CaUC04G068520 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC04G068520
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Splicing factor-like protein
Location	Ciama_Chr04: 6946223 .. 6951834 (+)
RNA-Seq Expression	CaUC04G068520
Synteny	CaUC04G068520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCTCACTGGTATCTTCATCAATATACATCAGTATTAGATCATTCAAATTCTTAAATGGCATTTGAAAAAGTTTTATGGGATGCACTGTTTGGTAAAGATTCTTTATGACTTCAGTGTGAGTGGTGTATGCTATTGATTGAAACATGTGTTGTATGTTGAATATATATGTATTCTGTTCTTAATCTAATTAGTGGTTGTTGATTTATTTTTCAGGATCCCGAAACCAAAAAACCCCGTGTTAAGTTGTATGTTGATAGAGAGACAGGGAAGAAGAAGGGTGATGCTTTAGTCTCCTATATGAAGGTAGTTTTGTTATCCTCATTGTAACCATCCACTCTTTATTTTCCTGTCCTCTTTGTATAGTTTTCCTAAGTGATATTATTGTTTGGACTCCATATGGTCTACTCTGTGTTTACTTGGATAGGAACCTTCTGTTGCACTGGCTATGCAAATTTTGGATGGCACACCTCTTCGTCCGGGTGGAAAAATGCTAATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGTGATGTTTACTCCCTAACAATTCATTTTTTAACATATTTTACCTTTTTTTTTTTTTTCTTTACTAACTACAATTCTTTGTTCTTCAATGTTGTGACAACCAAGCGCTTTCTAATTAACCTTTTATTTCATTTGATGAACTTCCACAAGCAGGGGATAAATTTGTATCCAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTTGGCTGGGGTAAGATTTTTACTTTTCTCTGTTTATTGAACATGTTAAGAAAATTCTATATTTCTATTATTTATATTCTTATTCTTATTTTTATAATAGTACTTTTTTGTTCATGCCATCTAAGTTAGGTCATCACTATTTCTATTCTGTTGTGCTTGATATGTCAGGTTCTAAGAACTCTATCACTTTATTTTAATAGTTGAGAGCTGGGGTTTGAATCCTTGGATATGGATAGACATGTGTTAGGATAGGACCCATGCTTTAATAATAAGCCTCATGCAGAAGGTGTTAGAAATAATTAGTCAGGATTTCATTAGACCACTGTTAGAAGGTGGAAAATAGATGAATTTGTTTGGGAATAGTTTCTCATAAAAAAAGTCTGTTGGGAATAATTTCCCTTTTTACCTCTCCTGGAATAATTTCCATTTTTTTTACTTTGTGTAGGTGGCCGAGACGATGCAAAAATTTCAATTCCTGCAACTGTTATTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGGTTAGTTCTATAATCTTTTAGGTTTTAGCAAGTGATAACAATAGAAGTTTGTTATTTTATTCGTTTCTTATGGTGAAACTGGAGTGCACTTCTACTAACTTAATAATTCTTCAGTTGAGTAGCATATTGTATTTTCTAATGTCAATTAGGAATTCAATATCATTATTACGGCCTAATATTCTAATGTCTTAACCATAAAATTTAAATTGAAATTCAAAATCATGTTTATTTATTATATTTATAGATCATTAGGAATAAATGTGTATATTAGTTCTAGGGAAAATTACTTTTTTGGTCCCTAAGTTTTGGGTCTAGTTTTTATTTGGTTCCTAGGTTTCAAAATGTTATATTTTTTTAGTCCTTATGTTTTGAGTTTGATTTCAATTTACTCAACAGGTTCCAAAATGTTACAATCTTAACTTGGCGATTTGAGTTTTATTTCAATTTTTGTTTGCTAGGTTTCAAAATTCACACTTCTAACTTTAATTTTTTCACTAAATACTCACTTTCAGTTTTTAGTGTTAATGCCTATTAATTAATTTAAAAGAACTATAATTAATTTTCACTAGTTTTTTCACTATTAAAATTAATTTAAAAAATTTACTTCATATTAATTTTAAATTAATTATTAGGCATTTAACGTCAAAGAGTGGAATGAGTATTTAGTAAAATAATTAAGGTTAAAAGTGTAAATCTTAAAATTTAGTGTTTAAATTGAGAGAGTACTCGAATTTCAAGGTAAAATTGTAACATTTTGAAACCTAAAAACCAAATTGAAATCAAACTCAAAACTTAAGCACTAAAAGTGGTGTGTCCAAGACTAGAGAGAAATTCTAGAATGAATAATACCTCAATAATGCCCATTAAACTAGAAAAAGGGAGTTCATATACTATAGGCCATGCAACACTTACAAAACTAACGCAGCTTAAAGGCAGTTTAAAGGAAATAAAGTTACCAACTGGTAACTCTAAAAAATTACAGCAAGAGAAGAATTAAAACATAACACTACTAAAAGAATAAACTACAGAAAGAAGCTCCCAAAGAAATACATCAGTAACGAATAACCTGTGAACTAAATGGAAACTAGATTCAAAACCTAGGGACCAAAAAGGTATTTTCCTCTGAGTTACATTTAGGCTGACATAATTATTGTCCAGTTTTATCAACACCAGAAACCTGTCTATTAGCTTAGTCTATAGTGTTGGCCAGCGCAATATTGCCAGTCTTTCCTTTTAAATTATTTTTAGTATTTTCTTTTTTTGAACAAACAATGTGCATGTGTACCTTCATATGTAGATATGTTATGTATAATTTCCATAAATAGTTTCTAATTTGACTGAGAATATATTTGGACAGAAGTTAAGGGTAAAAACCTCGTAATATATTGTAATTGTTGATGAAACAATTGGTTCTTGTTTGCATTTTGAATGGTAAGTAGCACCTTGTATTTTTGTAGGCTGATGAAAATTTAGCTTCAGAAATCGAAACAGATGTCAAGGAGGAATGCACAAGATTTGGTCCTGTGGATTCAGTTAAGGTAATTAACTTTTTTTTTCACCCTTTCTGAATTTCGATCTTTCTGTTTGTAATTAGTATTGTTCTGAAAAGCAAAATGCTATCGAGATAATGTGAGTCTTTGCTGGAATTTTAGCATATCGAAAATAAAGTTGTGGGGTCTTAGGTTTAAGGTACAATAGTTCTTTGTTGTTGACAATATTTAATTTTTTTTCTTTTGGTTTGGTTTGATATAGGTTTGTGAAAACCATCCACAAGGTGTGGTTCTAATAAGATTCAAGGATAGGAGGGATGCTCAGAAATGTATAGAGTTGATGAATGGCAGATGGTAATACATTTTGCTGTTTCTTTAATTTTGTATTTTTCAAAAGCTAATTGTTTTTGGTTTAAATCTCTTTTTTTTTTTCCATGACAATAAGAGCTTTCTATCTTGGTTTTTGAACTTAAAAAATATTTATTTTGAGTTCTAATTGATGATGATTTTGTTTTTTGAAAATTCTGTTTGTTTTTTCACAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTACGGAACTTTTCATAAAAATGAAAAAGAGATAGAAATGCTCAAGGATACATATATCTTTAGGAGCCGTAGTCCTTGCACTTTTACCCTAAACATTTTCTCATCTAAATCCTGCAACCTATTTGGCCCTAATCAAGTCTTTTATTTTTTATTTTTTGAAGCAAATCAAGATATGTCATTCCTATGGTACAAACAAATAAGATAAAAGAGACCCAAATAGTTTGTTTTGTAAAGTTCAGGATTGCAATGAATGTTTTGAAAATTTTAAGGACAACTAGTTGAGGGATCATAATGTACATTTTAGAAGTTTAGAAACCGAAACGAGATTTGAATGTAAACTCAAAATGCTTTGGTGAAGATAGGTTCGTGTTAATAATGATTTTGCACAGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGACGATGGTTTAGTGAACCATGCTATGGTGAGGGATCTCGAAGCCGATGCTGCTCGCTTGGAGCAGTTTGGTTCTGAGCTTGAGGCTGATTAGCAATCACTCACTCTATTCTTCTCAATCTTTATAGTTAAGCACTATATGCTTGTATGAAAACACTAACCATTTTGTACATTATTATTATACTCACATTATTATGGCCTTCCTAATGTTGCAACTATAACTCCTCACCTGTTGTAAAGGAAAAATTTTCCCCA

mRNA sequence

ATGGCGTTCTCACTGGATCCCGAAACCAAAAAACCCCGTGTTAAGTTGTATGTTGATAGAGAGACAGGGAAGAAGAAGGGTGATGCTTTAGTCTCCTATATGAAGGAACCTTCTGTTGCACTGGCTATGCAAATTTTGGATGGCACACCTCTTCGTCCGGGTGGAAAAATGCTAATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGGGATAAATTTGTATCCAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTTGGCTGGGGTGGCCGAGACGATGCAAAAATTTCAATTCCTGCAACTGTTATTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGGCTGATGAAAATTTAGCTTCAGAAATCGAAACAGATGTCAAGGAGGAATGCACAAGATTTGGTCCTGTGGATTCAGTTAAGGTTTGTGAAAACCATCCACAAGGTGTGGTTCTAATAAGATTCAAGGATAGGAGGGATGCTCAGAAATGTATAGAGTTGATGAATGGCAGATGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGACGATGGTTTAGTGAACCATGCTATGGTGAGGGATCTCGAAGCCGATGCTGCTCGCTTGGAGCAGTTTGGTTCTGAGCTTGAGGCTGATTAGCAATCACTCACTCTATTCTTCTCAATCTTTATAGTTAAGCACTATATGCTTGTATGAAAACACTAACCATTTTGTACATTATTATTATACTCACATTATTATGGCCTTCCTAATGTTGCAACTATAACTCCTCACCTGTTGTAAAGGAAAAATTTTCCCCA

Coding sequence (CDS)

ATGGCGTTCTCACTGGATCCCGAAACCAAAAAACCCCGTGTTAAGTTGTATGTTGATAGAGAGACAGGGAAGAAGAAGGGTGATGCTTTAGTCTCCTATATGAAGGAACCTTCTGTTGCACTGGCTATGCAAATTTTGGATGGCACACCTCTTCGTCCGGGTGGAAAAATGCTAATGTCTGTTACTCAAGCTAAGTTTGAGCAAAAAGGGGATAAATTTGTATCCAAAAAAGTAGACAACAAGAAGAAAAAGAAGCTTAAAAAGGTTGAAGATAAGATACTTGGCTGGGGTGGCCGAGACGATGCAAAAATTTCAATTCCTGCAACTGTTATTCTCCGTTTTATGTTCACACCTGCTGAAATGAGGGCTGATGAAAATTTAGCTTCAGAAATCGAAACAGATGTCAAGGAGGAATGCACAAGATTTGGTCCTGTGGATTCAGTTAAGGTTTGTGAAAACCATCCACAAGGTGTGGTTCTAATAAGATTCAAGGATAGGAGGGATGCTCAGAAATGTATAGAGTTGATGAATGGCAGATGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGACGATGGTTTAGTGAACCATGCTATGGTGAGGGATCTCGAAGCCGATGCTGCTCGCTTGGAGCAGTTTGGTTCTGAGCTTGAGGCTGATTAG

Protein sequence

MAFSLDPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAKFEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD

Homology

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BLAST of CaUC04G068520 vs. NCBI nr
Match: XP_008442163.1 (PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis melo])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 284 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 343

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 344 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 403

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ
Sbjct: 404 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 463

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 464 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 498

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BLAST of CaUC04G068520 vs. NCBI nr
Match: KAA0041286.1 (splicing factor U2AF-associated protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 113 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 172

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 173 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 232

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ
Sbjct: 233 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 292

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 293 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 327

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BLAST of CaUC04G068520 vs. NCBI nr
Match: TYK02750.1 (splicing factor U2AF-associated protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 334 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 393

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 394 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 453

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ
Sbjct: 454 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 513

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 514 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 548

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BLAST of CaUC04G068520 vs. NCBI nr
Match: XP_031740498.1 (splicing factor U2AF-associated protein 2 isoform X1 [Cucumis sativus] >XP_031740499.1 splicing factor U2AF-associated protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 6.3e-114
Identity = 210/215 (97.67%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 291 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 350

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 351 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 410

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDR+DAQKCIELMNGRWFGG+Q
Sbjct: 411 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGKQ 470

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 471 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 505

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BLAST of CaUC04G068520 vs. NCBI nr
Match: XP_011653887.1 (splicing factor U2AF-associated protein 2 isoform X2 [Cucumis sativus] >XP_011653888.1 splicing factor U2AF-associated protein 2 isoform X2 [Cucumis sativus] >KAE8649734.1 hypothetical protein Csa_012481 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 6.3e-114
Identity = 210/215 (97.67%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 284 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 343

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 344 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 403

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDR+DAQKCIELMNGRWFGG+Q
Sbjct: 404 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGKQ 463

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 464 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 498

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BLAST of CaUC04G068520 vs. ExPASy Swiss-Prot
Match: Q8BGC0 (HIV Tat-specific factor 1 homolog OS=Mus musculus OX=10090 GN=Htatsf1 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.9e-27
Identity = 78/218 (35.78%), Postives = 121/218 (55.50%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DP+T++ +VKLY D + G  KGD L  Y+K+ SV LA+++LD   +R G K+ + V  AK
Sbjct: 163 DPQTEEFKVKLYKD-DQGNLKGDGLCCYLKKESVELALKLLDEDEIR-GYKLHVEV--AK 222

Query: 66  FEQKGDKFVSKKVDN-KKKKKLKKVEDKILGWGGRDDA---KISIPATVILRFMFTPAEM 125
           F+ KG+   SKK    K  KK   ++ K L W     A   ++     VIL+ MF P + 
Sbjct: 223 FQLKGEYDASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPNRLRHERVVILKNMFHPMDF 282

Query: 126 RADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWF 185
             D  + +EI  D++ EC++FG +  + + + HP GV  + F++  +A  CI+ ++GRWF
Sbjct: 283 EDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEEADHCIQTLDGRWF 342

Query: 186 GGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 220
           GGRQI A   DG  ++ +         RL  + + L A
Sbjct: 343 GGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNA 376

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BLAST of CaUC04G068520 vs. ExPASy Swiss-Prot
Match: O43719 (HIV Tat-specific factor 1 OS=Homo sapiens OX=9606 GN=HTATSF1 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-26
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DP+T++ +VKLY D + G  KGD L  Y+K  SV LA+++LD   +R G K+ + V  AK
Sbjct: 162 DPQTEEFKVKLYKDNQ-GNLKGDGLCCYLKRESVELALKLLDEDEIR-GYKLHVEV--AK 221

Query: 66  FEQKGDKFVSKKVDN-KKKKKLKKVEDKILGWGGRDDA---KISIPATVILRFMFTPAEM 125
           F+ KG+   SKK    K  KK   ++ K L W     A   ++     VI++ MF P + 
Sbjct: 222 FQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDF 281

Query: 126 RADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWF 185
             D  + +EI  D++ EC++FG +  + + + HP GV  + F+D  +A  CI+ ++GRWF
Sbjct: 282 EDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 341

Query: 186 GGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 220
           GGRQI A   DG  ++ +         RL  + + L A
Sbjct: 342 GGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNA 375

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BLAST of CaUC04G068520 vs. ExPASy Swiss-Prot
Match: Q5RB63 (HIV Tat-specific factor 1 homolog OS=Pongo abelii OX=9601 GN=HTATSF1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-26
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DP+T++ +VKLY D + G  KGD L  Y+K  SV LA+++LD   +R G K+ + V  AK
Sbjct: 162 DPQTEEFKVKLYKDNQ-GNLKGDGLCCYLKRESVELALKLLDEDEIR-GYKLHVEV--AK 221

Query: 66  FEQKGDKFVSKKVDN-KKKKKLKKVEDKILGWGGRDDA---KISIPATVILRFMFTPAEM 125
           F+ KG+   SKK    K  KK   ++ K L W     A   ++     VI++ MF P + 
Sbjct: 222 FQLKGEYDASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDF 281

Query: 126 RADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWF 185
             D  + +EI  D++ EC++FG +  + + + HP GV  + F+D  +A  CI+ ++GRWF
Sbjct: 282 EDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 341

Query: 186 GGRQIHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 220
           GGRQI A   DG  ++ +         RL  + + L A
Sbjct: 342 GGRQITAQAWDGTTDYQVEETSREREERLRGWEAFLNA 375

[Close]

BLAST of CaUC04G068520 vs. ExPASy Swiss-Prot
Match: O43120 (Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=uap2 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-24
Identity = 75/221 (33.94%), Postives = 111/221 (50.23%), Query Frame = 0


Query: 12  PRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAKFEQKGD 71
           PR+K+Y   E G  KGDAL+ + +  SV LA Q+ D T  R G    M V +A  + K +
Sbjct: 145 PRIKIY-RTEDGTPKGDALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKE 204

Query: 72  KFVSKKVDNKKKKKLKKVE----DKILGWGGRDD-----AKISIPATVILRFMFTPAEMR 131
           K V+K V    KKK  ++      +I  W   D+      K      V+L+ +FT  E+ 
Sbjct: 205 KTVNKDVGGALKKKALRLRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELD 264

Query: 132 ADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFG 191
               L  +++ D+ EE  + G V +V + +  P GVV +RF +  +A+ C+ LM GR+F 
Sbjct: 265 KTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFD 324

Query: 192 GRQIHASEDDGLVNHA-----MVRDLEADAARLEQFGSELE 219
           GR + AS  DG V         + D E +  RLE+F   LE
Sbjct: 325 GRVVEASIYDGKVRFQKSGKHTLDDEEDEEKRLEKFADWLE 364

[Close]

BLAST of CaUC04G068520 vs. ExPASy Swiss-Prot
Match: P53830 (Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUS2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-12
Identity = 60/190 (31.58%), Postives = 106/190 (55.79%), Query Frame = 0


Query: 11  KPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAKFEQK- 70
           +P  KLYV+ + G  KGDAL++Y KE SV LA+++++ +     GK +  V +A+F+ K 
Sbjct: 79  EPLCKLYVN-DKGAFKGDALITYSKEESVTLAIEMMNESIFL--GKQI-RVERAQFQNKE 138

Query: 71  GDKFVSKKVDNKK-------KKKLKKV----EDKILGWGGRDDAKISIPATVILRFMFTP 130
           GD    K+ D K+        K+LKK     E +++ +   D++      TVI   +F  
Sbjct: 139 GDNMHGKENDLKEFNGPEPPIKRLKKAKSEGEGEVIDYND-DESLAKADRTVIFANVFNI 198

Query: 131 AEMRADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNG 189
            +   ++++ ++I+ D+ E C   G VDS+ V  N  +G   + FK+ + A +C ++M G
Sbjct: 199 YKSYTNDDI-NDIQEDLLEGCEEIGQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTG 258

[Close]

BLAST of CaUC04G068520 vs. ExPASy TrEMBL
Match: A0A5D3BUE8 (Splicing factor U2AF-associated protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00040 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.1e-115
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 334 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 393

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 394 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 453

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ
Sbjct: 454 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 513

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 514 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 548

[Close]

BLAST of CaUC04G068520 vs. ExPASy TrEMBL
Match: A0A5A7TGW0 (Splicing factor U2AF-associated protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002780 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.1e-115
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 113 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 172

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 173 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 232

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ
Sbjct: 233 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 292

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 293 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 327

[Close]

BLAST of CaUC04G068520 vs. ExPASy TrEMBL
Match: A0A1S3B523 (splicing factor U2AF-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103486099 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.1e-115
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 284 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 343

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 344 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 403

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ
Sbjct: 404 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 463

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 464 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 498

[Close]

BLAST of CaUC04G068520 vs. ExPASy TrEMBL
Match: A0A0A0KZ32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G491190 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.0e-114
Identity = 210/215 (97.67%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK
Sbjct: 286 DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 345

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAK+SIPATVILRFMFTPAEMRADE
Sbjct: 346 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKVSIPATVILRFMFTPAEMRADE 405

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIETDVKEE T+FGPVDSVKVCENHPQGVVLIRFKDR+DAQKCIELMNGRWFGG+Q
Sbjct: 406 NLASEIETDVKEESTKFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGKQ 465

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD
Sbjct: 466 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 500

[Close]

BLAST of CaUC04G068520 vs. ExPASy TrEMBL
Match: A0A6J1G3U1 (HIV Tat-specific factor 1 OS=Cucurbita moschata OX=3662 GN=LOC111450511 PE=3 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.6e-110
Identity = 203/215 (94.42%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           DPETKKPRVKLYVD+ETGK KGDALV+Y+KEPSVALAMQILDGTPLRPGGK+LMSVTQAK
Sbjct: 286 DPETKKPRVKLYVDKETGKTKGDALVTYLKEPSVALAMQILDGTPLRPGGKILMSVTQAK 345

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATV+LRFMFTPAEMR DE
Sbjct: 346 FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVVLRFMFTPAEMRTDE 405

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           NLASEIE DVKEE TRFGPVDSVKVCENHPQGVVLIRFKDR+DAQKCIELMNGRWFGGRQ
Sbjct: 406 NLASEIEADVKEESTRFGPVDSVKVCENHPQGVVLIRFKDRKDAQKCIELMNGRWFGGRQ 465

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEAD 221
           IHASEDDGLVNHA VRDLEADA RLEQFGSELEAD
Sbjct: 466 IHASEDDGLVNHASVRDLEADAVRLEQFGSELEAD 500

[Close]

BLAST of CaUC04G068520 vs. TAIR 10
Match: AT5G16260.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 320.9 bits (821), Expect = 8.2e-88
Identity = 152/214 (71.03%), Postives = 185/214 (86.45%), Query Frame = 0


Query: 6   DPETKKPRVKLYVDRETGKKKGDALVSYMKEPSVALAMQILDGTPLRPGGKMLMSVTQAK 65
           + +T KPR+KLY D+ TGK KGDAL+SYMKEPSV LA++ILDG PLRP  K+LMSV++AK
Sbjct: 304 EDDTGKPRIKLYSDKATGKLKGDALISYMKEPSVDLAIKILDGAPLRPADKLLMSVSRAK 363

Query: 66  FEQKGDKFVSKKVDNKKKKKLKKVEDKILGWGGRDDAKISIPATVILRFMFTPAEMRADE 125
           FEQKG++F++K+ DNKKKKKLKKVE K+LGWGG DD+K+SIPATV+LR+MF+PAE+ ADE
Sbjct: 364 FEQKGERFITKQTDNKKKKKLKKVEQKLLGWGGTDDSKVSIPATVVLRYMFSPAELMADE 423

Query: 126 NLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDAQKCIELMNGRWFGGRQ 185
           +L +E+E DVKEE  + GP DSVKVCE+HPQGVVL+RFKDRRDAQKCIE MNGRW+  RQ
Sbjct: 424 DLVAELEEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNGRWYAKRQ 483

Query: 186 IHASEDDGLVNHAMVRDLEADAARLEQFGSELEA 220
           IHAS DDG VNHA VRD + +A RL+QF +ELEA
Sbjct: 484 IHASLDDGSVNHATVRDFDLEAERLDQFAAELEA 517

[Close]

BLAST of CaUC04G068520 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-08
Identity = 29/87 (33.33%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 104 ISIPA-TVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIR 163
           I +P+  ++L+ MF P+    +++   +I+ DVKEEC++FG ++ + V +N   G V +R
Sbjct: 460 IGVPSECLLLKNMFDPS-TETEDDFDEDIKEDVKEECSKFGKLNHIFVDKN-SVGFVYLR 519

Query: 164 FKDRRDAQKCIELMNGRWFGGRQIHAS 190
           F++ + A      ++GRWF G+ I A+
Sbjct: 520 FENAQAAIGAQRALHGRWFAGKMITAT 544

[Close]

BLAST of CaUC04G068520 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-08
Identity = 29/87 (33.33%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 104 ISIPA-TVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIR 163
           I +P+  ++L+ MF P+    +++   +I+ DVKEEC++FG ++ + V +N   G V +R
Sbjct: 498 IGVPSECLLLKNMFDPS-TETEDDFDEDIKEDVKEECSKFGKLNHIFVDKN-SVGFVYLR 557

Query: 164 FKDRRDAQKCIELMNGRWFGGRQIHAS 190
           F++ + A      ++GRWF G+ I A+
Sbjct: 558 FENAQAAIGAQRALHGRWFAGKMITAT 582

[Close]

BLAST of CaUC04G068520 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-08
Identity = 29/87 (33.33%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 104 ISIPA-TVILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIR 163
           I +P+  ++L+ MF P+    +++   +I+ DVKEEC++FG ++ + V +N   G V +R
Sbjct: 509 IGVPSECLLLKNMFDPS-TETEDDFDEDIKEDVKEECSKFGKLNHIFVDKN-SVGFVYLR 568

Query: 164 FKDRRDAQKCIELMNGRWFGGRQIHAS 190
           F++ + A      ++GRWF G+ I A+
Sbjct: 569 FENAQAAIGAQRALHGRWFAGKMITAT 593

[Close]

BLAST of CaUC04G068520 vs. TAIR 10
Match: AT5G09880.1 (Splicing factor, CC1-like )

HSP 1 Score: 51.6 bits (122), Expect = 9.3e-07
Identity = 28/80 (35.00%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 110 VILRFMFTPAEMRADENLASEIETDVKEECTRFGPVDSVKVCENHPQGVVLIRFKDRRDA 169
           ++L+ MF PA    + N   EI  DV +EC+++GPV+ + V +N   G V +RF+    A
Sbjct: 437 LLLKNMFDPA-TETEPNFDLEIRDDVADECSKYGPVNHIYVDKN-SAGFVYLRFQSVEAA 496

Query: 170 QKCIELMNGRWFGGRQIHAS 190
                 M+ RWF  + I A+
Sbjct: 497 AAAQRAMHMRWFAQKMISAT 514

The following BLAST results are available for this feature:

BLAST of CaUC04G068520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442163.1	1.3e-114	98.60	PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis melo]	[more]
KAA0041286.1	1.3e-114	98.60	splicing factor U2AF-associated protein 2 [Cucumis melo var. makuwa]	[more]
TYK02750.1	1.3e-114	98.60	splicing factor U2AF-associated protein 2 [Cucumis melo var. makuwa]	[more]
XP_031740498.1	6.3e-114	97.67	splicing factor U2AF-associated protein 2 isoform X1 [Cucumis sativus] >XP_03174...	[more]
XP_011653887.1	6.3e-114	97.67	splicing factor U2AF-associated protein 2 isoform X2 [Cucumis sativus] >XP_01165...	[more]

BLAST of CaUC04G068520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8BGC0	7.9e-27	35.78	HIV Tat-specific factor 1 homolog OS=Mus musculus OX=10090 GN=Htatsf1 PE=1 SV=1	[more]
O43719	1.0e-26	35.78	HIV Tat-specific factor 1 OS=Homo sapiens OX=9606 GN=HTATSF1 PE=1 SV=1	[more]
Q5RB63	1.0e-26	35.78	HIV Tat-specific factor 1 homolog OS=Pongo abelii OX=9601 GN=HTATSF1 PE=2 SV=1	[more]
O43120	4.8e-24	33.94	Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces pombe (strain 9...	[more]
P53830	1.9e-12	31.58	Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CaUC04G068520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUE8	6.1e-115	98.60	Splicing factor U2AF-associated protein 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7TGW0	6.1e-115	98.60	Splicing factor U2AF-associated protein 2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B523	6.1e-115	98.60	splicing factor U2AF-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC10348609...	[more]
A0A0A0KZ32	3.0e-114	97.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G491190 PE=3 SV=1	[more]
A0A6J1G3U1	1.6e-110	94.42	HIV Tat-specific factor 1 OS=Cucurbita moschata OX=3662 GN=LOC111450511 PE=3 SV=...	[more]

BLAST of CaUC04G068520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16260.1	8.2e-88	71.03	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G16940.1	4.9e-08	33.33	Splicing factor, CC1-like	[more]
AT2G16940.3	4.9e-08	33.33	Splicing factor, CC1-like	[more]
AT2G16940.2	4.9e-08	33.33	Splicing factor, CC1-like	[more]
AT5G09880.1	9.3e-07	35.00	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 200..220
None	No IPR available	CDD	cd12285	RRM3_RBM39_like	coord: 107..192 e-value: 9.60419E-40 score: 129.587
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 109..189 e-value: 4.3E-7 score: 39.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 132..187 e-value: 5.7E-10 score: 38.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 126..193 score: 9.729138
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 121..189 e-value: 0.002 score: 27.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 108..190 e-value: 2.3E-29 score: 103.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..59 e-value: 1.5E-7 score: 33.6
IPR034393	TatSF1-like	PANTHER	PTHR15608	SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2	coord: 6..218
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 13..58
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 106..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC04G068520.1	CaUC04G068520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding