CaUC04G077390 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G077390
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Transmembrane protein, putative
Location	Ciama_Chr04: 26760749 .. 26761057 (-)
RNA-Seq Expression	CaUC04G077390
Synteny	CaUC04G077390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGCCTCATCGCCGCCATTGTTACCTGACTTGCAGCAAACGCCGGCCTCCGACAGCAGCGGCGCCTGGCAGTCCTCTAGTTCTGTTGCGCCGTTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGTCGAATTTGCAGCCGCAGATATGAAGAAACGCCATCACAAGGAAGAAATTTTTTGGGATTTTTTAAAAGGAAGTTGCAGAGGCCTTGTGTTGAAGACGTTGAGATCGGTGTAAAAGGAAGAATGGAATTGGGTAATCGGAATTCTTCTTCTTAG

mRNA sequence

ATGGCCTCCGCCTCATCGCCGCCATTGTTACCTGACTTGCAGCAAACGCCGGCCTCCGACAGCAGCGGCGCCTGGCAGTCCTCTAGTTCTGTTGCGCCGTTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGTCGAATTTGCAGCCGCAGATATGAAGAAACGCCATCACAAGGAAGAAATTTTTTGGGATTTTTTAAAAGGAAGTTGCAGAGGCCTTGTGTTGAAGACGTTGAGATCGGTGTAAAAGGAAGAATGGAATTGGGTAATCGGAATTCTTCTTCTTAG

Coding sequence (CDS)

ATGGCCTCCGCCTCATCGCCGCCATTGTTACCTGACTTGCAGCAAACGCCGGCCTCCGACAGCAGCGGCGCCTGGCAGTCCTCTAGTTCTGTTGCGCCGTTCTTTGTGGTGATCTCTGTTTTAACTCTGCTTTCGATTATGTCTTGCTTTCTGGGTCGAATTTGCAGCCGCAGATATGAAGAAACGCCATCACAAGGAAGAAATTTTTTGGGATTTTTTAAAAGGAAGTTGCAGAGGCCTTGTGTTGAAGACGTTGAGATCGGTGTAAAAGGAAGAATGGAATTGGGTAATCGGAATTCTTCTTCTTAG

Protein sequence

MASASSPPLLPDLQQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEETPSQGRNFLGFFKRKLQRPCVEDVEIGVKGRMELGNRNSSS

Homology

[Close]

BLAST of CaUC04G077390 vs. NCBI nr
Match: XP_022137289.1 (uncharacterized protein LOC111008787 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MASASSPPLLPDLQQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYE 60
          MA+ASS PLLPD QQTPA    G  QSS S+ PFF VISVLTLLSI+SCFLGRICSR  E
Sbjct: 1  MATASSSPLLPDQQQTPA---GGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSE 60

Query: 61 ETPSQGRNFLGFFKRKLQRPCVEDVEIGVKGRMELGN 98
          ETP Q RN L   K +LQR CV+DVE+GVKG ++LG+
Sbjct: 61 ETPLQSRNCLRSLKGQLQRRCVKDVEVGVKG-IDLGD 93

[Close]

BLAST of CaUC04G077390 vs. NCBI nr
Match: XP_013463985.2 (uncharacterized protein LOC25486805 [Medicago truncatula] >RHN74195.1 hypothetical protein MtrunA17_Chr2g0307561 [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 4.6e-11
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MASASSPPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICS 60
           MASA+S  LL   QQ    T +S SS AW+SS S+ PFF VI VLT+L+++SC+L R+C+
Sbjct: 20  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 79

Query: 61  RRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
           RR E TP +   GR   G+ KR+ +R    DVE+G  G
Sbjct: 80  RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVG 116

[Close]

BLAST of CaUC04G077390 vs. NCBI nr
Match: KEH38020.1 (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 78.2 bits (191), Expect = 4.6e-11
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1  MASASSPPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICS 60
          MASA+S  LL   QQ    T +S SS AW+SS S+ PFF VI VLT+L+++SC+L R+C+
Sbjct: 1  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 60

Query: 61 RRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
          RR E TP +   GR   G+ KR+ +R    DVE+G  G
Sbjct: 61 RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVG 97

[Close]

BLAST of CaUC04G077390 vs. NCBI nr
Match: XP_012575091.1 (uncharacterized protein LOC101512774 [Cicer arietinum])

HSP 1 Score: 78.2 bits (191), Expect = 4.6e-11
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MASASSPPLLPDLQQ--------TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLG 60
           MA+A+S  LL   QQ        + +S SS AWQSS S+APFF VI +LT+L+++SC+L 
Sbjct: 1   MATAASSSLLQPQQQQANSGEVVSTSSSSSSAWQSSGSIAPFFAVIIILTILAVLSCYLS 60

Query: 61  RICSRRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
           R+C+RR E TP +   GR  LG+ KR+ +     DVE+G  G
Sbjct: 61  RMCNRR-ELTPLESIKGRGCLGWLKRRCRECMCRDVEVGGVG 101

[Close]

BLAST of CaUC04G077390 vs. NCBI nr
Match: KAF2298856.1 (hypothetical protein GH714_028346 [Hevea brasiliensis])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 7   PPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEET 66
           PP   ++QQ       S SS AW SS S+ PFF VISVL +L+I+SCF+GRICSRR    
Sbjct: 14  PPADGEIQQPSVPVAVSASSSAWHSSGSIGPFFGVISVLAVLAILSCFVGRICSRRAVAP 73

Query: 67  PSQG---RNFLGFFKRKLQRPCVEDVEIGVKGRMELG 97
           P      R +LG+ KR+ +     DVE+G    M  G
Sbjct: 74  PPDNIKHRGYLGWMKRRSRWCWGGDVEVGANKVMAFG 110

[Close]

BLAST of CaUC04G077390 vs. ExPASy TrEMBL
Match: A0A6J1C6U1 (uncharacterized protein LOC111008787 OS=Momordica charantia OX=3673 GN=LOC111008787 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MASASSPPLLPDLQQTPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYE 60
          MA+ASS PLLPD QQTPA    G  QSS S+ PFF VISVLTLLSI+SCFLGRICSR  E
Sbjct: 1  MATASSSPLLPDQQQTPA---GGGGQSSGSIGPFFAVISVLTLLSILSCFLGRICSRGSE 60

Query: 61 ETPSQGRNFLGFFKRKLQRPCVEDVEIGVKGRMELGN 98
          ETP Q RN L   K +LQR CV+DVE+GVKG ++LG+
Sbjct: 61 ETPLQSRNCLRSLKGQLQRRCVKDVEVGVKG-IDLGD 93

[Close]

BLAST of CaUC04G077390 vs. ExPASy TrEMBL
Match: A0A072VIN4 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25486805 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1  MASASSPPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICS 60
          MASA+S  LL   QQ    T +S SS AW+SS S+ PFF VI VLT+L+++SC+L R+C+
Sbjct: 1  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 60

Query: 61 RRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
          RR E TP +   GR   G+ KR+ +R    DVE+G  G
Sbjct: 61 RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVG 97

[Close]

BLAST of CaUC04G077390 vs. ExPASy TrEMBL
Match: A0A1S3EJH0 (uncharacterized protein LOC101512774 OS=Cicer arietinum OX=3827 GN=LOC101512774 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MASASSPPLLPDLQQ--------TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLG 60
           MA+A+S  LL   QQ        + +S SS AWQSS S+APFF VI +LT+L+++SC+L 
Sbjct: 1   MATAASSSLLQPQQQQANSGEVVSTSSSSSSAWQSSGSIAPFFAVIIILTILAVLSCYLS 60

Query: 61  RICSRRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
           R+C+RR E TP +   GR  LG+ KR+ +     DVE+G  G
Sbjct: 61  RMCNRR-ELTPLESIKGRGCLGWLKRRCRECMCRDVEVGGVG 101

[Close]

BLAST of CaUC04G077390 vs. ExPASy TrEMBL
Match: A0A396JCL6 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0307561 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MASASSPPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICS 60
           MASA+S  LL   QQ    T +S SS AW+SS S+ PFF VI VLT+L+++SC+L R+C+
Sbjct: 20  MASAASSALLQPQQQQSGETISSPSSSAWKSSGSIGPFFAVIIVLTILAVLSCYLTRMCN 79

Query: 61  RRYEETPSQ---GRNFLGFFKRKLQRPCVEDVEIGVKG 92
           RR E TP +   GR   G+ KR+ +R    DVE+G  G
Sbjct: 80  RR-EPTPLESIKGRGCFGWVKRRCRRCMSRDVEVGGVG 116

[Close]

BLAST of CaUC04G077390 vs. ExPASy TrEMBL
Match: A0A6A6LFR3 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_028346 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.2e-10
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 7   PPLLPDLQQ----TPASDSSGAWQSSSSVAPFFVVISVLTLLSIMSCFLGRICSRRYEET 66
           PP   ++QQ       S SS AW SS S+ PFF VISVL +L+I+SCF+GRICSRR    
Sbjct: 14  PPADGEIQQPSVPVAVSASSSAWHSSGSIGPFFGVISVLAVLAILSCFVGRICSRRAVAP 73

Query: 67  PSQG---RNFLGFFKRKLQRPCVEDVEIGVKGRMELG 97
           P      R +LG+ KR+ +     DVE+G    M  G
Sbjct: 74  PPDNIKHRGYLGWMKRRSRWCWGGDVEVGANKVMAFG 110

[Close]

BLAST of CaUC04G077390 vs. TAIR 10
Match: AT1G74055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-09
Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 1   MASASSPPLLPDLQQTP-------------------ASDSSGAWQSSSSVAPFFVVISVL 60
           MAS+SS   L  +QQ P                   A+ ++    SSSS+ PFF VISVL
Sbjct: 3   MASSSSSSSLFPIQQQPQQQLGGNEITPMATNANLIAAPNAPNHYSSSSIGPFFAVISVL 62

Query: 61  TLLSIMSCFLGRICSRRYEET----------PSQGRNFLGFFKRKLQRPCVEDVEIGVK 91
            +L+++SCFLGR C+R  + T            +    LG+ +RK +R    DVE G K
Sbjct: 63  IILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIKSGGLLGWLRRKWRRCLAGDVEAGAK 121

The following BLAST results are available for this feature:

BLAST of CaUC04G077390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137289.1	4.0e-23	68.04	uncharacterized protein LOC111008787 [Momordica charantia]	[more]
XP_013463985.2	4.6e-11	48.98	uncharacterized protein LOC25486805 [Medicago truncatula] >RHN74195.1 hypothetic...	[more]
KEH38020.1	4.6e-11	48.98	transmembrane protein, putative [Medicago truncatula]	[more]
XP_012575091.1	4.6e-11	46.08	uncharacterized protein LOC101512774 [Cicer arietinum]	[more]
KAF2298856.1	1.5e-09	45.36	hypothetical protein GH714_028346 [Hevea brasiliensis]	[more]

BLAST of CaUC04G077390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G077390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6U1	2.0e-23	68.04	uncharacterized protein LOC111008787 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A072VIN4	2.2e-11	48.98	Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=25486805 PE=4 ...	[more]
A0A1S3EJH0	2.2e-11	46.08	uncharacterized protein LOC101512774 OS=Cicer arietinum OX=3827 GN=LOC101512774 ...	[more]
A0A396JCL6	2.2e-11	48.98	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0307561 ...	[more]
A0A6A6LFR3	7.2e-10	45.36	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_028346 PE=4 SV=1	[more]

BLAST of CaUC04G077390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74055.1	6.0e-09	35.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33429:SF23	OS02G0709350 PROTEIN	coord: 1..92
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G077390.1	CaUC04G077390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane