CaUC04G069720 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G069720
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	ribosomal RNA-processing protein 17-like
Location	Ciama_Chr04: 12409670 .. 12426228 (+)
RNA-Seq Expression	CaUC04G069720
Synteny	CaUC04G069720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTTGCCCCATGGCATATTGGGACGTACTCACACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTTAACATAACTCTTGACTGACTGATGTTTCATTATTTTGTAGAGTCACCTGAATCTACATGGGGAAGACAGCTTGTTCCATGCCATACATTGCAAAACCAAAAAACAAGTTGCAAAAGTATGGAAGAAAGAGGATTGCTACATGGATTTTGTGCTGGGGTTGGAACTGAAACACCAGCCGGGATGGTCAGAGGTCGACTTCATCTATAGCCCACTCAACTACAAGCAACACTGGATAATGCTGGTGATAAACGTGAACGTCAGTTGCATCCTCTTGTACGACTCTCTCCCATCATATATCTCATCAAGGGACCTGGTACAGTTTTTGTTGCCACTATGTTACACTCTCCCCTCCCTTAAGGGCTAATTCACTCCTTCCCGTGCTTAGGGTAAGTAGATAAATTACTCCTTTAAGGGTTGATTCTAGGTTTTGAACAATGAGGCCTCACCCTTTCACTGGCCCGAGAGGGGTTAATTTATAGTTGGACTATAAACAGTTTGTTTATTAGAGGGATCAATGATACTTAAAGAGTTAGATATAACTACAGGGTTAAAACGATAATTTGACCTAACTGTAGCTATGAGTAATTTGTGAAGGGTCGATTTATTGTTGATTAGTAAATTTCGTGGACACAAAAATATATCTACAGTGCAAAGAGTGCAACTGGAAGTCTTTAGTGGAGTGACCTACAATTAATGAATATTGATTAATCTAATTAAAGAGTTTAATTGATTAATCTCATATCATTTGAGCTTCTAACTATAGGTCAAAGAGATCCCCTTACTAGCCCATAAATGATTAGTATAAGAATCAAACATTTCGGTTTAATTTGAAATGTTCAAATTAATAAGGGAATTAATTGTATGTGATACAATTAGCATAGTGTATATAGATACATTATAATATAAAGTTCATTTTGAATGAAATTCAAAATTTGTACTTTATATTATAAGAGAGATAAATATTTAAATGAGATTTAATATTAATTATATGAATGAGATTCATATAAAAACTATAGGTTAAAATTAATATGAATGAGATTCATATTAAAACTATAGGTTATGTGAAAGAAGGTTATTTGAATATGATTCAAAGTTAAATTAAATATGAGATATTTATTTAATTAATTAATTAATTTTATTTAACTATATTTATTAAATACGATTTAATAAAATATAATTAAATTACTATTAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATGATTATTGAATAACTCCCACGTAATGAGTAGTTATTCTGTTCCTATCTCTCACAATTATCACGTAAAAGTAAAAAGGGAAGGGGAGGGAGTTAACAAGATCAAAGAACACAGAAAAGTTCTGTAAGATTTTCCTTCTCCAATTCTCTCTTCCACACAAAAGAATTCCCTTGCTAAAATTCAAAGAGAGCTCACATCTCCTCTTTGATTCTTCCAAGAGAATAGCAAGGTAGCCATTGTGGTGGTGTTACAAGAGAAAAAAAGTTGTTTTTTCCGTTGGAGAAGTCATCGGTTCGTGATTTGGAGGAGAAGATTTCCACATTGAAGAAGGTCTTCAAAGGTAGGAAATCTTCTATCCCTTTCTTCTTAAAAAACATGCTAATTAATTGTTGTTTATCCTGTATTTTGTTCTCTATAATTTTGGTTTTCTAAAACAAGTTTAATAGCACAAGATGATCATTCGCTTCCGCTAGGAATTCGATTCCTTCAGAATGCGGTTGCATGATTAAGTACCCCGTTCTGGCTTTACTAATAGATGGTACGTTGACTTCATTTACTCAAAGCACATTCCCAACAAAATGCCCAAAATCATTTGACAAAATCGGAGTTGGTTGTTTTTCATTTACACCAGAAGGACTGCTACCTAAAACAACTAGAGTTGCATGCGGCATATTAACATACGTCTCATCCTCTTGTGTTGTCACATGCTCGTTTAAACAAGTCTCAACCCTAATTCTATTCCCATCCTCTTCTACTCCCACGTTCAATTGCAATAAGTTCGTTATATTGTCATTGATGTTGTTTTATAGTGAGAACCGATGGAAAAATATGATGCTCATTGACATCCACACTGCATAAGCGTCTTTTGTCTCATTGACATAAGTAGAAATTCGGGTACCATTCCCAACCTCTTGATGCCTTTCCTCAAGACTTGCAAATATCTGAGGTCTACTACAATCGTACTCCGAGAGGAGAAATTGAACATCAACATCGTTTATTAAGAATACTAGAGGAGAGTCAATATCCAACTTACATTTCACCCTCATTATAACGTTGGACTCTGTCAGGTGAGTTCATATACTAGATTCACCAAATCTACAAATGTCAATGTGCTTTAAACTAGGATACCCTTCAAACGACCTCCAGTATATTGTTCTTCTGTGTCGTCCCATGTACCACCAAAATGAATGAACGGATACTTCTTATCCATCCTTCAATAAAAACAATACAGAAAATGATCAGTTAGAAAAATACGACTTTGTAAAATACTCTTTACTCAATCCTCGCCTCTCGATGCTTGCTCCTTGATCCTCTCGCCACACGACACACGAGGCTCGATCCTCTCTCTCGATGCTCATTGTTTCATACATTTTCTCTCCCCTCATCCTTGCCCCACTAAGAGCTACTTGCTCGTCGCTCTGGTTATCACAACGACACACTCACTCACAAGTCAGTTCACTCGCTCTTTTTGTTACGTTCCTAGGTCTCACACAATGTCAGAAAATTAAAAAAAAAAAAATTTACATACATAGCACATTGACTCGCTTGAAGTGTGACATTGATCGTAAATGATGATCCAACTGACTTTATAACTTGATTTCTTCCAACACGTTTAGTTCAATAAAATGAGTTTTTTTGTAGGAAAAGTGAGGGAGTGAGTTTCGGCTTTGTTTGTGTTTGTTCTTTGTTAATAAAAAAAATAAAATTACTTCACTTTTCAGACTATAATTTCAAAGAATTGTAAGAATTTTCAGCAAATTCCCCAAATTGTTTATGTTTGTACATGAGCATTAATTACAAAGCTGGAGAAAAGTGGTGCGGGTATGTTTGTATGATCGAGTATATTGCCTGGTAACCATAGAGCTAGCTATCGAGTAATCGAGTGTGCTTTAATTTCTGTCGGGCACGTATAATGAGCTTATCGAGTAAACGCGTAAATGGTTGTAAGGGGTAAATCCAAATTTTTACATATGACTAACTTAAGCAGAAGATCACTTTTCATTCTTTTTTCAAAACTAGACCAAAAATAGTTGGGCCTCCAAGAGAGGAGGCCATCCGTTAATAAAAACCCAAACTAGTGGCGTGTGGGTTTATTAAGAATTTAGAGATTGGGAGGCGGCGGTAAACTCAAGTTTGCTATTCTCTCTTTCACGAGAGTATTACAGTTACAGGGCGGTGCCATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGTTTTCCTTCGAACTAAGCATGAAGTTGATTAATGGGTTAATTTGGACTTTTGTTTGATTTCGATTTCTTCTATCTGTTTTCCTCATGTGGTTAATTGTTGTTTTTCTTAGGGATTATGTCACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGGTTTGGAAACCTTTTCTATTTTTGGGAACGAATTGCTGAAAACATAGCTACAGTGAGAGTTTCGGACTTGCCTGTCAATAATACGATTTTTCTAGCATTCAATGAGCTTAGGACAGCGCATGAAGGAATTTTTTTCCGGTAGATTGTTGATTTCCCAACAGAACTGCAGAACCATTTGGGTTCTCAGAAGGTAGAAAGAGAACCAGAAACCATTACTTTGATGAAATGTTAAAATTTCCTGCGGACTCTGGAGATAAGGCTGGCTGTAATCTAGAGATGCCATTGCTGTTCTTCCACCTTGGATTTATCCAAGGTTATATGATTTTTTTTTTTTTTTTTTCAATCCTTAGTTCCAGAGGGCTGTTAGGTTTCAGACCTGCAAATATCAAACCTAACAAAGAATCCCCCAAACCAAACAGAGATATCTTCTCTTTTTTGTCAGCCTAAACGAGATCAAAACACAAATTTCTCAGAATGAAAACATAACAAGTACAATAACCAAAAGTGTTTCCTAGGTTATACCACTTGTCCTCTTTGAAAGACTGTTTCGTGTCGGACGTGTTGGTTTGGTTGGAGAATTCTGTTTCCTTCTCCTTTTGCTTCCGCCAGGCATTGTCCAATAGGGAAACAACAGAGGTGGTCTCTCTTCTTTCCTCGATTGAGAGTTTTGACTTTAGAGTGGGGAGAAAGGATGTTTGTGTTTGGAGTCCTGATTCGGTGGGGGGCTTTTCTTGTAAGTCGTTCTTTAGGATTCTTGTGAATCCTTCTCCTATAGTCGAGTCAGTCTTTGATGTTTTATGGAGGATTAAGATTCCTAAGAAAGTCAAATTCTTTGTCTGGCTAGTGTTGTGTTGCTTGGTCGTGTGAATACGGTGGATAAGATTTTGAGAAAGATGCTTTCGTTAATAGGTCCTTTTTGTTGCATTCCTTGTCGAAAGGTGGAGGAAAATTTGGATCAACTTCTCTGGGAATGCCAATATGCGAGATCTGTTTGGATCTTTTTCTTGCAGGAGTTTGATTTCTCGTTCGTTGGCAGAGGGACATTCGGTTGCTGATCAAGGAGATCCTTCTCCATCCGCCCTTCAAAGAGAAAGGGTGTTTTCTTTGGCTTGTAGGGGCCTGTGCTTTGTTGTGAGATTTGTGGGGTGAGAGAAACAATAGAGTGTTTAGAGGTATGGAGAAGAACCCTAGTGAGATTTGGTCTTTCGTGAGATTTCATGTTTCTCTTTGGGCTTCGATATTGAAGTCTTTTTGTAATTACACTCTAGGCAATATCTTACCTAGTTCGAAGCGCTTTCTTTAGTGGTGGGTTTTTTGTGGGTTGTTTTTCTTTTTTTCTTTTTTCTTTTTTTTATTTTTTATGCCATTGTATTCTTTCCTTTTTTTTCGCAATGAAAGCAGTTGTTTGTATATAAAAAGAAGAAAAATAACCAAAAGTGAAAGATAACTCCCCAGCACAATTCGAGACAGTTGGAATTCCCTCCTTCAACCTTCAACTTCAGAATCACCAAGTTTTCCCTCCCTTCTACAAGACCCCCAAAGCCTCTCTTAGACCTCCATGGTGGTCCCTTGGTGGTCCCCATCCTCTAATCGAATTCGTTCCACGTCCCACTTTCTTTTCCCCCTTGTAGAACTCCCTTCTTACCTTTGTGATAATAAGTTTAACGAATTGAGGGTCTCACAAGGTCACATCGGGTATTTAGGAGATTTCAGTTGTCTCTCTTTCCTGGAGCTACAGGGAATGATTTTTGAACTTAGTTGTACATTCATCAAGACGACAAAGTTAGAAGGTGTGCTTCTGTAACTTCTTTTTTAAAAATAGTAAGTCGAGCTTCAATTAGAAAAAAAGTTGAAAGAATGTATAACGACATACATTGGTACAAGAAATAGCACCAATCCAAAAGAATGAAACCCAACTTAAAATTACAAAAAGCCTTAACCATGGAAGCTCATTACGAAGCATTGGACCTAATAAGCTCTCACAACTCATGACCTTACTTGAACAATATTTGTTCTATAGGTTGTACAACTGTGCCCTTGAGTTCTAAAGAAAATAACCTCCTGCAACTCCCTCTCAGATCTCTCAACACCTTCAAAAAGTCTACCATTCCTCTCAAGCCATATTCCCTAAAGAATGACGAAGAAAGATGCTTGCCAAAGAATTTAACCCATCTCCTTGTAAGGCAGAAACAACAAAAACTCCTCCATCAAAGCCCTTCAATCCCAATTTGTTTCTTCACTTAAGCTCTGAGAAAAATGTTACGGCTTTAAGATTATGGTCATACTACTGCAAATGATGCAAATGATGGTAAGGGAGGGTGAGGCGAAGGCGATTTAAGTTGTGAGAACTTGCCTTAAAGCTTTTTTGTTTCTGTTAATTTTGGGGAAAATTGCAAAAACCACCCCTGAACAATGAGGTTGGTTATAATCACACCCATGAACTTTCAATTTGATCAATCATCCTCTTGGAGTTTCTTAATGGTTGCAATCAACTCCTTTTATTAAATTAATTTTTATTTATAATTTCTTCTTCCTCTCTTTGGTTCTCTCTCCTCTCTTTTCATCATCTTTCATTCTCAACTCTAAAAGTGAAGCCTTAGTTTCATGGACCCATTGCTCTCCAAGAAATCAGGGGATATCTTAACCCTCTTCTCTCCGTTCACACCCACATTTGATGTTGTACCATTGGTAGCTATTTCTATGTTAAAACGAAGACGTTCTCTAGAAAATTGGGTGGTTCATTTTGGAATGAAAAAGGGTTTAACTTAGTAGATGAAAACCCTTCACCTTGATTCCTCTTTGCCTTAGTGTACAGAGAAGGCAATCAGAGCACTGCGCTTAAAGGTGAAGCAACCATAGTCCCGACCCTTTTGCTGACTGAAGAAAGCTGAAATTCTTTGAATTGGGATTATTGGTAAGTTTCGTTTTACTTTTTCTCTATTTTCATTTGTTGCATTGCAGCAATTCTTAGAAATTTAGCAATCTTCTTGTGTTGAATTTGTGTACGAAACTGATTCGTCGGTTCACCAAATTCTATTTGGATGGCTAAATAATTCAAAAACTTAAGCTGGGCAAGATTTTTCGATCGAAGTTATAGAATTTTTGCTCCAAAGTTTTCTCATTTTTCCCAATCGCTCAATTGATGGGCATAATACTGTGGTAATGTGACAGAGAGAGATGAGACATTCTAACAGTAAATCTCTATAGCTAGAGGAGAGACAACAGATGAGAATAACAGAGGATGAAAAGGGAGAAGAGAGAACAAAAGAGAGGAAGGAGAAACTACAAATATCCAAAAAAAAGAAAAAGATTAAATTAATAAATGGGGTTGATTGCAACCATTAAGAACCACAAGGGCATAATTGATCAAATTGAAAGCTCATGGGTGTAATTGTTAGCAACCTCATAGTTCAGGAGTGGTTTTTGCAATTTTTCCTTAATTTTAATAGTGAATTCCCCCAAGATTTTTTTTTTGTTTATTTATTTTTTTAAAATTTCTTTTCTTGATTTTTCCCTTTTATTTTGTGGGAGGGAGCTCGATAAGAAACCCATCAACTGTCATGACAAGCTTCAAAAGAATGCCTTACATGGTTTCGTCTCCTTGTTGTGCTCTATTTGCAAACAATTAGAATCACAAAGTCACCTTATGATATCTTGTACATACGCCAGCTCCTTTTGGAACCACCTTACATGGTTTTGTCTCCTCATTTGTGCTCTATTTGCAAACAACAATTAAAATCACAAAATCACCTTACTTGTACGTACACTAGCTTCTTTCGGAACCATCTCCTTTCAACATTTAGTTAGAACATGACTCTCCTGGAAGATCCTGAATCTCTCCTATCCCATGCCTTTGGAGGGCACCTTTTCCAAAAGGAAAATAAGCTTCTTTGGAAAAGTTTCATTACAGCATTCTGTTGGAACATTTGACTCCAAGAAAGGAATAGAAGAATCTTCCATGAAAAAGGGCTCTCTTGTTATAGATTTTGTGATGCTATCTTTAACCCCGTTGTGACTTAGTGTAAATGCTCCCCTTATTCTATCACTATACCTATACATCTATACTAGTGTATAACCTGGAAAGCCTTCTGGAATGATATTGTATTGGGGCTTACCCTCTTCTTTTGTAATTTCATACATCGATCAAATTGTTTCTGATAAAAAAATAAAAAAAAAAAAAGGAAAAAGAAAAAGAAAAAGATTGTATATATAATAATCTGTTAGGGTGAGTAGATTGTTGAGTTTTTGGCAAAATATTAGAAGTGCAGTTGTCTCACATTGGAAAAGCTCAAGGAAGTGATGAGCTCCATGCACTATAAAAGGATCTTATGCCTTTGGTTTTAAGTCGTCCTAGTTAGAAACACTTTAAGTTTTGGTGTGCTATAACTCTAGTTAAATTTCCTTTCATATCTGAGAGTGGATTAAAGAGTGTGATTGATACAAAAGTTTTGAGAGAGTACTCTTGTAATTGGATTGAGAGAGAATTATTCTGTGTGATAGTAATAATTTTTCATATAATGGATTTTATTTGGTCCGTGGTTTTTTCTCCGGTTTGGAGTTTTTCCATGTTAATTTTTGTGTTTCTAGTTTTATTGTTTTCTTTTAATTTCTCTGTTATTTTTCTGCTTATTCTTGCTAGTGGGAGATTTTTCTCCAACACATATATCTAATCATCCTTAAAAATGCTACAAATTAGTCATATTGTATGTATTGTATTATATGAAGACTTTTATTGGACAAGTTGTGTAAAATTTTATTGATTAGTGGAAACAAGGAAGAGAACAGCCTGTGCATATATCTTTTTCTTCTATATTATTGGGATATGTTCTCAAGAGTCAAAGTCCTAAATTATTATCTTGCAGAGAAAATTAGAAAAAGATCTGGTGCTATATGGTGGTGTTCTACCAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACCACTTTCTGGTACTTTACTGACGATTGCATATTAAAATATTAAGTGCGTTTGATAAGCCATTTGCACCAGCTTGCTTAGACCACAGATCTGTTCAATCAATTTTAATGACATATTAATTACAAGTTCTTCTCCAATACAAGTGTAAAAACAAAGTATCCATCTAAAAAAATCAGATCAGATATTATTTATGTTCATAGGGAAGCTAAAAGTCAGGTTTATATGAAAAATAAGTGGGAAGTTGATAAAATTGATAATGATATGCATTCTTTTAGAAGAACAAGAATCTTCATTTCTATATACTCCGGAACTTGGAACAGTATTTTGATAATTTATTACTGGAAGTGTCATTTATGTTCCAGAGCAGATAAATGTTGCCTAATTTTGATCCAAACATACTTTTGTTTTCCTCTGTAGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAAGTAAGAGAGACAAAAAGAAAGGAAGGAAAAAGAAATAGGTAATTATACTAAGCTATTTATTCACTCTTTACTGAATGTCCGATGTGACGTGATTTATATGTTGTCCCATGAGAATATGGAGTGATCTTGCATTGGCTAGGGAATTTGAGGGTCTTGTATTACTCTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCCTTTTATGAGAAGCTGAAATCATTCATTCAGAACTCCGAGAAGAAAAAATAACATATTATCCAAGTATCGAAAAATCCTCGTATTACGTTACTGAAAAGGATGTACATGTCTGATGATGGATATATCTTTGGAATGCCAAATTAGTTCGGTTTGGCCTTAGTTATTATTGGCAATTTGCTGAAGATATAGGGGTTGAAATCTAATTTCGTTATTCCAAGTGTGTGAAAATGAGATTCTTCATCCTCCTTCCTCAGTGCCTAAGAAATTTTCATCTGTTGTCTTGAGTTTCAAGAAATTCCTTCAACAAATTCATCTGAAAACGGCGTGTGGGGTTCTTGAGAGCTTGATTTTTTTGGTGCGTGGTTCTTTATACTCCCTTAGGTGTTTTGTTCATGGTTCTTCTGAGCTCCGCCGGTTGGTTGGTGGTGCCCCCTTAAATGTTTTTAGTGTGGTTTTCAGTGTATTGTTTTTGGTTTGTGTGGTTGGCTCAGGCTCTCTCACCCTAGCTTCATCTTGCCAAAGATTTGCATCTCTATCTAACGCTCTTTGATCTTCCTCCGATTTCTCCCTTTCTTTTTCCACTACCGCTTTTCGAAATGCAACGTTTGTGACGTTTTAAGTCGTTGTTTTGGTTTTGGTGGATGTGTCTTGTCTAATTTGTGTTTGGCGATTCAACTTAGGTGTCGATGTCCTGTTTTTGTTGTTTCTTTGTATTTTTCTGTTTTTGCCGTAAGTTTTGGTTCTTGTTTCTGTTGCATAACATAATTTCGATTTTGGTGGAATTATTTTCGTCTTCTTTGAATTCGGGCTTTGGAAGTGTTATTGGAGAATCATGGATCATTTTCTAGTGTGGTGATTGAATTAGAATTTTCGGTTTCTTTGATTTCTTTGTTTGGAGTGTTTTAATTATTATTATTATTATTATTTTTATTTGGTTATGGTTACTCTAAGTGTCTTGTTGTAATGTGTAATCATTCAAAATTTCAATTTCACGACATCCATTAAAGAAGATATTTGAGAATAATAAGAACCACTATTATAGTTTTATTTCAAACAAAAATAATTAAACATCAGGTTAATGGAGTGGTCATTTGATTCAAGAGAACATGAAAATAATTCATTGTTTGATGTGAAAAAAGGGGAAAACGAGCTGAGTGTTTAGAGCGGGAGCAAATTGCAGAACTTCTTAGGTTTTGTTGATGTCTTTATTATGTAGTTTGTGTTTCAATAGAGAATATCTATTTGAGTATTTGTAATGATATAAACATTTCTAGATTGAATCAGATGTATGGTTTGAAATTTCTCTTGATATTTATTTTTCTTACATAGCGTATCAATCACACATATACAAATTTAATAATAAAACAAATGAAAAACTAAACTAATAAAAAAATATAGGTTTTATTTGGTAACCATTTGATTTTGATTTTTGTTTTTTTGAAAATTAACCTTATATATCTTACTTCTACAGACAGGTAAAAATGGTTTTCCAAAAATAGATTTTGTTTTAGAATTTGATTAAGAATTTACATTTTTTTTTTTTTTTAAAAAGGTGAAAACTATAATTGAAAAATTAGAAAGAAACAAGCATGCATTTTAAACATAAAAAAAGGTGAAATCATTACCAAACTGAAGTAATTTCTCAAATAGAAAATATCTTTTTTAGTTATTTGGTACTTCTGAAATCATTTTTTTTTGGAGTCAAACCTAATAATTCAAAATTACTTGTAAAAGTAGGGATGGCAAAAAAACCTGCAGAGCTTCGACTCGATCGGGTTGGGGAATCTCCGGTTTGATCGGGGACGGGGGTCAAACCAGGGTCATTACCCGGGTACTCGTCCGGGGACGGGGCGGGCCGTCCTAGACCCCGACCCCAACTCCAATTAATCCCCGACCCCGTGAGTTAATTTCTCTCTTTCTGTCTCGCTCTCTCTCTCTCTCCTAGTATCGCTCTCAGTCTCGCTCTTTCTCTCAGACTCTCTCAGTCTCGCTCTCTCTCAGACTCTCTCTCAGACTCTCTTTTCGTCTCGCTCTCTCCTTTCTCTCTCAGTGTCGCACTCTCGCACTCTCGCTCTCTCTCAACTCGTGTGGTTAGACAAACACAAACACAAAAAATGGTCAATGAAGATAAAAAAATGTTTTTTTTTTCTTTTAAAAGAGAAGTTTGTCATGTAGCAACTTGTGATTGGACACTTGAATGAGCTGCACAAAAGTGGTGCAACTTGGTATGCACTCGATCATTATTTTTAATTAAAATGTCTCATATAATATGAGAAAGGAAAGAATCAAACTCCACTCAAGACACTCCATTCTCTGCGACTGATTGGTGTACAACAACGACAAGCTCCCTTATTGTCTTCATCATCTCTTGACCTTCCTCAATGCCATAAGCTTTCTCGTTGCATTTTCAATAGTTGTTGCCATTACAAACTTGTCTTGATGAGCCCATTCCCTTATGAGTAGACCTACTCAGAGCACCTCTATCATCAGCAGAGTGCATCGACAACGTCGCCATCGAAAACCCCATGGTTATGGTCTCTAATGCAACATGAGAGAGGGCGTCGCGATTCATCTCCCTGCCAATCAAATAAATTTATAAAACTCTGACCGATACTGCCTATACTACTTACTAGTACAAGTGGCAAGATAGAGTCGTCTCCTTAGGGAACTTACGATGATTTTAGTTTATTCTTGGATTTAGAGTTGTCACTGGGGGGTTTGTGTGTTGTGTTTGTAGGGAATGTAAAGATTTGAATTTAGAGTGCATAAAAGTAAAGCATGAATTGAAATGAACTTAATTTGATTAAAAGATCCAGCCTAGGGATTCAAAATCCATCTGTTCACTTGGCCAATCATGGAACTTCTAAAAACATGCAATACTCGTCAATTTAATTTTTAACCCATGTACTCAAGAAAACCAAAGATATATGCCCTAATGTGTTGATTAATTTCTTAAACAACATGGATGCTCAACTAATTGGGTTCAATAGTGTCATATTAATTAAACACCCACATTAAAAAAGGTAGTCAAGCTAAGTCGATGAATAACCTAGATAGCCTAAGTTACCATCGATTCATTTTTTAATCGGTTAATCATGCAATATGTTGTGAGAGGATTGTTCTAAACCACCTAAAATCCACACCCAAGCATGCTTTAACCCCCTTTGCCCTTAAGATGATGAAATACGCAGATTGTACACAAGCATTCAATGAATCAATGAGAGATGACCAACAACTCATAAATTCAAAGCATAAACATTAATATTTCACTCAATAATAGTACCATATCAACAAACATACATTAACGAACAAAAATCCAAGTCTCACAACCAAATGAAATGGGTTTCAATCCAACCTAAGCTAGAAATTACTTACCTTCTACTCATAATGTGCTAAGAGGAAGTCAATGTTGAAATAAAAGAAAAATACAAAGTAGTAAATGTTGGGAGTGAAGAAATACAGAGAAAACCAAGTTGGAGGCGCTCAAATCGAAGCTGATATGACCTAAATCAAGCAAAAACATATTTATAAACAGGGGTTGGTGTTGTGACACCTAGGGTTAGCGTTGCGGTGTTGGCACCCTTTTGCCAAGTGCCAAGTGGGTGCTGTGGCGCTCATCGCGCACGCGTCTCATCATGCATCTGTCAAAGTTTGGGTACTAGCATCCTTTTTCTTCTCTCTCTTCATGGTTGATTCTTCGGAGCTCTGTTTTGGTTTGTTTTAGTCTCGTTTCAGCTCCAATGGTCAATTCTACCTCTTAGTTGCTCAATACCTATAAAATCATGGGATAAACGTGTTAAATCATGAAACGAGCCTGAATTAAGTTAAGAAAAATAGCACATGCACTCCATGCACAAATTCCACCTGCAATGACTCACTAACCCTTCCGTTGAACCCTGGCTTAGAATGGCCAATTGTGGCACCTAATCTTGGACCACCAACCCTCTCCCTTCCATTTCCACTCGTTTCTCGAAGGCCTTTGGTAGCTCTGATTTTCTAACTTCTCTATCGAAGGCGTCTCCTTTGTCTAGATCTCTTAACACCTAGACGAACTTTTGTCCACTTCTTTCCAATCCATCTACAATGAAAAATTACTTGTCCTTACAAATGTACCTAGTAGCACCATCATCAATGAATAGATCAAATCCTAGCAGAAGCATTTGATCGCCTTTCACTTTGATTTTCTTTTATGTAAAATTGAAAAAATAAAACTAAACCTAAATTACAAAACACAACATGCTGCAATTTAACTATATAATAATGTATTCACATACATTATATTTTATATTAATTGTATTTGATACAATAAATATATTCTTCCCCAAATTAATTTGAACATTTCAAATTATTCTTTCAATACCATGGTCCTTGTTTATTTGTTGTGAGCTAGCAAAGAGACCTTATGAATCTACAGATTATAAGATTGGATATTAATGAATTAAACCTTTTAATTAATTAACCTCCATTTATTAATATGAGGCAAACCACTATAGACCCTTAGTCACACTCTTATGCATTATAGGACGTGTTGCATCCATGGGTATAATCATTACACGTAAGTCAATCCTTCACGAGTTATTCATAATTACAGCTGGGTCAAATATTTGTTTTACCCCTATAATTACCTTTGTGTTCTTAAGTACCACTAATCCTCTAATGAACAATTTGTTTATGATCAAACCATAAACCAAGTCTTTCTCGAGCCAAATGAGAGAGTGGGGCCCCATTGTTCAAGTCTTGGAGCAAGCACTTAAGGGAACTACTCATCTACTCACTCTATACGAGAGGGTGTGAATTTCATCTTGTGAAATTACATTCCCAACTCCCTATTCGATCAAGTTCCCAAAATGGTAGACTTATTGAGTCAACAGATTGAGCCACTCTCACTCATATACATCAAAGGACAATCCTTCATAGGCAGAAGTTCATAACTCACCCGAGATTAATGTCGAGTTACATATGATCACCCAAGATTAGGGTTGTATCCATAGTGCACCAGGATGAGCCACCCGACCTTATCCATATACTATAGACCCTTTAGGTTATTATTTAAACACGATCCACTTGTAAGTCAACCACATACTGTTTAAGAAAATAGTGGGATAACGGTAGAGATTGTTGATGAAGGTTATTAATACTTTGCTAATCACTTAATTTCAAGAAATGTTATTAAGGGTTAAGTAAAAGAAAAGATTGTTTCCAAAATATTCAATATGGAAAGACTTCACTGCAACAAAATTAGGCTATAATGTTAGTCGAAAATCGACATTATAGGGTTATGATGTCGATCAAGCGACCGACATTGAAAAATGTGTTATTAAAGGTGTTCAATGTCAGTTACATTTAATGTCGACTTTTGCCTGACATTATAGATGACTTTAATGTCGGTTGTTGACTGACATTATAGGTGACCGATATTGAACACCTTCAATAACATCATCTTCAATGTTGGTTATTTGACAGACATTAAATGAATTTGCCTATCATTAAATATTAATTTTTTGTGACAAGCAATGTCCCTCATAGTTACTTTATTAAAAAATTAAAAAAAAATTATTGGTTATGTATGTAGCTAACTAACAAAACTAATATTTCTATCATATGATAAAAGTAATATGATATTTGTATATAGTACAACTCAACTTTCAAGAAACACAATAATTAACTAATTCACTTCAACAATATAGATTAACAAAATTGCTAACTATAATAAATACAAGACTCTAAAACCGTAAAATTTAAATTACATGCCGACTCTCAATAATTTTGTCTTTTTGAGCGTTAAATACTTCGTGATGCCTAATCATCAGTTTCACCATATAATTTTTGAAGCAAGAACCTACCAACAAAATTTCTCAAGTTTTCAGCAAAAATAAAAAATCAAAAGCTCAATAAAATATCTTCACATCATAAATTACTAATTAACTATAGTAGATGTTTACTAAGATATTTAGTATCTAAGATAATATAAGAGCTATGATTTTGCATTCATTGACATCCCCAACCAAATTTCTAAAGTTTAGGAACAAGAGATTAGGTTTTCTAGCCATGGAAAAAAGAGTTGAGGCATTAAGCTACCCAAAAATATGACAGTCGTAAAGATATCAAATGAAATCAAACCTTAATGCATAGCAAAAAGGACTTAAATCCTAATCAAAAAGGAGAAAAACCATAATGTATAGTCATACCAAAAGGACAACCAAGCACAAAATATAAATTCAAACAACCATAAAACTTATAAGTCTTAGATCCTTCACAGCATGAAGACTTTCCAAAGCTATTGGTAATAGTACTATTAGATTGACTAATATTAACAACACAATACATGAAATAATCAGTGTATAATATCTAAATATCTGAAAATCCAATTCATAAGGATATAATTTTTCTAACATAAGATATGTAGGATTCTAAATATCTGAACATAAACAATAAAATTAAAGTAGATTTAACTTATAAACATGTAAACGGCTATAAGTATAAATATTGTGTAGTTATAGCAACACATATACGAGACGATTAAAGTGACTCCAAACATAACGCCGATGCAAATGCCAGAGTTCCACCAATTAAAAAACGACATATTTTTCTTTCTTTCTTCAGGGTGGTCATCGTCGAACTGGTCCACATCGTGTAGAGAATCACACCAGCGCTCCACATATAGAAATTTCGATCAAATTCGGATCCTCTCAAAACCTCCGACATTCCAATGCCGAACATAAATCCTCTCAAAACCTCCAGCGAGATGGAGTAAAGCTCGCGTGTGAACATATTTGGTACGAAGCTGGTGTGGACAACCTCTACGACGACAAACAGACCTGGTACGAAGCTGGACCTAGGATCTGGAAGGACGAAGGAGAAGATGAAGATGATGGGCTTCTTGTTAGAGAAAAAAAATGTGGAGGACAAATATGA

mRNA sequence

ATGACGTTGCCCCATGGCATATTGGGACAGTCACCTGAATCTACATGGGGAAGACAGCTTGTTCCATGCCATACATTGCAAAACCAAAAAACAAGTTGCAAAAGTATGGAAGAAAGAGGATTGCTACATGGATTTTGTGCTGGGGTTGGAACTGAAACACCAGCCGGGATGTTACAGGGCGGTGCCATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGGATTATGTCACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGCATTCAATGAGCTTAGGACAGCGCATGAAGGAATTTTTTTCCGGTAGATTGTTGATTTCCCAACAGAACTGCAGAACCATTTGGGTTCTCAGAAGAGAAGGCAATCAGAGCACTGCGCTTAAAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACCACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAATGTGTGAAAATGAGATTCTTCATCCTCCTTCCTCAGTGCCTAAGAAATTTTCATCTGTTGTCTTGAGTTTCAAGAAATTCCTTCAACAAATTCATCTGAAAACGGCGTGTGGGGTTCTTGAGAGCTTGATTTTTTTGGTGCGTGGTTCTTTATACTCCCTTAGGTGTTTTGTTCATGGTTCTTCTGAGCTCCGCCGGTTGGGTGGTCATCGTCGAACTGGTCCACATCGTGTAGAGAATCACACCAGCGCTCCACATATAGAAATTTCGATCAAATTCGGATCCTCTCAAAACCTCCGACATTCCAATGCCGAACATAAATCCTCTCAAAACCTCCAGCGAGATGGAGTAAAGCTCGCGTGTGAACATATTTGGTACGAAGCTGGTGTGGACAACCTCTACGACGACAAACAGACCTGGTACGAAGCTGGACCTAGGATCTGGAAGGACGAAGGAGAAGATGAAGATGATGGGCTTCTTGTTAGAGAAAAAAAATGTGGAGGACAAATATGA

Coding sequence (CDS)

ATGACGTTGCCCCATGGCATATTGGGACAGTCACCTGAATCTACATGGGGAAGACAGCTTGTTCCATGCCATACATTGCAAAACCAAAAAACAAGTTGCAAAAGTATGGAAGAAAGAGGATTGCTACATGGATTTTGTGCTGGGGTTGGAACTGAAACACCAGCCGGGATGTTACAGGGCGGTGCCATGGTGAAGAATGACGGAGAAGAAGGGGGCGAGATCGCACAGCCTCATGCTCGACACATAAAGAAGAGAGCTCTCAGGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTAAGGGATTATGTCACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCAGAGAAGCAACAAGAGGAAGCTATGCGGCGGAAGCGCATCGAAGCACGCAAAAAGCATTCAATGAGCTTAGGACAGCGCATGAAGGAATTTTTTTCCGGTAGATTGTTGATTTCCCAACAGAACTGCAGAACCATTTGGGTTCTCAGAAGAGAAGGCAATCAGAGCACTGCGCTTAAAGCTGACCGACCGGTTGATGAACAGAATGAGGATCATGAGGATGAGGATGACGAAGAGGAAGAGAAGCCATTGGCACCACTTTCTGAGACAACAATGTATGACAGCGGGAATATCAAAATCACTGTGACAACAAGTGAGGTATCTCGAGAAGAAGAAATCGATCTCATTGAGAAGCCACAGACAGCAACAACCCAATTGTTTGCAAAGGATAAGAAGCATAACCTGCCAATTGCCAAAAAGAAGCCATTCAAGAAAGTTTCAAAGCAGAGGTCAAGGCCAAAGCCTCAAATGTGTGAAAATGAGATTCTTCATCCTCCTTCCTCAGTGCCTAAGAAATTTTCATCTGTTGTCTTGAGTTTCAAGAAATTCCTTCAACAAATTCATCTGAAAACGGCGTGTGGGGTTCTTGAGAGCTTGATTTTTTTGGTGCGTGGTTCTTTATACTCCCTTAGGTGTTTTGTTCATGGTTCTTCTGAGCTCCGCCGGTTGGGTGGTCATCGTCGAACTGGTCCACATCGTGTAGAGAATCACACCAGCGCTCCACATATAGAAATTTCGATCAAATTCGGATCCTCTCAAAACCTCCGACATTCCAATGCCGAACATAAATCCTCTCAAAACCTCCAGCGAGATGGAGTAAAGCTCGCGTGTGAACATATTTGGTACGAAGCTGGTGTGGACAACCTCTACGACGACAAACAGACCTGGTACGAAGCTGGACCTAGGATCTGGAAGGACGAAGGAGAAGATGAAGATGATGGGCTTCTTGTTAGAGAAAAAAAATGTGGAGGACAAATATGA

Protein sequence

MTLPHGILGQSPESTWGRQLVPCHTLQNQKTSCKSMEERGLLHGFCAGVGTETPAGMLQGGAMVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRPVDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQMCENEILHPPSSVPKKFSSVVLSFKKFLQQIHLKTACGVLESLIFLVRGSLYSLRCFVHGSSELRRLGGHRRTGPHRVENHTSAPHIEISIKFGSSQNLRHSNAEHKSSQNLQRDGVKLACEHIWYEAGVDNLYDDKQTWYEAGPRIWKDEGEDEDDGLLVREKKCGGQI

Homology

[Close]

BLAST of CaUC04G069720 vs. NCBI nr
Match: XP_038881021.1 (nucleolar protein 12 [Benincasa hispida])

HSP 1 Score: 268.9 bits (686), Expect = 8.0e-68
Identity = 153/215 (71.16%), Postives = 173/215 (80.47%), Query Frame = 0


Query: 58  LQGGAMVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRK 117
           L+GGAMV+NDGEEG E+AQPHARHIKKRALRNKALSVSFNEKDLRD+VTGFHKRKKKRRK
Sbjct: 4   LRGGAMVRNDGEEGAELAQPHARHIKKRALRNKALSVSFNEKDLRDFVTGFHKRKKKRRK 63

Query: 118 EAEKQQEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTAL 177
           EA+KQQEEA+RRKRIEARKK  +   ++    + G                        L
Sbjct: 64  EAKKQQEEAIRRKRIEARKKRRL---EKDLVLYGG-----------------------VL 123

Query: 178 KADRPVDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKP 237
            ADRPVDE+N+DHE+ +++EEEKPLAP SETT YDSGNIK+TV TSEVSREEEID I+KP
Sbjct: 124 PADRPVDEENDDHEEGEEDEEEKPLAPFSETTTYDSGNIKVTVITSEVSREEEIDPIDKP 183

Query: 238 QTATTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           QTATTQLFAKDKKHNLP+ KKKPFKKV+KQRSRPK
Sbjct: 184 QTATTQLFAKDKKHNLPVTKKKPFKKVAKQRSRPK 192

[Close]

BLAST of CaUC04G069720 vs. NCBI nr
Match: XP_022142095.1 (ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 ribosomal RNA-processing protein 17-like [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 1.4e-59
Identity = 144/212 (67.92%), Postives = 159/212 (75.00%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKNDG+EGGE+AQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           QEEA RRKRIE RKK      ++    + G                        L ADRP
Sbjct: 61  QEEAKRRKRIELRKKRK---EEKELVLYGG-----------------------ILPADRP 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VDEQN+DHE    EEEEKP AP+SETT YDSGNIK+TV TSEVSR+ EI  I+K QTATT
Sbjct: 121 VDEQNDDHE----EEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATT 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQ 275
           QL AKDKKHNLPI KKKPFKKV+KQ+SRPKP+
Sbjct: 181 QLVAKDKKHNLPITKKKPFKKVAKQKSRPKPR 182

[Close]

BLAST of CaUC04G069720 vs. NCBI nr
Match: XP_022926799.1 (ribosomal RNA-processing protein 17 [Cucurbita moschata])

HSP 1 Score: 239.2 bits (609), Expect = 6.8e-59
Identity = 138/210 (65.71%), Postives = 159/210 (75.71%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           QEEA RRKRIE RKK  +     +                              L ADRP
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVL--------------------------HGGVLPADRP 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VDEQN+D +D D++EEEKPLAP+SETTMYDSGNIK+TVTTSEV R+EEID I+KPQ +T+
Sbjct: 121 VDEQNDDLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTS 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           QL AKDKKH+LPI KKKPFKKV++++SR K
Sbjct: 181 QLLAKDKKHSLPITKKKPFKKVARKKSRSK 184

[Close]

BLAST of CaUC04G069720 vs. NCBI nr
Match: XP_023517913.1 (ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 1.5e-58
Identity = 140/210 (66.67%), Postives = 161/210 (76.67%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           QEEA RRKRIE RKK  +      KE                 VL         L ADRP
Sbjct: 61  QEEAKRRKRIEERKKRKIE-----KEL----------------VL-----HGGVLPADRP 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VDEQN+D +D D++EEEKPLAP+SETT YDSGNIK+TVTTSEV R+EEID I+KPQ +T+
Sbjct: 121 VDEQNDDLKDGDEDEEEKPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTS 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           QL AKDKKH+LP+ KKKPFKKV++++SR K
Sbjct: 181 QLLAKDKKHSLPVTKKKPFKKVARKKSRSK 184

[Close]

BLAST of CaUC04G069720 vs. NCBI nr
Match: KAG7026594.1 (hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.9 bits (603), Expect = 3.4e-58
Identity = 139/210 (66.19%), Postives = 161/210 (76.67%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           QEEA RRKRIE RKK  +      KE                 VL         L ADRP
Sbjct: 61  QEEAKRRKRIEERKKRKIE-----KEL----------------VL-----HGGVLPADRP 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VDEQN+D +D D++EEE+PLAP+SETT YDSGNIK+TVTTSEV R+EEID I+KPQ +T+
Sbjct: 121 VDEQNDDLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTS 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           QL AKDKKH+LP+ KKKPFKKV++++SR K
Sbjct: 181 QLLAKDKKHSLPVTKKKPFKKVARKKSRSK 184

[Close]

BLAST of CaUC04G069720 vs. ExPASy Swiss-Prot
Match: O14012 (Ribosomal RNA-processing protein 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp17 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.9e-04
Identity = 50/161 (31.06%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 71  GGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAMRRK 130
           GGEI      + +K+  + +   + F+++  ++Y+TGFHKRK +RRK A+ Q E+  R +
Sbjct: 10  GGEI------YSRKKGKKQRLEEIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREE 69

Query: 131 RIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRPVDEQNEDH 190
           R+  RK    SL ++ K   + RL  S++              +++L+ D     Q ED 
Sbjct: 70  RLALRK----SLREQRKRELAERLAFSKE-------------LNSSLENDEE-SSQQEDS 129

Query: 191 EDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEI 232
             + D EEE  + P  +TT YD  +  +TV   E   +EEI
Sbjct: 130 SSKSDSEEESSMEP--KTTEYDEDDKHVTVEIVEDDDDEEI 144

[Close]

BLAST of CaUC04G069720 vs. ExPASy TrEMBL
Match: A0A6J1CL67 (ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC111012309 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.7e-60
Identity = 144/212 (67.92%), Postives = 159/212 (75.00%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKNDG+EGGE+AQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           QEEA RRKRIE RKK      ++    + G                        L ADRP
Sbjct: 61  QEEAKRRKRIELRKKRK---EEKELVLYGG-----------------------ILPADRP 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VDEQN+DHE    EEEEKP AP+SETT YDSGNIK+TV TSEVSR+ EI  I+K QTATT
Sbjct: 121 VDEQNDDHE----EEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATT 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPKPQ 275
           QL AKDKKHNLPI KKKPFKKV+KQ+SRPKP+
Sbjct: 181 QLVAKDKKHNLPITKKKPFKKVAKQKSRPKPR 182

[Close]

BLAST of CaUC04G069720 vs. ExPASy TrEMBL
Match: A0A6J1EG67 (ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC111433808 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.3e-59
Identity = 138/210 (65.71%), Postives = 159/210 (75.71%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKN+ EEGG + QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           QEEA RRKRIE RKK  +     +                              L ADRP
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVL--------------------------HGGVLPADRP 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VDEQN+D +D D++EEEKPLAP+SETTMYDSGNIK+TVTTSEV R+EEID I+KPQ +T+
Sbjct: 121 VDEQNDDLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTS 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           QL AKDKKH+LPI KKKPFKKV++++SR K
Sbjct: 181 QLLAKDKKHSLPITKKKPFKKVARKKSRSK 184

[Close]

BLAST of CaUC04G069720 vs. ExPASy TrEMBL
Match: A0A1S3C1A3 (ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.8e-58
Identity = 141/210 (67.14%), Postives = 156/210 (74.29%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKNDGEEGGE+AQPHARHIKKRAL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           +EEAMRR RIEARKK  +   ++    + G                        L ADR 
Sbjct: 61  KEEAMRRMRIEARKKRKL---EKDLVLYGG-----------------------VLPADRA 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VD+QN+D ED    EEE+PLAP SE   YD+GN+K+TVTTSEVSRE EID I+KPQTA  
Sbjct: 121 VDDQNDDQED----EEEEPLAPFSEARTYDNGNVKVTVTTSEVSREGEIDPIDKPQTAIA 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           QL  KDKKHNLPI KKK FKKV+KQRSRPK
Sbjct: 181 QLLGKDKKHNLPITKKKLFKKVAKQRSRPK 180

[Close]

BLAST of CaUC04G069720 vs. ExPASy TrEMBL
Match: A0A6J1KRQ7 (ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.3e-57
Identity = 134/210 (63.81%), Postives = 157/210 (74.76%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKN+  EGG + QP++RH+KK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNEAAEGGALTQPYSRHVKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           QEEA RRKRIE RKK  +     +                              L ADRP
Sbjct: 61  QEEAKRRKRIEERKKRKIEKDLVL--------------------------HGGVLPADRP 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATT 242
           VDEQN+D +D D++EEEKPLAP+SETT YDSGNIK+TVTTSEV REEEID I+KPQ +T+
Sbjct: 121 VDEQNDDLKDGDEDEEEKPLAPISETTTYDSGNIKVTVTTSEVRREEEIDPIDKPQASTS 180

Query: 243 QLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           QL AKDKKH+LPI KKKPFKKV++++SR K
Sbjct: 181 QLLAKDKKHSLPITKKKPFKKVARKKSRSK 184

[Close]

BLAST of CaUC04G069720 vs. ExPASy TrEMBL
Match: A0A0A0KYB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 5.3e-57
Identity = 141/212 (66.51%), Postives = 154/212 (72.64%), Query Frame = 0


Query: 63  MVKNDGEEGGEIAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 122
           MVKNDGEEGGE+AQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ
Sbjct: 1   MVKNDGEEGGELAQPHARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ 60

Query: 123 QEEAMRRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRP 182
           +EEAMRR RIEARKK  +     +                              L ADR 
Sbjct: 61  KEEAMRRMRIEARKKRKLEKDLVL--------------------------HGGVLPADRA 120

Query: 183 VDEQNEDHEDEDDEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTA-- 242
           VD+QN    D+   EEE+PLAPLSE T YD+GN+K+TVTTSEVSRE+EID I+KPQTA  
Sbjct: 121 VDDQN----DDQGNEEEEPLAPLSEATTYDNGNVKVTVTTSEVSREDEIDPIDKPQTATV 180

Query: 243 TTQLFAKDKKHNLPIAKKKPFKKVSKQRSRPK 273
           T QL  KDKKHNLPI KKK FKKV+KQR RPK
Sbjct: 181 TAQLLGKDKKHNLPITKKKLFKKVAKQRGRPK 182

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BLAST of CaUC04G069720 vs. TAIR 10
Match: AT1G11240.1 (CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-29
Identity = 101/212 (47.64%), Postives = 130/212 (61.32%), Query Frame = 0


Query: 69  EEGGEIAQP-HARHIKKRALRNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAM 128
           EE G +A P  ARHI KRA +NK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA 
Sbjct: 8   EEAGSLATPTSARHIGKRARKNKSLTVSFDEKDLKDFVTGFHKRKKKRRKEAQKQQEEAF 67

Query: 129 RRKRIEARKKHSMSLGQRMKEFFSGRLLISQQNCRTIWVLRREGNQSTALKADRPVDEQN 188
           RRKRIEARK   +             L+++             GN            E N
Sbjct: 68  RRKRIEARKNRKLE-----------ELMVA-------------GN-----------GEDN 127

Query: 189 EDHEDED----DEEEEKPLAPLSETTMYDSGNIKITVTTSEVSREEEIDLIEKPQTATTQ 248
           ED E ED    ++EE +P A  S TTMYD+G +K+TVTTSE+SREEE + I K +T +T+
Sbjct: 128 EDGEAEDEVDAEDEEAEPDASTSATTMYDTGELKVTVTTSEISREEE-EPIRKEKTQSTE 182

Query: 249 LFAKDK---KHNLPIAKKKPFKKVSKQRSRPK 273
             +  K   K  +P+ K KP K+ S++RS  K
Sbjct: 188 SGSTAKASTKQPVPVRKTKPMKQ-SRRRSTTK 182

The following BLAST results are available for this feature:

BLAST of CaUC04G069720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881021.1	8.0e-68	71.16	nucleolar protein 12 [Benincasa hispida]	[more]
XP_022142095.1	1.4e-59	67.92	ribosomal RNA-processing protein 17-like [Momordica charantia] >XP_022142096.1 r...	[more]
XP_022926799.1	6.8e-59	65.71	ribosomal RNA-processing protein 17 [Cucurbita moschata]	[more]
XP_023517913.1	1.5e-58	66.67	ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]	[more]
KAG7026594.1	3.4e-58	66.19	hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CaUC04G069720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O14012	2.9e-04	31.06	Ribosomal RNA-processing protein 17 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]

BLAST of CaUC04G069720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL67	6.7e-60	67.92	ribosomal RNA-processing protein 17-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1EG67	3.3e-59	65.71	ribosomal RNA-processing protein 17 OS=Cucurbita moschata OX=3662 GN=LOC11143380...	[more]
A0A1S3C1A3	2.8e-58	67.14	ribosomal RNA-processing protein 17 OS=Cucumis melo OX=3656 GN=LOC103495882 PE=3...	[more]
A0A6J1KRQ7	5.3e-57	63.81	ribosomal RNA-processing protein 17 OS=Cucurbita maxima OX=3661 GN=LOC111497040 ...	[more]
A0A0A0KYB4	5.3e-57	66.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G414400 PE=3 SV=1	[more]

BLAST of CaUC04G069720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11240.1	2.7e-29	47.64	CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..283
IPR019186	Nucleolar protein 12	PFAM	PF09805	Nop25	coord: 84..199 e-value: 4.0E-12 score: 46.8
IPR019186	Nucleolar protein 12	PANTHER	PTHR14577	NUCLEOLAR PROTEIN 12	coord: 72..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G069720.1	CaUC04G069720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus