CaUC04G074110 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC04G074110
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr04: 23227536 .. 23229672 (-)
RNA-Seq ExpressionCaUC04G074110
SyntenyCaUC04G074110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCAACTGTATCACCATTATCTTCTTCCTCTTTCTCCTTGCTACCCCTTCATTTTCTTCTTCTAAAGGTATATTATCTCTTTAATTAGAATTTGAATAATTAATATTATATAATGGGTTATTGTAACTATTTTTTTTCTTTAATTTTTGTAGGTGGATCTGAAAATGGTGGAATGGAGTCTTCTTCTTCTTCATCATCAGAGGTTTATGAAATAGATTATAGAGGACCAGAAACTCACCCATCTCATATTTCTCCACCTGATCACTCCCATGGAAGACCTTGGATTATTCATCATCATCATCAACATCAATTTCAACCCAAACAGTCTTCTCTGAAGCCTGATTCATACATGAAGGTTAAAATTTTCATTTTCATTAATTCCCTTGTTTCTTTTTTCATTTATTAGTTAGGAATGCTTTCTCAAGTTTTGATTTTTTTTTTTTTTTTTTTTTAATTAAAAAGACAACTTTTTATTTTAGGGAACTTGTTTTCCTTGGTTGTCATTTTGTGATATTGAGGGAGATAATTAAATATCATAGCTTTTTTGGGGAGAAAAGAAGTTTGATGTAAGTATGAGAGTAAATAAAAGCGAGAACGTTTTTGCTTTTGTTTTTTAATCCACAAAAGAGTTTGGAAAACTATTCATGTCAAAAACTTTTTTTAATTAAAATTATGTAGAAATTTTGGAAATATGCAATAAGATGTGAGTATGAGTTTTGTTTTTGTTTTTTTTGTTTTTTTTATTTTCTATTTTTTGTTTTATTTTATTTGAAAAAGCATAAGAGTTTGGAAAAATATTCATGGTTTTTGTTTTTTAATTATTCAAAAACTTTTCAAAATTAAAATTGTGTAGAAACTTCGGAAATATGTAATAAGATCAAGCTTGTTTTCCTTTCTGTTTTAACTTTTTTTTTTTTCAAAACATAAATAAGAGTATCATATTACCATTTTTTTACTTCTAAAATGTATAATAAATATTTATTAAAAAATGTATAATAATAAATATCATAAAAAATATATAGCATAAAAGTTTCCAGATATTTAACTTTAAAAACATAGTTTTTCAAGCAAAAATTTCAGAGGACAAAAACAAGAAGAAAAAAAAAAAAAAAAGGAGAGAGAAAGTAAACAATCATGTTTATTATTATTTTTTTAAAATAAAAAACAAGAAATAATTAGCAATCACATTTATGTTTATCTTTACTAAAAAAATTAATCAACTAGATCTTCTAGATGTCAATTTAAACATAACATCACGCATCACGCATCTAGACATGTATATGTTTTTTCACAACCTTGTCCAATTGTTGACCTTAAAAGAGAGTCTTAACTTTAGTGGTTAGTAATTAAAATATTCTACCTCAATAATTAATTGATGTAGTTAATTAATATAACATTTGATGTGAATGGAAACTATATATTTTTATATATAAACTGAGATTTCTTTTGTTTTGTGTCCCTCAATTAAATTTTATAAGTGGGTAAAAAATTGTTTTCTTTTTTATGTGTTAGGTAATAATTATATGTTTAGTTTGTGACTTCATTACACATTACGACCCTTTTTTCTATTTAATTTCTTTTAAGACTAACACGCTTTTGATTTTTTTTTTTTTTTAAATCTAATTCCAAATTTGGAGGAAAAAAAATTAATAGGCTAAATATATGCTATGGCTTCCTAAAAAAAAAGAAAAAGAAAGTGTTGGATGGTTCCAAATTTCTTAAATAATTTTTTTTAGTATAACAAAGGTGTGAAATGAAATGGTTCATATAACATTTTATAATTATTTTCTAAAATATTTAGACATGAGAATATATGACTTAGAGATGCTAATTAGCCTATTCGACATGGTAAGTAGATAAAATGAAACAAGAAAATTTATAGGGAAAAATAGTTATAAACGCAATTTTTATAAATAAAGAGATTAAAAAAAATCAAATGATTATAAGTATCATACATATCATCCAACTTAGTATGTAATCTTGGATAAAAATGATTAGTAATGATTAACTTTTTTGAACATTTGCTTAATTTAATGACTATTTATTTCATAAAATAAAATATTGATTACCTTTAAGTATAATTTTCCAATTATTCTGTTTACTTGTACAGGGAAGTAAAGTGGGTGCATGA

mRNA sequence

ATGGAGATCAACTGTATCACCATTATCTTCTTCCTCTTTCTCCTTGCTACCCCTTCATTTTCTTCTTCTAAAGGTGGATCTGAAAATGGTGGAATGGAGTCTTCTTCTTCTTCATCATCAGAGGTTTATGAAATAGATTATAGAGGACCAGAAACTCACCCATCTCATATTTCTCCACCTGATCACTCCCATGGAAGACCTTGGATTATTCATCATCATCATCAACATCAATTTCAACCCAAACAGTCTTCTCTGAAGCCTGATTCATACATGAAGGGAAGTAAAGTGGGTGCATGA

Coding sequence (CDS)

ATGGAGATCAACTGTATCACCATTATCTTCTTCCTCTTTCTCCTTGCTACCCCTTCATTTTCTTCTTCTAAAGGTGGATCTGAAAATGGTGGAATGGAGTCTTCTTCTTCTTCATCATCAGAGGTTTATGAAATAGATTATAGAGGACCAGAAACTCACCCATCTCATATTTCTCCACCTGATCACTCCCATGGAAGACCTTGGATTATTCATCATCATCATCAACATCAATTTCAACCCAAACAGTCTTCTCTGAAGCCTGATTCATACATGAAGGGAAGTAAAGTGGGTGCATGA

Protein sequence

MEINCITIIFFLFLLATPSFSSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHISPPDHSHGRPWIIHHHHQHQFQPKQSSLKPDSYMKGSKVGA
Homology
BLAST of CaUC04G074110 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28
Identity = 75/99 (75.76%), Postives = 80/99 (80.81%), Query Frame = 0

Query: 1  MEINCITIIFFLFLLATPSFSSSKGGSENGGME-SSSSSSSEVYEIDYRGPETHPSHISP 60
          ME+     +FFLFLLATPS SS KGGSENG M+ SSSSSSSEVYEIDYRGPETH SHISP
Sbjct: 1  MEMISFMTMFFLFLLATPSLSSPKGGSENGEMDFSSSSSSSEVYEIDYRGPETHSSHISP 60

Query: 61 PDHSHGRPWIIHHHHQHQFQPKQSSLKPDSY-MKGSKVG 98
          PDHSHGRPW I+HH QHQ QPKQ   KPD Y +KGSK G
Sbjct: 61 PDHSHGRPW-INHHDQHQLQPKQPPFKPDPYPLKGSKAG 98

BLAST of CaUC04G074110 vs. NCBI nr
Match: XP_022925989.1 (uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothetical protein SDJN02_04312 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 65/102 (63.73%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 1  MEINCITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHI 60
          ME++  T +FF+FLL TPSF   SS +GGSENGGM     SSSEVYEIDYRGPETH SHI
Sbjct: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM----GSSSEVYEIDYRGPETHSSHI 60

Query: 61 SPPDHSHGRPWIIHHHHQHQFQPKQSSLKPDSY-MKGSKVGA 99
          SPP HSHGRPWI+HH H          L P  Y +KGSKVGA
Sbjct: 61 SPPHHSHGRPWIVHHRH---------PLHPPPYPLKGSKVGA 89

BLAST of CaUC04G074110 vs. NCBI nr
Match: KAG6604438.1 (hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-21
Identity = 65/102 (63.73%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 1  MEINCITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHI 60
          ME+   T +FF+FLL TPSF   SS +GGSENGGM     SSSEVYEIDYRGPETH SHI
Sbjct: 1  MEMRFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM----GSSSEVYEIDYRGPETHSSHI 60

Query: 61 SPPDHSHGRPWIIHHHHQHQFQPKQSSLKPDSY-MKGSKVGA 99
          SPP HSHGRPWI+HH H          L P  Y +KGSKVGA
Sbjct: 61 SPPHHSHGRPWIVHHRH---------PLHPPPYPLKGSKVGA 89

BLAST of CaUC04G074110 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 8.1e-21
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 1  MEINCITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHI 60
          ME++  T +FFLFLL TPSF   SSS+GGSENGG+      SS+VYEIDYRGPETH SHI
Sbjct: 1  MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGL-----GSSQVYEIDYRGPETHSSHI 60

Query: 61 SPPDHSHGRPWIIHHHHQHQFQPKQSSLKPDSY-MKGSKVGA 99
          SPP  SHGRPWI+HHHH          L P  Y +KGSKVGA
Sbjct: 61 SPPHPSHGRPWIVHHHH---------PLHPPPYPLKGSKVGA 88

BLAST of CaUC04G074110 vs. NCBI nr
Match: XP_023543089.1 (uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 5.2e-20
Identity = 64/102 (62.75%), Postives = 71/102 (69.61%), Query Frame = 0

Query: 1  MEINCITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHI 60
          ME++    +FFLFLL TPS    SS++GGSENGGM     SSSEVYEIDYRGPETH SHI
Sbjct: 1  MEMSFRITVFFLFLLLTPSLCCCSSNEGGSENGGM----GSSSEVYEIDYRGPETHSSHI 60

Query: 61 SPPDHSHGRPWIIHHHHQHQFQPKQSSLKPDSY-MKGSKVGA 99
          SPP  SHGRPWI+HHHH          L P  Y +KGSKVGA
Sbjct: 61 SPPHPSHGRPWIVHHHH---------PLHPPPYPLKGSKVGA 89

BLAST of CaUC04G074110 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 65/102 (63.73%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 1  MEINCITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHI 60
          ME++  T +FF+FLL TPSF   SS +GGSENGGM     SSSEVYEIDYRGPETH SHI
Sbjct: 1  MEMSFTTTVFFIFLLLTPSFCCCSSYEGGSENGGM----GSSSEVYEIDYRGPETHSSHI 60

Query: 61 SPPDHSHGRPWIIHHHHQHQFQPKQSSLKPDSY-MKGSKVGA 99
          SPP HSHGRPWI+HH H          L P  Y +KGSKVGA
Sbjct: 61 SPPHHSHGRPWIVHHRH---------PLHPPPYPLKGSKVGA 89

BLAST of CaUC04G074110 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-21
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 1  MEINCITIIFFLFLLATPSF---SSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHI 60
          ME++  T +FFLFLL TPSF   SSS+GGSENGG+      SS+VYEIDYRGPETH SHI
Sbjct: 1  MEMSFTTTVFFLFLLLTPSFCCCSSSEGGSENGGL-----GSSQVYEIDYRGPETHSSHI 60

Query: 61 SPPDHSHGRPWIIHHHHQHQFQPKQSSLKPDSY-MKGSKVGA 99
          SPP  SHGRPWI+HHHH          L P  Y +KGSKVGA
Sbjct: 61 SPPHPSHGRPWIVHHHH---------PLHPPPYPLKGSKVGA 88

BLAST of CaUC04G074110 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 63/97 (64.95%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 3   INCITIIFFLFLLATPSFSSSKGGS---ENGGMESSSSSSS-----EVYEIDYRGPETHP 62
           +N +T +FFLFLLATPS +SS+GGS    NGG++   SSSS      VYEIDYRGPETH 
Sbjct: 4   VNFMTTMFFLFLLATPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGPETHS 63

Query: 63  S-HISPPDHSHG-RPWIIHHHHQHQFQPKQ--SSLKP 88
           S HISPPDHSHG RPWIIHHHH    QPKQ  +SL P
Sbjct: 64  SHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNP 100

BLAST of CaUC04G074110 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 69/105 (65.71%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 1  MEINCITII--FFLFL-LATPSFSSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHI 60
          MEI    II  FFLFL LATPS SSSKGGSENG ME     SSEVYEIDYRGPETH SH 
Sbjct: 1  MEITSPIIITFFFLFLILATPSISSSKGGSENGAME----ISSEVYEIDYRGPETHSSHF 60

Query: 61 SPPD-HSHGRPWIIHHHHQHQFQPKQSSLKPDSYMKG---SKVGA 99
          SPPD HSHGRPWIIHH      QPK  SL P    +     KVGA
Sbjct: 61 SPPDHHSHGRPWIIHH------QPKLHSLNPSPNSRKVSCKKVGA 95

BLAST of CaUC04G074110 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 59/90 (65.56%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 3  INCITIIFFLFLL-ATPSFSSSKG-GSENGGMESSSSSSSEVYEIDYRGPETHPS-HISP 62
          +N +T +FFLFLL ATPS SSSKG  SEN    S+      VYEIDYRGPETH S HISP
Sbjct: 4  VNFMTTMFFLFLLAATPSLSSSKGRASEN----SNGGIDDIVYEIDYRGPETHSSHHISP 63

Query: 63 PDHSHG-RPWIIHHHHQHQFQPKQ-SSLKP 88
          PDHSHG RPWIIHHH     QPKQ +SL P
Sbjct: 64 PDHSHGRRPWIIHHHRHQLLQPKQPNSLDP 89

BLAST of CaUC04G074110 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.9e-05
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 6  ITIIFFLFLLATPSFSSSKGGSENGGMESSSSSSSEVYEIDYRGPETHPSHISPPDHSHG 65
          I +I +L L+A P F+           + S  + SEVYEIDYRGPETH S   PP+  HG
Sbjct: 8  IFLIIYL-LIAVPCFA-----------KGSEQTDSEVYEIDYRGPETHNSR-PPPETMHG 62

Query: 66 RPWIIHHH 74
          +P  IHH+
Sbjct: 68 KPPYIHHN 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038881428.14.0e-2875.76uncharacterized protein LOC120072958 [Benincasa hispida][more]
XP_022925989.12.8e-2163.73uncharacterized protein LOC111433241 [Cucurbita moschata] >KAG7034582.1 hypothet... [more]
KAG6604438.13.6e-2163.73hypothetical protein SDJN03_05047, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022979166.18.1e-2162.75uncharacterized protein LOC111478885 [Cucurbita maxima][more]
XP_023543089.15.2e-2062.75uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EDR41.3e-2163.73uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332... [more]
A0A6J1IQ063.9e-2162.75uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885... [more]
A0A5A7U1B92.1e-1964.95Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1CPX61.1e-1865.71uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A0A0KIB61.2e-1465.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G03120.13.9e-0545.59unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC04G074110.1CaUC04G074110.1mRNA