CaUC04G076440 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G076440
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr04: 25735479 .. 25735697 (-)
RNA-Seq Expression	CaUC04G076440
Synteny	CaUC04G076440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATTCCGAGAACAGAGAGAGGAACAGTATGGAGAAGATTACAGCTCCCTTCCCTGTTCATAGCCAGGTGAGAAAGATCAAGGAGGAATCAGAGACGATCATCGATTGGCGACCAGGACAGCCGGAGATCAGACCGCCAACCGCCGCCTTTCGCCAGATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGCCCGATTTCAGTAGGGGAATCGTAG

mRNA sequence

ATGAGCAATTCCGAGAACAGAGAGAGGAACAGTATGGAGAAGATTACAGCTCCCTTCCCTGTTCATAGCCAGGTGAGAAAGATCAAGGAGGAATCAGAGACGATCATCGATTGGCGACCAGGACAGCCGGAGATCAGACCGCCAACCGCCGCCTTTCGCCAGATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGCCCGATTTCAGTAGGGGAATCGTAG

Coding sequence (CDS)

ATGAGCAATTCCGAGAACAGAGAGAGGAACAGTATGGAGAAGATTACAGCTCCCTTCCCTGTTCATAGCCAGGTGAGAAAGATCAAGGAGGAATCAGAGACGATCATCGATTGGCGACCAGGACAGCCGGAGATCAGACCGCCAACCGCCGCCTTTCGCCAGATCTCTCGCTCGCCGCTCGGAATCTCCGGCCGCCCGATTTCAGTAGGGGAATCGTAG

Protein sequence

MSNSENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGISGRPISVGES

Homology

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BLAST of CaUC04G076440 vs. NCBI nr
Match: TYJ99047.1 (hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 3  NSENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGI 62
          +S+ RERNS EKI  PFPVHSQVRKIKEESETI+DWRPGQPEIRPPTAAFRQISRSPLGI
Sbjct: 4  DSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSPLGI 63

Query: 63 SGRPISVGES 73
          SGRPISVG+S
Sbjct: 64 SGRPISVGDS 73

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BLAST of CaUC04G076440 vs. NCBI nr
Match: KGN64190.1 (hypothetical protein Csa_013611, partial [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 4.0e-25
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 4  SENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGIS 63
          S+ RE NSMEKI APFPVHSQVRKIKEES+T IDWRPGQPEIRPPTA+FRQISRSPLGIS
Sbjct: 5  SDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGIS 64

Query: 64 GRPISVGES 73
          GRPISVG+S
Sbjct: 65 GRPISVGDS 73

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BLAST of CaUC04G076440 vs. NCBI nr
Match: KAG6584306.1 (DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 5   ENRERNS-MEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF----RQISRSP 64
           EN ++N+ MEKI  PFPVHSQVRKIKEESE IIDWRPGQPEI+PP AAF    RQISRSP
Sbjct: 612 ENWKQNTRMEKIGTPFPVHSQVRKIKEESEMIIDWRPGQPEIKPPPAAFREINRQISRSP 671

Query: 65  LGISGRPISVGES 73
           LG+SGRPISVGES
Sbjct: 672 LGVSGRPISVGES 684

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BLAST of CaUC04G076440 vs. NCBI nr
Match: KAG7012158.1 (hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 4.3e-19
Identity = 58/76 (76.32%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 1  MSNSENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQ----IS 60
          ++N ENRE  +MEKI   FPVHSQVRKIKEESETIIDW PGQPEIRP  AAFR     IS
Sbjct: 6  VNNRENRE--AMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPIS 65

Query: 61 RSPLGISGRPISVGES 73
          RSPLGISGRPISVG+S
Sbjct: 66 RSPLGISGRPISVGDS 79

[Close]

BLAST of CaUC04G076440 vs. NCBI nr
Match: KAG6572977.1 (NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.2 bits (243), Expect = 3.0e-17
Identity = 55/72 (76.39%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MSNSENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQ----IS 60
          ++N ENRE  +MEKI   FPVHSQVRKIKEESETIIDW PGQPEIRP  AAFR     IS
Sbjct: 6  VNNRENRE--AMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPIS 65

Query: 61 RSPLGISGRPIS 69
          RSPLGISGRPIS
Sbjct: 66 RSPLGISGRPIS 75

[Close]

BLAST of CaUC04G076440 vs. ExPASy TrEMBL
Match: A0A5D3BIV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002510 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.1e-26
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 3  NSENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGI 62
          +S+ RERNS EKI  PFPVHSQVRKIKEESETI+DWRPGQPEIRPPTAAFRQISRSPLGI
Sbjct: 4  DSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSPLGI 63

Query: 63 SGRPISVGES 73
          SGRPISVG+S
Sbjct: 64 SGRPISVGDS 73

[Close]

BLAST of CaUC04G076440 vs. ExPASy TrEMBL
Match: A0A0A0LQJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 4  SENRERNSMEKITAPFPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGIS 63
          S+ RE NSMEKI APFPVHSQVRKIKEES+T IDWRPGQPEIRPPTA+FRQISRSPLGIS
Sbjct: 5  SDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSPLGIS 64

Query: 64 GRPISVGES 73
          GRPISVG+S
Sbjct: 65 GRPISVGDS 73

[Close]

BLAST of CaUC04G076440 vs. ExPASy TrEMBL
Match: A0A6A4PFG9 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0370691 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 21 VHSQVRKIKEESETIIDWRPGQPEIRPPTAAFRQISRSPLGISGRPISVGES 73
          +HSQVRKIK+ESE I+DW PGQPEIRP    FR+ISRSPLGISGR ISVGES
Sbjct: 16 IHSQVRKIKQESEKILDWSPGQPEIRP---VFRRISRSPLGISGRSISVGES 64

[Close]

BLAST of CaUC04G076440 vs. ExPASy TrEMBL
Match: A0A0B2SM01 (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_041948 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-12
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 5  ENRERNSMEKITAP-FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF-RQISRSPLGI 64
          EN + N  E+      P+HSQV KI++ESE I+DW PG+PEIRP      RQISRSPLGI
Sbjct: 2  ENMKMNKDERFAQKGVPIHSQVMKIRQESEKIVDWSPGKPEIRPVLREISRQISRSPLGI 61

Query: 65 SGRPISVGES 73
          SGRPISVGES
Sbjct: 62 SGRPISVGES 71

[Close]

BLAST of CaUC04G076440 vs. ExPASy TrEMBL
Match: A0A314ZBL8 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28850 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 19 FPVHSQVRKIKEESETIIDWRPGQPEIRPPTAAF---RQISRSPLGISGRPISVGES 73
          FPVHSQVRKIK+ESE IIDW PG+PE+RP        RQISRSPLGIS RPISVG+S
Sbjct: 3  FPVHSQVRKIKQESEKIIDWLPGKPEMRPVLGEITMTRQISRSPLGISCRPISVGDS 59

[Close]

BLAST of CaUC04G076440 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 21 VHSQVRKIKEESETIIDWRPGQPEIRPPTAAF--RQISRSPLGISGRPISVG 71
          +HSQV KIK+E E I      QPE+R   +    RQ SRSPLG+  R ISVG
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRRVLSEIKRRQRSRSPLGLGERSISVG 66

The following BLAST results are available for this feature:

BLAST of CaUC04G076440 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99047.1	1.0e-25	88.57	hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa]	[more]
KGN64190.1	4.0e-25	88.41	hypothetical protein Csa_013611, partial [Cucumis sativus]	[more]
KAG6584306.1	1.3e-20	79.45	DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG7012158.1	4.3e-19	76.32	hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6572977.1	3.0e-17	76.39	NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of CaUC04G076440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G076440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIV4	5.1e-26	88.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LQJ2	1.9e-25	88.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1	[more]
A0A6A4PFG9	1.1e-12	78.85	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0370691 PE=4 SV=1	[more]
A0A0B2SM01	1.4e-12	62.86	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_041948 PE=4 SV=1	[more]
A0A314ZBL8	1.9e-12	73.68	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_288...	[more]

BLAST of CaUC04G076440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67920.1	1.4e-04	51.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..72
None	No IPR available	PANTHER	PTHR34780:SF5	OS08G0427800 PROTEIN	coord: 3..71
None	No IPR available	PANTHER	PTHR34780	OS08G0427800 PROTEIN	coord: 3..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G076440.1	CaUC04G076440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane