CaUC04G074550 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G074550
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Histone H2A
Location	Ciama_Chr04: 23654240 .. 23656895 (-)
RNA-Seq Expression	CaUC04G074550
Synteny	CaUC04G074550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATGTCATCACGAATACGGCGTGTGTCATTCACTTTCCATTTTATTTCTCATTTCATAAAAATGTAATCTCCGTTGAAAACCGGTCGTTAACATCCCTCACATTTTCCCGAGAAAATTTTCTCTTCCAATGGACTCTGGCGTCAAGGCGAAGAAAGGCGTCGCCGGCAGAAGGGGCGTCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTTCTTGAGTACCTCGCTGCAGAGGTGAATATATACTACTTCGTTCTTCTCAGTTTTTCACTTTCGATTTACTTGATTTAGGGTTTCTTTTTTCAGCTTATTACATGTTTTGAATGCGCGTGCGAAATCAGAACTTTTATTCGATGGATTCGATGCTTGGATTGAAGTGCATTTTCTTTATTTCATGTCAATGACTTGGAATTTTATTATTCTCTTAGCTCTTTCTTTTCGGAGATAAAATCCTCAATTTGATGGAATTAGGTCTTTCTTTTCATTCTCTCTAATCTATTCTCTGATTTCTCTATGCGGTTTTGTTTATATAGACAAGTCCATTCTAAGTTTTCAGACAATCTAGAAAGAAAGAAAAAAATCACCTAAAGTTTTTGTTTTTTTTTTAGAAAAGAAATTTAAGGTTTGTTTGATATCAGTTTTACTTTTATTTTCTGTTTTTGAAATTTATGCTAGTTTCCTCATTTTTATTTTTGTTTTCACATTTGATAAAGGAACACTTGAATTACTGATCAAATTCTCAAAACAAATATAAGTTTTGGTTTGATTTTTTTTAAAAAACATAGAGAATACAACAAGTGAATGTGGAAATAGTATTTTTAAGCTTAATTTTTTAAAATATTTTTTGAAAAATAAAAAATGAAATAGTTATTAAATGGGATCTGAATTATTTTCTCATGTTTACAATTTGAAAAATGATTTTGAATGAAAGTATTTTATGCAAGGAGAAAATTAAAAATAAAAACTTCATCAAACGCTAGTGATAAAAAAATAAGAAAAACAGAAATTTGTAAACAAATAATTTGATGAAATAGAATTTATTTCAGGTGTTCGTTGTCTTTTTGAAGATCTTTGTTTGGTAGAGATTTAATTTGAAAAAGCGTACAAATGTTGTTTACAATCCATATATAATTCAAATACCGTTTTAAAAAATTAATTCATTCAAATATTTAATTTGAAAAATTAGAAATTCAATCTGAATAGATTCCCAACTGCCCTCGGTATCCGATTTGCTTGCTTTTACAACTCTTTTCCGCTGTCCTTTATGTCCTGATTCCAATGCTTTATCCAAACTTGACTTTTGAAAGCTCAAAGCAGAGGGCCAAATATAGGATTTATTTATCAATGGTTTAATTTTGGCTTCATAGAAATGGCTGCCTTTTTTACTCTTTTTTAGTTCAACAAATGCTAGGTCGGATATCAAGCCATCGAACTTTGTAATGGTAAATTGATGTCTTTGTCTATTGAACTATGTTCGGTTTGACACCTAAATTGAAATTGAAATAGAACTTTGAATTTCTATGTCTCTTATCAAGAGAAACTTTGATCATCCAACGAAGTTTAGTAGAATTCTTTTAATTTATTCACTGATGGAATCTTACACATAGGAGTTTGATGATAATACAAGAAGTGATATTGCATACTGAGCAATTGGGTTATTTTGTTAAGATATCTATAAAAGATGACATATATGCATAACTAACTCATAAACTTAAAATGTTTTAATGAGTTTACGGGTTCGATTGATAGTGGCCACCTACCTAAGATTTAATATCTTACGAGTTTTCTTAACACCCAAATGTTGTAGGGTCATGCGGATTGTTTCGTGAGATTAGTTGAAGTGCGCGTAAGCTGGCCCAGACACTCATTGATATAAATATAAAAGAAAAAGTATTTGAGTTCGAGAATTTAAATTCAAAATACTTATTATAATTAATATCAATAATTACTTGTTGAGTTTTTGTACGAATTTTCAAGTAAGGAAGTATTAAGAACACCTATGGAAGATTAAGCATACTATATCCTATCAGTTTAAGACCAAATTATGCTTTAGGTTTTGGAACTCGCTGGGAATGCGGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTCCTTTTGGCTGTGAGAAACGACGAGGAACTTGGGAAGCTTCTTGCCGGGGTGACGATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGCCGGCAGCAGCATCCAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAGCTTAGCTTCTCATATGCCCTCACCTACTTAATTCTGTATTTAGATTGGAGTTATCTTCATGTTTAGGACCACTTTTATCTGTTTGTGCTTTTATATTGTAGGACATTCCTTTGTGTTCTCACAACTCAGTTGAAATGATGTAAAATTTAATATCTATGAATCTTTGTACCTTCTCTACTAATGGGTTAATGTATGTAGGAGGCTTAATGCATGGATTGAATGATTGGACCATTGGATGGATAAAATTAG

