCCATCGTTTCCATTTGTCATCTGACATTCTAACTTGTACAATTGTTTTAAAGAATCAAGCCAATTTATAAGAAAACTAAAAACAAAAAGCTGTTTTTAAAATTTGGCTAATAATTCAAACAAAATTATAACAAAAAATTTCAAAAACCAAATGATTTTACCGAAAACCAGCCTTAGTTTTTATCTTTTATTTTTGAAAATTGTGTTAATTTATCAAAATTCAGCTATAAATTCAAACGTTGACTTAAAAATATAAAAATTATTGTAAAGAAATGGTAAGCAAACAAGCATAATTATTAAAAAAAAAGAAAAAATTATATAGTCATAAAAATAAGGTTGTAAAAACTAAGTTAAATTACAAGTTTAGTCTTGAAAGTTGAGATTTGTGTTTATTTATTTTCGAATAGAACTTTTAAAATTTTAGATCATATATATGTGTTAATATAAAACCCTAAACTTTAAAAAATATCCAATATTAGATTCTTTGACTTTCAATTTTATGAGCAGCTAATAAATCATAATTTAAATTTTACATCTAATGAAACCTAACATGATTGTAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATCGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGTCATTACTGGTGATGGTCACTCACTTGTGTCTTACAATGTTGCCCCTTCTAGTTGGTCATTTGGACAAACCTTTGTTGGTAGACAGTTCCCTTAAAACACTTTCTAAATCATATCATCATGGATTTCATAGTTTAATTATCACATGTTAATTCTAATGTATTGGACTTTTTAAATTATTGATACGGTACGTATCTAGGTTTAGGATCGTAATATCCATTTACTCCAATCTCAATAGAAAAAAGTTATGTTTGAATGTTTGGACTTTAATTAGAGTTACTATTCTAAAATGTTTATCATTCAATCATTACCTAAATGGTAATGTAGCATGATGATTGATCAACTAAGATCATGTTTACTAGTCCATAATCAAAATTGTTGCATTGTAATGAATTTTTTTCATTATTCATAATTCATAAAATATTGTTAATTAGTTTTTCTGGAAAAATATTTAAATGGGTCTCATTTTTTATATTACCATTGATTGATTATGTTTACTGGGAAGTAAATGTAGTCTAAGTGATGATTTAGTAAACTAATACAAAAGTAAGGCAACCAAATAAAATAAGATCACCAAGCAAGAAATTTTGGTGGGCTAAGGCAAGTGAAATTTTGTTTTAAACTATTTTATTAAAAATTTCACTAGGCGTTATTTCATCGAGGTGGTTTAACTCTATTCATGCTTCATTTTATCATGTCATGTCAAACGATTATGATGAGACTTTGTAATGTAATAGTGATTTAATTTAACAAGACTCAAAATATCTACATCTAAAATAATATGTTAGCATGGTTAGCCATCCATTATATCCCACGTGGTAAAATATTTCCCATTTTGTAGGAAGAATCAAGTTTCTATCATGGGCTAAAAGTTGGCCTACACTATCTTTCTTCAACCAACTGAAACAAAGATTTAGATTTAAGGATATGGCAATGGACCCTAAGATAAAAGGATAAGGCTCTTTTGTTCCTATTGGTTCATCCAAAACTTCATAAAACTCATCTTAACCATCTGATCCTAAAGTATCATATTTTCTAACCCTTGATATCCATCAAACAAATCAACACCATAAATCTTAAATGCCATTACAAAGCCATGAACAAAATACACTTCTTGAACTCAAACCAAAGCCAGGTTTTCTTCTACCATCATTCTTGCTCAAAAAATGGTAACTGTCACGACCCAGGCTTCGGCCGTTGTCTTCCAGCCATGCACGTCAAGATCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTTAGTTCTTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGGTATAAATTATTTCAAACATATGTAAGACATGTGGAAATAGAGATGTGAAATAAAACAATCAACTTAAACATTTCTGTATGCAGTCTGCCAGGTGACAATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTGAAAACTTGAGGTGGTATGTGCAAGCCGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAATGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAACGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTGAGCCAACTCTCGAGGCCAAGGAGAAGGAGATTGCTAATGGTAAATGTCTCAGAAACAAAACTAGCTAATCAAATTCCTCAATTATTACATGTACAATAATGTAGCTGATCAAGTTTTGATGATGTTCTACAGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATCGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCGTGGCACAACACTATAGTTCAAACACTAAGGGGGTAG ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTACCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATCGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGCTTCGGCCGTTGTCTTCCAGCCATGCACGTCAAGATCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTTAGTTCTTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGTCTGCCAGGTGACAATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTGAAAACTTGAGGTGGTATGTGCAAGCCGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAATGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAACGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTGAGCCAACTCTCGAGGCCAAGGAGAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATCGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCGTGGCACAACACTATAGTTCAAACACTAAGGGGGTAG ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTACCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCGACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTCGTCCCCGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATCGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATGGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGCTTCGGCCGTTGTCTTCCAGCCATGCACGTCAAGATCGAGGTTTCTCTCGGGGTCTTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTTTAGTTCTTAATTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCAGGTTTGCCATCCCCAGCTTACCTTGATGGAAGTCTGCCAGGTGACAATGGGTTTGATCCTCTGGGACTTGCAGAGGATCCTGAAAACTTGAGGTGGTATGTGCAAGCCGAGCTCGTGAATGGCCGATGGGCGATGCTCGGAGTTGCAGGTATGGTATTGCCTGAAGTCTTCACAAATTTCGGAATCATCAATGTACCGAAATGGTACGATGCAGGGAAAGCTGAGTATTTCGCATCGTCATCGACTCTCTTTGTGATTGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGATATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAACGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTGAGCCAACTCTCGAGGCCAAGGAGAAGGAGATTGCTAATGGAAGACTGGCAATGTTGGCATTCTTGGGATTCATCGTTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCACATTTCAGACCCGTGGCACAACACTATAGTTCAAACACTAAGGGGGTAG MGFVGILVMGFLCLCSLVHGYGGRWINDAHATFYGGPDASGTLGTADYGIKTTALSPALFDNGLSCGACFEVRCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVVPVAYRRVKCARKGGIKFRIEGNPNFNLVLISNVGGAGDVHAVYIKGGRNGWKAMVRNWGQNWQSNDNLVGQSLSFKASAVVFQPCTSRSRFLSGSSGKFNRALSVKPTTSLVLNSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMVLPEVFTNFGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIVQHNVTGKGPFDNFLQHISDPWHNTIVQTLRG Homology
BLAST of CaUC04G078050 vs. NCBI nr
Match: KAG7037112.1 (Chlorophyll a-b binding protein P4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 768.8 bits (1984), Expect = 2.5e-218 Identity = 384/499 (76.95%), Postives = 405/499 (81.16%), Query Frame = 0
BLAST of CaUC04G078050 vs. NCBI nr
Match: GEU87931.1 (chlorophyll a-b binding protein P4, chloroplastic [Tanacetum cinerariifolium]) HSP 1 Score: 632.9 bits (1631), Expect = 2.1e-177 Identity = 320/476 (67.23%), Postives = 358/476 (75.21%), Query Frame = 0
BLAST of CaUC04G078050 vs. NCBI nr
Match: XP_038894825.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 495.7 bits (1275), Expect = 4.0e-136 Identity = 234/245 (95.51%), Postives = 239/245 (97.55%), Query Frame = 0
BLAST of CaUC04G078050 vs. NCBI nr
Match: XP_022949090.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 495.4 bits (1274), Expect = 5.3e-136 Identity = 233/245 (95.10%), Postives = 240/245 (97.96%), Query Frame = 0
BLAST of CaUC04G078050 vs. NCBI nr
Match: XP_022998805.1 (chlorophyll a-b binding protein P4, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 495.0 bits (1273), Expect = 6.9e-136 Identity = 233/245 (95.10%), Postives = 240/245 (97.96%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 441.0 bits (1133), Expect = 1.6e-122 Identity = 207/249 (83.13%), Postives = 221/249 (88.76%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1) HSP 1 Score: 429.5 bits (1103), Expect = 4.7e-119 Identity = 201/242 (83.06%), Postives = 218/242 (90.08%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy Swiss-Prot
Match: Q36718 (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare OX=4513 GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 6.8e-86 Identity = 147/200 (73.50%), Postives = 168/200 (84.00%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy Swiss-Prot
Match: Q9LDR9 (Expansin-A10 OS=Arabidopsis thaliana OX=3702 GN=EXPA10 PE=2 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 2.8e-71 Identity = 140/221 (63.35%), Postives = 160/221 (72.40%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy Swiss-Prot
Match: O80622 (Expansin-A15 OS=Arabidopsis thaliana OX=3702 GN=EXPA15 PE=2 SV=2) HSP 1 Score: 270.4 bits (690), Expect = 3.6e-71 Identity = 134/221 (60.63%), Postives = 159/221 (71.95%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy TrEMBL
Match: A0A6L2NNJ5 (Chlorophyll a-b binding protein, chloroplastic OS=Tanacetum cinerariifolium OX=118510 GN=Tci_059909 PE=3 SV=1) HSP 1 Score: 632.9 bits (1631), Expect = 1.0e-177 Identity = 320/476 (67.23%), Postives = 358/476 (75.21%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy TrEMBL
Match: A0A6J1GBT1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452545 PE=3 SV=1) HSP 1 Score: 495.4 bits (1274), Expect = 2.6e-136 Identity = 233/245 (95.10%), Postives = 240/245 (97.96%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy TrEMBL
Match: A0A6J1KDI3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493358 PE=3 SV=1) HSP 1 Score: 495.0 bits (1273), Expect = 3.3e-136 Identity = 233/245 (95.10%), Postives = 240/245 (97.96%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy TrEMBL
Match: A0A0A0LTE5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G033310 PE=3 SV=1) HSP 1 Score: 493.4 bits (1269), Expect = 9.7e-136 Identity = 230/244 (94.26%), Postives = 237/244 (97.13%), Query Frame = 0
BLAST of CaUC04G078050 vs. ExPASy TrEMBL
Match: A0A6J1C5V9 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008702 PE=3 SV=1) HSP 1 Score: 485.7 bits (1249), Expect = 2.0e-133 Identity = 229/245 (93.47%), Postives = 235/245 (95.92%), Query Frame = 0
BLAST of CaUC04G078050 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 ) HSP 1 Score: 429.5 bits (1103), Expect = 3.3e-120 Identity = 201/242 (83.06%), Postives = 218/242 (90.08%), Query Frame = 0
BLAST of CaUC04G078050 vs. TAIR 10
Match: AT1G26770.1 (expansin A10 ) HSP 1 Score: 270.8 bits (691), Expect = 2.0e-72 Identity = 140/221 (63.35%), Postives = 160/221 (72.40%), Query Frame = 0
BLAST of CaUC04G078050 vs. TAIR 10
Match: AT1G26770.2 (expansin A10 ) HSP 1 Score: 270.8 bits (691), Expect = 2.0e-72 Identity = 140/221 (63.35%), Postives = 160/221 (72.40%), Query Frame = 0
BLAST of CaUC04G078050 vs. TAIR 10
Match: AT2G03090.1 (expansin A15 ) HSP 1 Score: 270.4 bits (690), Expect = 2.6e-72 Identity = 134/221 (60.63%), Postives = 159/221 (71.95%), Query Frame = 0
BLAST of CaUC04G078050 vs. TAIR 10
Match: AT1G69530.3 (expansin A1 ) HSP 1 Score: 269.2 bits (687), Expect = 5.7e-72 Identity = 148/258 (57.36%), Postives = 174/258 (67.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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