CaUC04G075030 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G075030
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Legume-specific protein
Location	Ciama_Chr04: 24142382 .. 24145076 (+)
RNA-Seq Expression	CaUC04G075030
Synteny	CaUC04G075030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTCTGATTCCATTCCTTTACAAAGCCATTTTACAGTATAGAAATGGCAATAATGAAACTTCTTCATGGTGTTGTGATGAGTCTTCTTCTTCTTCTTCTTCTTCTTCAGAAGCTTTATATGTAAGACTTGCAGGTGATGATCAAGACTACATCATTAATAATCCTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCAAATGGCAGCAGCAGTGTCATCATATCAACTGATAATTCTGGGATTCAATCTCCTCTCTGTCGTTTGCTTTCCAATCGAGTTGCTGCTTGAAAGGAACAATATTGAAGTTTTTATTTTTTATTTTTTATTATTTTTTATTTTTTAAAATAGTTATGTTGATGGTTTTAATTATTTGTTGTGGTTGTGTCTTGGTTTTGGAAGTAATTAAAAGGGTTGTGAATGTGTGAAGAAAGAGACCTCCAAAGGGAGAATTGTGTTTGTGTGTAGCCTAAAAATGGAGTGTGTCAATTGTTAATATATAGTGTGTGGTTGTGATTAATATAATTAATTGTTAATGAAAGTTTGATTTGATCTCTCAAAAGTCGTAAAGCCCAAAAGGGCAAAACGGGCATGTGTGCTGAAAAATATTCAAACAGTTGGTATTTTGAGGTCTAAAATGAAAACTGTCTAAATTTTTTAAAATAGTGGTAATTGACCTTTTGTTGACATGATTATGGATGAGTGAAGTTACAAATTTACCCTTCCTTTTCTTTTTTTTCTTTTCTTTTCTTCTTCTTCTCTTCTCTTCTCTAGCGAGCAACCATATTAGATCTATCAAACACGAACTTGAGCATGCTGGTAGCGAGCACCCAAATGTTGGATAGCGAGACTAGGAGAGAGCAAGAAGGAGGAGAGTGATCTGTTTGAGAGGAGAATGATTTGTGGAGAGGAGAGCAGTCTGTGAGAGAAGGAAAGGGAACGATAGAGAGAGAAGAGCGAAAGAACGAACATCGAGATTGGTCATTCTACGTGCACGTGAGGGTTTCGTTTTGTAATTTCACCTAGTGTCGATGTTAGCAAAGGGTAAAAAAACCTTCATTTTAAAAAAAGCCAGGAAAATTTTTTTTCCCTCTCAATTTGGGTCATTCGTACTAAAACCCTACGTGTATTGGTGGTTACTCAAAAAAAAAAAAAACATTTTTTTTTAGGTAAGTATTTTTGTTATGTTATGAAAATCCACTAGAAGCAACCAACCGTATTGTCTGCACCAACTACCATTTAGCTAATAAGCTCGTGGATATCGAGGTTCCACAAGCAGTATTTTCTGATACTGTATTTGAAGCATTGTTGGAATTCTTTATAATATGTAACTGAAACAAGTTCTTGCAAATAGTAAAAAGGGCCGTTTTGAATGTGGGGCTGTTTGAATTAGCCCTTCCATCGTATTTCTCCCGAGATTAAAGAAAAGATGGACAAAAACTTATGTTTAAGCTAAATTAACTGGAGTTGCTTGTTTGGATTTAACTTAATACCTTAAATCCACAAAGATTGGTTACTAAATAATAGTTATAATAATTTCCATTTCCATTTTTCTAACTTGTAAGTTTAAAGTGTACCTATTTAAGTCCGGTAAAATATATAAATTTCAAAAAAAAAAAAAAAAAAAAAACTTGTAAAAAGAAATAACCACTTTTGGGTGGAATGCTAAATTAATTTTCTTTTTCATCTCATTTACTTGTTCAATGATTGTCTTCAACTTATATGATTCTGAAGATTGCTTACTAGTAATTAATTGATCACATTATATTTTTTCCTTTCATTAAAGGTCCGTTCACACTTTTATTGTACAAGAAATAAAAATCATCTTCATAATTAGCATTTAGTAGTACGATCCACATACTCAAAACCTATATCATTAATTTGTTAAAAACATGATAAAAGTATAAACTAAAATGATTATTTTTTACAACTTCGAGAACTAAAATAGATATTTTAAAAGTTTAGGAGTTAATTTAGAACAAATCTGATACTTCAAACGCCAAAATAAACATTTTAAATGTTTAGAAACCAAATCAGAACATACTTGAAAATTTTAGAGGCTAAAATATATGAGATCTAAACCCTTTTCTCTTAAATACAATAAATGTGTGCAAAAGGATTTTTTTTTCTTTTTTTTTTTTTTAAAGATCACAATGAAATTTGGATACATTAAAAAAATAATAATTAAACATCAACTTTTGAAATAGTAATATAAAGAGAGATGAGAAATCAAGCGAGGAAGGTAGAAAAAAAAGAGATTCAAGTAACGAACTACATAGTACGAGATTGAACATTGACCTAAAAGATATAATAAAAAAAGGTTGGTATTCAACTAGATTTTGAAGAAATTTAATTCGTAGAATTTGAAATTTGCATTTCTATTAATTTCAATACAATATATTGAATACGATCTCTAATAAATGGTCCTTTGATGCTTTCTATCGAAAAGTAAATTTTAATCATTGCGCTTGTTGATCTTTTTGAATGATCAACCTTTGGACTTGATGATTTTTTTGGATGATAGGCCTTTGGGCTTGTCGATCTTCTTGGATCATCAGCTTTTAGACTTGATGATTTTTCTGGAGGATTGGTTTTTAGGCTTGATGATCTTCTTGGTTCAGCTTCTGACTTGTTAATCGCCTTGGGTCAGCTTCTAGCTTATCAACCGCCTTAG

mRNA sequence

ATGGAGGGTCTGATTCCATTCCTTTACAAAGCCATTTTACAGTATAGAAATGGCAATAATGAAACTTCTTCATGGTGTTGTGATGAGTCTTCTTCTTCTTCTTCTTCTTCTTCAGAAGCTTTATATGTAAGACTTGCAGGTGATGATCAAGACTACATCATTAATAATCCTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCAAATGGCAGCAGCAGTGTCATCATATCAACTGATAATTCTGGGATTCAATCTCCTCTCTGTCCCTTTGGGCTTGTCGATCTTCTTGGATCATCAGCTTTTAGACTTGATGATTTTTCTGGAGGATTGGTTTTTAGGCTTGATGATCTTCTTGGTTCAGCTTCTGACTTGTTAATCGCCTTGGGTCAGCTTCTAGCTTATCAACCGCCTTAG

Coding sequence (CDS)

ATGGAGGGTCTGATTCCATTCCTTTACAAAGCCATTTTACAGTATAGAAATGGCAATAATGAAACTTCTTCATGGTGTTGTGATGAGTCTTCTTCTTCTTCTTCTTCTTCTTCAGAAGCTTTATATGTAAGACTTGCAGGTGATGATCAAGACTACATCATTAATAATCCTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCAAATGGCAGCAGCAGTGTCATCATATCAACTGATAATTCTGGGATTCAATCTCCTCTCTGTCCCTTTGGGCTTGTCGATCTTCTTGGATCATCAGCTTTTAGACTTGATGATTTTTCTGGAGGATTGGTTTTTAGGCTTGATGATCTTCTTGGTTCAGCTTCTGACTTGTTAATCGCCTTGGGTCAGCTTCTAGCTTATCAACCGCCTTAG

Protein sequence

MEGLIPFLYKAILQYRNGNNETSSWCCDESSSSSSSSSEALYVRLAGDDQDYIINNPPFSSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSPLCPFGLVDLLGSSAFRLDDFSGGLVFRLDDLLGSASDLLIALGQLLAYQPP

Homology

[Close]

BLAST of CaUC04G075030 vs. NCBI nr
Match: KGN54276.1 (hypothetical protein Csa_018169 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-16
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   MEGLIPFLYKAILQYRNGNNET---------SSWCCD---ESSSSSSSSSEALYVRLAGD 60
           MEGLIPFLYKAILQY+NGN+ET         S W CD   +S  SSSSSSEALYVRLAGD
Sbjct: 1   MEGLIPFLYKAILQYKNGNSETNNNNMNQPSSYWWCDADHQSPPSSSSSSEALYVRLAGD 60

Query: 61  DQDYIINNPPFSSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSPLC 95
           DQDYI  N   +++   SSSSSSS+ N + SVIIS+ NSGIQSPLC
Sbjct: 61  DQDYINTNT--NNNLPFSSSSSSSTFNDTKSVIISS-NSGIQSPLC 103

[Close]

BLAST of CaUC04G075030 vs. NCBI nr
Match: KAG7027348.1 (hypothetical protein SDJN02_11360, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-12
Identity = 57/99 (57.58%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETSSWCCDESSSSSSSSSEALYVRLAGDDQD-YIINNPPF 60
          MEGLIPF+YKAI+++RNGNN  + WCCD  SS+S       Y RL GDD + + IN    
Sbjct: 1  MEGLIPFVYKAIVEFRNGNNNQTMWCCDSPSSAS-------YQRLPGDDDELHNINGASS 60

Query: 61 SSSSSSSSSSSSSSSNGSSSVIISTDNSGI-QSPLCPFG 98
          SSSSSSSSSSSSSSS+ SSS  +    SG+ QSPLC  G
Sbjct: 61 SSSSSSSSSSSSSSSSSSSSDSVLISGSGVDQSPLCNGG 92

[Close]

BLAST of CaUC04G075030 vs. NCBI nr
Match: KAG6595338.1 (hypothetical protein SDJN03_11891, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETSSWCCDESSSSSSSSSEALYVRLAGDDQDYIINNPPFS 60
          MEGLIPF+YKAI+++RNGNN  + WCCD  SS+S       Y RL GDD +  ++N   +
Sbjct: 1  MEGLIPFVYKAIVEFRNGNNSQTMWCCDSPSSAS-------YQRLPGDDDE--LHNINGA 60

Query: 61 SSSSSSSSSSSSSSNGSSSVIISTDNSGI-QSPLCPFG 98
          SSSSSSSSSSSSSS+ S SV+IS   SG+ QSPLC  G
Sbjct: 61 SSSSSSSSSSSSSSSSSDSVLIS--GSGVDQSPLCNGG 87

[Close]

BLAST of CaUC04G075030 vs. NCBI nr
Match: KAG7033819.1 (hypothetical protein SDJN02_03544, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7033820.1 hypothetical protein SDJN02_03545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 51/96 (53.12%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETS---SWCCDESSSSSSSSSEALYVRLAGDDQDYIINNP 60
          MEGLIPFLYKAI+ YRNG N+     SW CDES S+S+S     YVRLAGD+QD      
Sbjct: 1  MEGLIPFLYKAIVHYRNGYNQADSQPSWRCDESPSASAS-----YVRLAGDEQD------ 60

Query: 61 PFSSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSPL 94
                   S+SSSS SNGS    +    SGIQSPL
Sbjct: 61 ---------SASSSSFSNGS----VRISASGIQSPL 72

[Close]

BLAST of CaUC04G075030 vs. NCBI nr
Match: KAG6603637.1 (hypothetical protein SDJN03_04246, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 51/96 (53.12%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGNNETS---SWCCDESSSSSSSSSEALYVRLAGDDQDYIINNP 60
          MEGLIPFLYKAI+ YRNG N+     SW CDES S+S+S     YVRLAGD+QD      
Sbjct: 1  MEGLIPFLYKAIVHYRNGYNQADSQPSWRCDESPSASAS-----YVRLAGDEQD------ 60

Query: 61 PFSSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSPL 94
                   S+SSSS SNGS    +    SGIQSPL
Sbjct: 61 ---------SASSSSFSNGS----VRISASGIQSPL 72

[Close]

BLAST of CaUC04G075030 vs. ExPASy TrEMBL
Match: A0A0A0L2A8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296290 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = 0


Query: 1   MEGLIPFLYKAILQYRNGNNET---------SSWCCD---ESSSSSSSSSEALYVRLAGD 60
           MEGLIPFLYKAILQY+NGN+ET         S W CD   +S  SSSSSSEALYVRLAGD
Sbjct: 1   MEGLIPFLYKAILQYKNGNSETNNNNMNQPSSYWWCDADHQSPPSSSSSSEALYVRLAGD 60

Query: 61  DQDYIINNPPFSSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSPLC 95
           DQDYI  N   +++   SSSSSSS+ N + SVIIS+ NSGIQSPLC
Sbjct: 61  DQDYINTNT--NNNLPFSSSSSSSTFNDTKSVIISS-NSGIQSPLC 103

[Close]

BLAST of CaUC04G075030 vs. ExPASy TrEMBL
Match: S5VRI4 (Legume-specific protein OS=Aeschynomene sensitiva OX=552036 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGN-NETSSWCCDESSSSSSSSSEALYVRLAGDDQDYIINNPPF 60
          MEGLIPF+YKAI+QY+NGN     +W C+  S S        YVRL GD   +    P  
Sbjct: 1  MEGLIPFVYKAIMQYKNGNEGAIGTWICESPSYS--------YVRLPGDSGRF--QTPAS 60

Query: 61 SSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSP 93
           S+S+ SS+S+SSSS+ S+ V++S   SG+QSP
Sbjct: 61 CSASTPSSNSASSSSSSSAQVLVS---SGVQSP 80

[Close]

BLAST of CaUC04G075030 vs. ExPASy TrEMBL
Match: S5VRI7 (Legume-specific protein OS=Aeschynomene pratensis OX=561494 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGN-NETSSWCCDESSSSSSSSSEALYVRLAGDDQDYIINNPPF 60
          MEGLIPF+YKAI+QY+NGN     +W C+  S S        YVRL GD   +    P  
Sbjct: 1  MEGLIPFVYKAIMQYKNGNEGAIGTWICESPSYS--------YVRLPGDSGRF--QTPAS 60

Query: 61 SSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSP 93
           S+S+ SS+S+SSSS+ S+ V++S   SG+QSP
Sbjct: 61 CSASTPSSNSASSSSSSSAQVLVS---SGVQSP 80

[Close]

BLAST of CaUC04G075030 vs. ExPASy TrEMBL
Match: S5VDS7 (Legume-specific protein OS=Aeschynomene deamii OX=561488 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGN-NETSSWCCDESSSSSSSSSEALYVRLAGDDQDYIINNPPF 60
          MEGLIPF+YKAI+QY+NGN     +W C+  S S        YVRL GD   +     P 
Sbjct: 1  MEGLIPFVYKAIMQYKNGNEGAIGTWICESPSYS--------YVRLPGDSGRF---QTPA 60

Query: 61 SSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSP 93
          S S+S+ +S+ +SSS+ ++ VI+S   SG+QSP
Sbjct: 61 SCSASTPASNPASSSSAAAQVIVS---SGVQSP 79

[Close]

BLAST of CaUC04G075030 vs. ExPASy TrEMBL
Match: S5VL92 (Legume-specific protein OS=Aeschynomene filosa OX=449475 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1  MEGLIPFLYKAILQYRNGN-NETSSWCCDESSSSSSSSSEALYVRLAGDDQDYIINNPPF 60
          MEGLIPF+YKAI+QY+NGN     +W C+  S S        YVRL GD   +     P 
Sbjct: 1  MEGLIPFVYKAIMQYKNGNEGAIGTWICESPSYS--------YVRLPGDSGRF---QTPA 60

Query: 61 SSSSSSSSSSSSSSSNGSSSVIISTDNSGIQSP 93
          S S+S+ +S+ +SSS+ ++ VI+S   SG+QSP
Sbjct: 61 SCSASTPASNPASSSSAAAQVIVS---SGVQSP 79

The following BLAST results are available for this feature:

BLAST of CaUC04G075030 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54276.1	2.3e-16	65.09	hypothetical protein Csa_018169 [Cucumis sativus]	[more]
KAG7027348.1	2.0e-12	57.58	hypothetical protein SDJN02_11360, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595338.1	1.0e-11	58.16	hypothetical protein SDJN03_11891, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033819.1	1.5e-07	53.13	hypothetical protein SDJN02_03544, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6603637.1	1.5e-07	53.13	hypothetical protein SDJN03_04246, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CaUC04G075030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC04G075030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2A8	1.1e-16	65.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296290 PE=4 SV=1	[more]
S5VRI4	4.4e-05	47.31	Legume-specific protein OS=Aeschynomene sensitiva OX=552036 PE=4 SV=1	[more]
S5VRI7	4.4e-05	47.31	Legume-specific protein OS=Aeschynomene pratensis OX=561494 PE=4 SV=1	[more]
S5VDS7	4.9e-04	45.16	Legume-specific protein OS=Aeschynomene deamii OX=561488 PE=4 SV=1	[more]
S5VL92	4.9e-04	45.16	Legume-specific protein OS=Aeschynomene filosa OX=449475 PE=4 SV=1	[more]

BLAST of CaUC04G075030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..80
None	No IPR available	PANTHER	PTHR34670:SF8	EXPRESSED PROTEIN	coord: 1..94
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G075030.1	CaUC04G075030.1	mRNA