mRNA sequence

CCATGTCATCACGAATACGGCGTGTGTCATTCACTTTCCATTTTATTTCTCATTTCATAAAAATGTAATCTCCGTTGAAAACCGGTCGTTAACATCCCTCACATTTTCCCGAGAAAATTTTCTCTTCCAATGGACTCTGGCGTCAAGGCGAAGAAAGGCGTCGCCGGCAGAAGGGGCGTCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTTCTTGAGTACCTCGCTGCAGAGGTTTTGGAACTCGCTGGGAATGCGGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTCCTTTTGGCTGTGAGAAACGACGAGGAACTTGGGAAGCTTCTTGCCGGGGTGACGATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGCCGGCAGCAGCATCCAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAGCTTAGCTTCTCATATGCCCTCACCTACTTAATTCTGTATTTAGATTGGAGTTATCTTCATGTTTAGGACCACTTTTATCTGTTTGTGCTTTTATATTGTAGGACATTCCTTTGTGTTCTCACAACTCAGTTGAAATGATGTAAAATTTAATATCTATGAATCTTTGTACCTTCTCTACTAATGGGTTAATGTATGTAGGAGGCTTAATGCATGGATTGAATGATTGGACCATTGGATGGATAAAATTAG

Coding sequence (CDS)

ATGGACTCTGGCGTCAAGGCGAAGAAAGGCGTCGCCGGCAGAAGGGGCGTCGGTCCTAAGAAGAAGCCTGTCTCTCGCTCCGTCAAAGCCGGCCTCCAGTTTCCCGTCGGCAGAATCGGCCGCTACTTGAAGAATGGCCGCTACTCACGACGAGTCGGAACTGGCGCTCCGGTTTACCTTGCTGCTGTTCTTGAGTACCTCGCTGCAGAGGTTTTGGAACTCGCTGGGAATGCGGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGACACGTCCTTTTGGCTGTGAGAAACGACGAGGAACTTGGGAAGCTTCTTGCCGGGGTGACGATCGCTCATGGTGGGGTGCTTCCAAACATCAACCCAGTCCTTCTTCCAAAGAAATCCGAGAGGCCGGCAGCAGCATCCAAGGAGCCCAAGTCTCCCTCCAAGGGCACCAAGTCCCCAAAGAAGGCCTAG

Protein sequence

MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERPAAASKEPKSPSKGTKSPKKA

Homology

[Close]

BLAST of CaUC04G074550 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 271.9 bits (694), Expect = 3.3e-69
Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MDSG KAKKG AGRRG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVYL
Sbjct: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSER AAA KEPKSPSKGTKSPKKA
Sbjct: 121 NPVLLPKKSER-AAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of CaUC04G074550 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRR G GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSER   A+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of CaUC04G074550 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66
Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRR G   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSER AAA+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSER-AAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of CaUC04G074550 vs. NCBI nr
Match: XP_038994985.1 (histone H2A-like [Hibiscus syriacus] >KAE8733755.1 Histone H2A [Hibiscus syriacus])

HSP 1 Score: 261.2 bits (666), Expect = 5.7e-66
Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD G K KKG  GR+G GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+RVGTGAPVYL
Sbjct: 1   MDGGAKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSE+  AASKEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKSEK--AASKEPKSPSKATKSPKKA 150

[Close]

BLAST of CaUC04G074550 vs. NCBI nr
Match: XP_039043508.1 (histone H2A [Hibiscus syriacus] >KAE8664998.1 Histone H2A [Hibiscus syriacus])

HSP 1 Score: 260.4 bits (664), Expect = 9.8e-66
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD+G K KKG  GR+G GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+RVGTGAPVYL
Sbjct: 1   MDTGAKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSE+  AASKEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKSEK--AASKEPKSPSKSTKSPKKA 150

[Close]

BLAST of CaUC04G074550 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-66
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+ A+ +K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of CaUC04G074550 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.0e-66
Identity = 133/153 (86.93%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD+G K KKG   R+G GPKKKPVSRSVKAGLQFPVGRIGR+LK GRY++RVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSER-PAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKK+E+  AAA+KEPKSP+K TKSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of CaUC04G074550 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-63
Identity = 128/153 (83.66%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD+  K KKG  GR+G GP+KK V+RS++AGLQFPVGRIGRYLK GRY++RVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERPAAASKEPKSPS-KGTKSPKKA 153
           NPVLLPKK+ER    SKEPKSP  K  KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of CaUC04G074550 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.4e-61
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 3   SGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAA 62
           +G K KKG AGR+  GP+KK VSRSVKAGLQFPVGRIGRYLK GRY++R+GTGAPVYLAA
Sbjct: 8   AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 67

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINP
Sbjct: 68  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 127

Query: 123 VLLPKK-SERPAAASKEPKSPSKGT-KSPKKA 153
           VLLPKK +E+ AAA KE KSP K   KSPKKA
Sbjct: 128 VLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

[Close]

BLAST of CaUC04G074550 vs. ExPASy Swiss-Prot
Match: Q94E96 (Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.4e-61
Identity = 128/152 (84.21%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 3   SGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAA 62
           +G K KKG AGR+  GP+KK VSRSVKAGLQFPVGRIGRYLK GRY++R+GTGAPVYLAA
Sbjct: 8   AGGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAA 67

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINP
Sbjct: 68  VLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINP 127

Query: 123 VLLPKK-SERPAAASKEPKSPSKGT-KSPKKA 153
           VLLPKK +E+ AAA KE KSP K   KSPKKA
Sbjct: 128 VLLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

[Close]

BLAST of CaUC04G074550 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 146/152 (96.05%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MDSG KAKKG AGRRG GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVYL
Sbjct: 1   MDSGGKAKKGAAGRRGGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSER AAA KEPKSPSKGTKSPKKA
Sbjct: 121 NPVLLPKKSER-AAAGKEPKSPSKGTKSPKKA 151

[Close]

BLAST of CaUC04G074550 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.0e-68
Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRR G GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSER   A+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of CaUC04G074550 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.0e-68
Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRR G GPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSER   A+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

[Close]

BLAST of CaUC04G074550 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.6e-67
Identity = 144/153 (94.12%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG KAKKG AGRR G   KKKPVSRSVKAGLQFPVGRIGRYLKNGRYS+RVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           INPVLLPKKSER AAA+KEPKSPSKGTKSPKKA
Sbjct: 121 INPVLLPKKSER-AAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of CaUC04G074550 vs. ExPASy TrEMBL
Match: A0A6A3CW06 (Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000991pilonHSYRG00051 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.8e-66
Identity = 139/152 (91.45%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYL 60
           MD G K KKG  GR+G GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYS+RVGTGAPVYL
Sbjct: 1   MDGGAKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           NPVLLPKKSE+  AASKEPKSPSK TKSPKKA
Sbjct: 121 NPVLLPKKSEK--AASKEPKSPSKATKSPKKA 150

[Close]

BLAST of CaUC04G074550 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 253.8 bits (647), Expect = 8.5e-68
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           INP+LLPKKSE+ A+ +K PKSPSK TKSPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of CaUC04G074550 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 240.4 bits (612), Expect = 9.8e-64
Identity = 134/177 (75.71%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRR-GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           MDSG K KKG AGRR G GPKKKPVSRSVK+GLQFPVGRIGRYLK GRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSE+ A+ +K PKSPSK TKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of CaUC04G074550 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 202.6 bits (514), Expect = 2.3e-52
Identity = 113/153 (73.86%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 1   MDSGVKAKKGVAGRRGVG-PKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVY 60
           M+S  K KK   GR+  G PK K VS+S+KAGLQFPVGRI R+LK GRY++R+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSERPAAASKEPKSPSKGTKSPKKA 153
           IN VLLPKKS    A  K  KSP    KSPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSP---VKSPKKA 150

[Close]

BLAST of CaUC04G074550 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-50
Identity = 109/147 (74.15%), Postives = 119/147 (80.95%), Query Frame = 0


Query: 6   KAKKGVAGRRGVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLE 65
           K  +G  GR+G G +KK VS+SVKAGLQFPVGRI RYLK GRY+ R G+GAPVYLAAVLE
Sbjct: 9   KPTRGAGGRKG-GDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLE 68

Query: 66  YLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL 125
           YLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLL
Sbjct: 69  YLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLL 128

Query: 126 PKKSERPAAASKEPKSPSKGTKSPKKA 153
           PKKS     AS      +  TKSPKKA
Sbjct: 129 PKKS----TASSSQAEKASATKSPKKA 150

[Close]

BLAST of CaUC04G074550 vs. TAIR 10
Match: AT3G20670.1 (histone H2A 13 )

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-44
Identity = 93/122 (76.23%), Postives = 102/122 (83.61%), Query Frame = 0


Query: 16  GVGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSRRVGTGAPVYLAAVLEYLAAEVLELA 75
           G G  KK  SRS KAGLQFPVGRI R+LKNG+Y+ RVG GAPVYLAAVLEYLAAEVLELA
Sbjct: 9   GSGVAKKSTSRSSKAGLQFPVGRIARFLKNGKYATRVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 76  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSERPAAA 135
           GNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK    A A
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKK----AGA 126

Query: 136 SK 138
           SK
Sbjct: 129 SK 126

The following BLAST results are available for this feature:

BLAST of CaUC04G074550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143711.1	3.3e-69	96.05	histone H2A [Momordica charantia]	[more]
XP_008447608.1	2.1e-68	94.12	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
XP_004142082.1	2.0e-66	94.12	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_038994985.1	5.7e-66	91.45	histone H2A-like [Hibiscus syriacus] >KAE8733755.1 Histone H2A [Hibiscus syriacu...	[more]
XP_039043508.1	9.8e-66	90.79	histone H2A [Hibiscus syriacus] >KAE8664998.1 Histone H2A [Hibiscus syriacus]	[more]

BLAST of CaUC04G074550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	1.2e-66	87.58	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	6.0e-66	86.93	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU65	2.8e-63	83.66	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
A2WQG7	3.4e-61	84.21	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]
Q94E96	3.4e-61	84.21	Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 ...	[more]

BLAST of CaUC04G074550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR43	1.6e-69	96.05	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A5A7U1I6	1.0e-68	94.12	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	1.0e-68	94.12	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A0A0KXF2	9.6e-67	94.12	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A6A3CW06	2.8e-66	91.45	Histone H2A OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000991pilonHSYRG00051 P...	[more]

BLAST of CaUC04G074550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	8.5e-68	87.58	histone H2A 12	[more]
AT5G02560.2	9.8e-64	75.71	histone H2A 12	[more]
AT5G59870.1	2.3e-52	73.86	histone H2A 6	[more]
AT5G27670.1	3.6e-50	74.15	histone H2A 7	[more]
AT3G20670.1	2.3e-44	76.23	histone H2A 13	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 80..94 score: 73.78 coord: 108..126 score: 75.79 coord: 51..66 score: 86.43 coord: 66..79 score: 89.46 coord: 22..44 score: 69.23
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 11..131 e-value: 1.3E-76 score: 270.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 14..128 e-value: 5.39566E-66 score: 194.476
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 20..97 e-value: 5.3E-12 score: 46.2
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 100..132 e-value: 3.6E-18 score: 65.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 10..137 e-value: 6.6E-62 score: 209.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 25..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..152
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..147
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..147
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 30..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G074550.1	CaUC04G074550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity