CaUC03G064880 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G064880
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	AP complex subunit sigma
Location	Ciama_Chr03: 30342360 .. 30348982 (-)
RNA-Seq Expression	CaUC03G064880
Synteny	CaUC03G064880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGATGTACAATTATAAGAGCGTAATATTACAATAGAAGAAGTAGGGATTTATCTTTTTATAGGTTGAAATAGATTTAGATGACATTTGAACTTTTTATAAACGAGAAATTGTTTTAAGCTTCTCTTTTGTGTAATGCAATGGTGTCGTGTCCAATGATTCAATTATTTTAGTTTTAGCTTATGGATGACAAACTAACGTCTCTAATGACTGGCTTGAAAACCACTCCCATGGATCAATGGTGCTATGTCTAGAGATTAGATATCTCTTTAGTTCCTTATTCTTCTTTTTATTACTAAAAAAGAGCATAATATTATATACGTGGGGGCAAACATTCAAATATCGAATGAGTTAAAATTGTGCTCAAGTTAACACAATAAACTTGGTTTACTAAGGTCTCATTTAGTGCCTATTTGATTTTTTAAAATTTTTTCTTGTATCACAATTACTATAGAGTGATTTACACACTTGATAGGGAAGTATTTTGAATTTGCTAAATTCTAAAAACAAAAATAAGTTATTAAAATTACTACCTTATTTCATTTTGTTTCTAAAAATTAGATTGGTTTCTTCACAATTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTAAGCTTTTCACATTTGTTAAAAATACATATTTTAATTCTAAGTTAAATTATTGTTGGAGAAATGATGTATAAAAATTGGATACACTAGCAAACTGATTACACCACAACTAGATACAGTAATTACAATACACACACGATATACACTAATAATAATGTTTAAATTCAAAAGTGGGTGGAATAACAATGCTTATAAATTGAAATACTCAAAAACTTATAAATGTAGGACTGGTATGGCAACCCTAGAGGGGTGAATATGATTTATTCAAACTAATGAAATATTTTTCCTAATGTAGGCTCAATTAAACAAATTAACACACTTTTGTTAACAAGTAATTTAAACAATAAACTCATGCAAATAAAAGTTTATAATACTACTTTAAGCACCCTATTTGATATTAATAACAAGATTGATAATGAATGTAGAAATTTAAGAACTACCAATCAAAATATACAAATATGAGCAATTAATTTGAAGAACAAATATTGTAATTAATTTCATGTAATAAACTATAATAACAAAATTAGAGTATAGGGATAGAAAAATTTACACCGAAAATTTTATAGTGGTTTGGCACAACCGACATATATCCAATTCCCAAGCTTCTCTTGGGTATGTCACTACAAACTTGACTCTTTTTCACGGCTTAGAATCGAACCACTATAAAGTTTTTTTTTTCGGGCACAAGAATAAATCTGATCCTCTCCACGGTTTCGAACCTAACCATTACAACCATTCTTTTTAGGGATCAAGAGCAACTCTTACAATGAATTTGGAGATGAAGAACAAGAGGAGAAAAACTCTCTCAAAGAGTAGAATTACAAATTTAAGCACTCAACAAATCAATCCTCACCATACAATAAATCTCTCTCAAGAATTAGATGAAAAGAAGAAAATTGAAGCTTGGAGAGAGCAACAATGAAGGCTTTGTATATTTGGAGAGCATTGAAAATTATAAAGATGTTGTGGAAATTTGGAGAAAAAGATGAGCTTAAGAAGAGAGTGAAGATGGTGAAAACCAAACTTAATTTGGGCCTTTAGATCTTGGAAAAGACAAATTAATGGTGGAGATTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAATATAGCCGCTAAACATAAACATATATAATAATTGTTAAATTCATTAAAAAAATAAAAAGATCACCATGTGTCACTCTCCATGCTCTAAGTGCCACTTTTTAATTGGTCTACTTTGATAAACAACAAAAAAAAAAAGGGCACGTTATCAACTCAGAATTTTTCAGTTTAGCATGTTTTGGTTATATCTCTTTCGTTTAAGCTCCAATTAGAGTGATTGAAATTGCGTTGGAATAGTTATTTCGAGCTCTATGCAATGAGCTCTTCAAAACACTAAAATTGTTAGTGACTAAATACAGATTTGTTATCATCAAAACATTAATTAAGTAAGTAATTAATTAAATTATCTAATTTGAGACTAAAGACAAAAAAGCCAACAGTTTCTACAATCATGTAAGTTTGAGAGTCCAATTTTAATATTTGTATAAATTTGATGGTTTAATTTCTATAATTAAAAGTTTTAAAGATATAATTAAAACTAAATTATACTTTAGAGATGGTTGGTGCAATTTAACCTAAATTAAGGGGTGCAAAATTACATCAAAATTGAGTCATGTAGATGTAGAAGGGGGTGGTTGGAGCAATTTTTCTTAAAAATTATTTTGCCAAGACGCCAGACCGTTTATTTATTTAATAATAATAAAGAAATTAAATAAACAAATCCGGAGATTTCATTCTCTTGGCGATCGATTTAGGCTTTTCTCGCCGGTGTGAGTTTCGTGGAATTTGTGAAAAGCAGAATGGGGATCAGATTCATTCTCATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAATGAACAACAGGTAACTTTGGATTCTTTTGTCTAGATCTCAATCCACTGCCTCTGAATTTCTCTTCCATATCATCTGAATCCTTTAATTATTTTGAATTTCTGTTGATCTGTAAGTTAAATGCAAATTATGGGGCCCTAGGTACGGTTAGTACTGCAAACAAAGTTTGGCATTAACTAGGAAGGAAGTGATCATGAGCTATTCATAACTGAGAACAATTACCTTAATTGGTATGAAGCCTTTTGGTGGTATTGAGGGTTTATTTCCAAATAGACAATATCATACCATTGTAAAGATAGGTGGAGGTTCAGTTATCCTTATCCATTGATATCAAAGCTATGGTCTAAACCTAGCTATGTGGGTGAGATCTGCAGTGGTTTTGAACAAAAGTGGTGGGTCTTGTGGATGAATCCTCAGATTGGGCAAAAAGTGTTTGGAGTGGCAAGCAAGTAATAGCTCTATCAAGCTCACTAGTAAAGGAGTAGATTTTTTTTCGAGGGGACGAGATTAAAGGTGTGATAGGTGGTTGATGCCAAGTATAGTCCACAAAAATGGTTTGTGGTTGTGTTCTATTTGGCTTTACAACTAAGCATTGACAAGCAAGCTCTCATAGGTGAGGGAGTGGGCGAATGAGGGAAGACTCAAGGTGATACTTTGTTCAAGGGCAGGATTGTTAAAAGTTGAAAAAAAGTCTCACATTTATCAGAGAAGGAAGTGATCATGGGTTTATAAATGAGGACAATTATCTCTATCGGTATGGGGTCTTTGGTACTGAGGATTTATTGCCAAAGTGAATAATATCATACTATTGTGGACATAGGTGGAGGTCATGTTGTCTTTATTAATTGGTATTAGAGTCATGGTATAAACCTAGCTGCGTGGGTGAGATCCTTAGCGATCTCAGACAAAAGTAGTGAGTTTTGTAGATAAATCCCCAAATCGGGCAAAAAGTGCTTGGAGCATTGCAACTCATAACTCTATCAAGCTCATTGGTAAAGGAGTAGATCTTTGTTCGATGGGAGGAGATTAAGGGTGCAATAAGTGGTCTACACCAAGTGTATTCCACAAAAATGATTCATGGTTGTGCTTTACCTTGCTTTGCAACTAGGCCTTGATAATGGCAAGCTCTTGTAGGCGACTGGGAGTAGACGAATGAGGGAAGATTCCAGGTGGTGTTCAAGGTGAGGATTGTTAGGAGTGCAATTAAAGTCCTATGTTGGTTAGGGAAGGGAGTGATAATGGGTATATAAGTGAGGACAATTATCTCTATTGATACCACCAAAAAGGAGTCCTGAGGGTTTATGCCCAAAGTGGACAATGTCATTCCATTGTAGAGATTGGTGGAGGATCCATTGTGCTTAACAGGTAGTATAGCATGTTAGCATTTAAGTCTAGAGCTGGTCAGTAGTTGACTCTGGATTGCTGATCTAGATGATAGCATTTAAGTCTCGAAGGCGATATGTAGCATTTGAAACCATTTAGTTCACATCCCATTTCGTAGTGCTTTATTGGATCAATCATCTTCTATTTCAACATCTTATACTAGTTAGTTTCCACGTGCAGCATTTATCCATTTTTCCTTCCGTTAGTGTTTTTACTCTAGTCTGCAGTATGATTTTCAATTACTCAGATGAATAATAGGGAGTTTCATAAGCCATTTCTTTCCCTGGAATGAAATGCATAACAAGAAGTAATGTCAAAGAAAGAAATCGATAAAATAACTAAATATGGTGTGCGGCCAGGTTTGCCTGGAACCATAACAAGCAATGGGCAAGCCAATGTTGCCTAGTTATTAATTGGTAATCTAGTCTGCTTCTCTATCTGCAAGGCGTATGCAACTGCAATTTCCCTGTTTTGGTTGAAAAGATTAATCTTGCACAACAGTTAGGAGGCTAGCATATGAACATTAGTGATGTCCGTCTGTTTTCTTGGAATCCTAACACGTGCTCTGTTTTTCATCCTCACCCGGGAACCAATTTTAGTGCAATTGCAGGTTCTTGATTGCACCTACCACATCTATAGCATCTATCTTCACTTATAATATTTTCTTTGTGAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTGGTTGGAGTTGACAATGATGAAGTAAGTTTATTTGTACTTCATCTACTATCGATAATTAATTTATGCACTGATTGTTTCCTTTTGTTTGCCAATGATCAGTATACCATCATAGAAATTGATATGCTTAGTAACCAAATGAGTTTATTGTGGCCCGTTTTGTGGAATTTATCAGATATGCGTAACACACATTTCTAATATGCATGTGCTTATTTGCTATGAATATCAATTAGAAAGCTTCTAGATATCATTGTTAGACCTTGCTTATGGCTCCTATATTAACACCTGCCTCTAATAAAATGCTTAGATTGGTTAGGTTCATCGAGACAAGTCCTTGTCATTAAGTTTTAGATTTGGGTACAGAATGGGGCTTTAGTTTTTCTTTTGGTTCCTCTCTCAAACATTTCCTCACCGTTTCTTCATATCTCAATGTTGCAGAATGAACTGGCAATTTTGGAATTCATTCACCTGTTGGTCGAAACCATGGACCGTCATTTTGGGAATGTGGTAAGCCCTCATTTTCAATCTGAGATTGTGTCTTATGAACTTTGTTTTCTTTTTCGTTCTCTTTTTCAGGAGATTGTATCCTTGGAACAATTTCCTTTTCCTTGTTTATGTCTTCTGAATGATGTCTCCCTTATGGGTTTCACTGAGTTGTTGGATTAATTTACGACCTTACTTGAGTAGGATCTGTTTTATAGGTTGTTCTATAGGTTGTACCACTATGTTCTTGAGTTCTAAAATAAATTGCCGGATTGATCTGCAGTGTGAGCTAGATATAATGTTCCATCTAGAGAAAGCACATTTCATGCTGGAGGAGATGGTCATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTCTATCCCCAATACAACTGATGGAGAAATCATCATGAAAATCTACCACTTTGTTTCTTTGGTGCAAAATCTTGGCTGTCTTTATACATTACTCCATTAAGGTATCGGATTAATGTAATGAATTCATTTGATGGTGCTCTGTTCAGCCACGTGGTACCGAGCAAGCAAATTCGCGTCAGTCCAAGCAATACATTATCATGTATATTGTCAAAGATTTAGGATCCATTTAA

mRNA sequence

ATGCTCGATGCTTTTCTCGCCGGTGTGAGTTTCGTGGAATTTGTGAAAAGCAGAATGGGGATCAGATTCATTCTCATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAATGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTGGTTGGAGTTGACAATGATGAAAATGGGGCTTTAGTTTTTCTTTTGGTTCCTCTCTCAAACATTTCCTCACCGTTTCTTCATATCTCAATGTTGCAGAATGAACTGGCAATTTTGGAATTCATTCACCTGTTGGTCGAAACCATGGACCGTCATTTTGGGAATGTGCCACGTGGTACCGAGCAAGCAAATTCGCGTCAGTCCAAGCAATACATTATCATGTATATTGTCAAAGATTTAGGATCCATTTAA

Coding sequence (CDS)

ATGCTCGATGCTTTTCTCGCCGGTGTGAGTTTCGTGGAATTTGTGAAAAGCAGAATGGGGATCAGATTCATTCTCATGGTGAACAAGCAAGGCCAAACCCGCCTCGCTCAGTATTACGAAAATCTTACTCTCGAAGAACGTCGAGCTCTTGAGGGTGAAATCGTTCGCAAATGCCTCGCTCGTAATGAACAACAGTGTTCCTTTGTCGAGCATCGCAACTATAAGATTGTATATAGGCGATATGCATCTCTGTTTTTTCTGGTTGGAGTTGACAATGATGAAAATGGGGCTTTAGTTTTTCTTTTGGTTCCTCTCTCAAACATTTCCTCACCGTTTCTTCATATCTCAATGTTGCAGAATGAACTGGCAATTTTGGAATTCATTCACCTGTTGGTCGAAACCATGGACCGTCATTTTGGGAATGTGCCACGTGGTACCGAGCAAGCAAATTCGCGTCAGTCCAAGCAATACATTATCATGTATATTGTCAAAGATTTAGGATCCATTTAA

Protein sequence

MLDAFLAGVSFVEFVKSRMGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFGNVPRGTEQANSRQSKQYIIMYIVKDLGSI

Homology

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BLAST of CaUC03G064880 vs. NCBI nr
Match: KAG5605935.1 (hypothetical protein H5410_027427 [Solanum commersonii])

HSP 1 Score: 188.3 bits (477), Expect = 5.3e-44
Identity = 100/124 (80.65%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHR YKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARNEQQCSFVEHRTYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDN+E   +V+         S  +  S+ QNELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNEEVKIIVWFAF------SSLMSYSIWQNELAILEFIHLLVETMDRH 118

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 118

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BLAST of CaUC03G064880 vs. NCBI nr
Match: XP_004135683.1 (AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 complex subunit sigma [Cucumis melo] >XP_022960614.1 AP-4 complex subunit sigma [Cucurbita moschata] >XP_022987894.1 AP-4 complex subunit sigma [Cucurbita maxima] >XP_023515579.1 AP-4 complex subunit sigma [Cucurbita pepo subsp. pepo] >XP_038878646.1 AP-4 complex subunit sigma [Benincasa hispida] >TYK10132.1 AP-4 complex subunit sigma [Cucumis melo var. makuwa] >KGN66196.1 hypothetical protein Csa_007414 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.4e-43
Identity = 99/124 (79.84%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDNDE                         NELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNDE-------------------------NELAILEFIHLLVETMDRH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. NCBI nr
Match: MBA0690339.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 185.3 bits (469), Expect = 4.5e-43
Identity = 104/130 (80.00%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDEN---GALVFLLVPLSN---ISSPFLHISMLQNELAILEFIHLLV 138
           RRYASLFFLVGVDNDE        ++L P S    + S  L  S   NELAILEFIHLLV
Sbjct: 61  RRYASLFFLVGVDNDEGVYAQLYPWILFPTSEDSPLGSQSLR-SASPNELAILEFIHLLV 120

Query: 139 ETMDRHFGNV 143
           ETMDRHFGNV
Sbjct: 121 ETMDRHFGNV 129

[Close]

BLAST of CaUC03G064880 vs. NCBI nr
Match: KAG6723485.1 (hypothetical protein I3842_03G210400 [Carya illinoinensis])

HSP 1 Score: 184.9 bits (468), Expect = 5.8e-43
Identity = 100/132 (75.76%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 11  FVEFVKSRMGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVE 70
           F   VK +MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLAR EQQCSFVE
Sbjct: 32  FFGVVKKKMGIRFILMVNKQGQTRLAQYYEYLTLEERRALEGEIVRKCLARTEQQCSFVE 91

Query: 71  HRNYKIVYRRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHL 130
           HRNYKIVYRRYASLFFLVGVDNDE                         NELAILEFIHL
Sbjct: 92  HRNYKIVYRRYASLFFLVGVDNDE-------------------------NELAILEFIHL 138

Query: 131 LVETMDRHFGNV 143
           LVETMDRHFGNV
Sbjct: 152 LVETMDRHFGNV 138

[Close]

BLAST of CaUC03G064880 vs. NCBI nr
Match: KAF9851297.1 (hypothetical protein H0E87_015480 [Populus deltoides])

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-42
Identity = 99/132 (75.00%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDNDE                         NELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNDE-------------------------NELAILEFIHLLVETMDRH 107

Query: 139 FGNVPRGTEQAN 151
           FGNV R   Q +
Sbjct: 121 FGNVDRSLLQVS 107

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BLAST of CaUC03G064880 vs. ExPASy Swiss-Prot
Match: O82201 (AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43
Identity = 94/124 (75.81%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFF+VGVD+DE                         NELAILEFIHLLVETMD+H
Sbjct: 61  RRYASLFFMVGVDDDE-------------------------NELAILEFIHLLVETMDKH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. ExPASy Swiss-Prot
Match: Q54NZ4 (AP-4 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           M I++ L+VN +G+TRL+QYYE++  EER A+E EI+RKCL+R E QCSFVE+++YK++Y
Sbjct: 1   MAIKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDYKVIY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           R+YA+LFF+VGVD  E                         NELAILE IH  VE +D  
Sbjct: 61  RKYATLFFIVGVDTTE-------------------------NELAILELIHNYVEILDSC 99

Query: 139 FGNV 143
           F NV
Sbjct: 121 FDNV 99

[Close]

BLAST of CaUC03G064880 vs. ExPASy Swiss-Prot
Match: Q9Y587 (AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.3e-23
Identity = 52/122 (42.62%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 21  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 80
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 81  YASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFG 140
           YA+LF +VGV++ E                         NE+AI EFIH  VE +D +F 
Sbjct: 62  YAALFIVVGVNDTE-------------------------NEMAIYEFIHNFVEVLDEYFS 98

Query: 141 NV 143
            V
Sbjct: 122 RV 98

[Close]

BLAST of CaUC03G064880 vs. ExPASy Swiss-Prot
Match: Q3ZBB6 (AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.1e-23
Identity = 52/122 (42.62%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 21  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 80
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+++ CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQ 61

Query: 81  YASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFG 140
           YA+LF +VGV++ E                         NE+AI EFIH  VE +D +F 
Sbjct: 62  YAALFIVVGVNDTE-------------------------NEMAIYEFIHNFVEVLDDYFS 98

Query: 141 NV 143
            V
Sbjct: 122 RV 98

[Close]

BLAST of CaUC03G064880 vs. ExPASy Swiss-Prot
Match: Q9WVL1 (AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-22
Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 21  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 80
           I+F LMVNKQGQTRL++YYE++ + +R  LE E+ + CL+R+ +QCSF+E++++K++YR+
Sbjct: 2   IKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDFKLIYRQ 61

Query: 81  YASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFG 140
           YA+LF +VGV++ E                         NE+AI EFIH  VE +D +F 
Sbjct: 62  YAALFVVVGVNDTE-------------------------NEMAIYEFIHNFVEVLDGYFS 98

Query: 141 NV 143
            V
Sbjct: 122 RV 98

[Close]

BLAST of CaUC03G064880 vs. ExPASy TrEMBL
Match: A0A6J1JK41 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.7e-43
Identity = 99/124 (79.84%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDNDE                         NELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNDE-------------------------NELAILEFIHLLVETMDRH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. ExPASy TrEMBL
Match: A0A5D3CFV6 (AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002750 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.7e-43
Identity = 99/124 (79.84%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDNDE                         NELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNDE-------------------------NELAILEFIHLLVETMDRH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. ExPASy TrEMBL
Match: A0A0A0M1T6 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.7e-43
Identity = 99/124 (79.84%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDNDE                         NELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNDE-------------------------NELAILEFIHLLVETMDRH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. ExPASy TrEMBL
Match: A0A6J1HBI1 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.7e-43
Identity = 99/124 (79.84%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDNDE                         NELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNDE-------------------------NELAILEFIHLLVETMDRH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. ExPASy TrEMBL
Match: A0A1S3BQ09 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.7e-43
Identity = 99/124 (79.84%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFFLVGVDNDE                         NELAILEFIHLLVETMDRH
Sbjct: 61  RRYASLFFLVGVDNDE-------------------------NELAILEFIHLLVETMDRH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44
Identity = 94/124 (75.81%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 19  MGIRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVY 78
           MGIRFILMVNKQGQTRLAQYYE LTLEERRALEGEIVRKCLARN+QQCSFVEHRNYKIVY
Sbjct: 1   MGIRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVY 60

Query: 79  RRYASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRH 138
           RRYASLFF+VGVD+DE                         NELAILEFIHLLVETMD+H
Sbjct: 61  RRYASLFFMVGVDDDE-------------------------NELAILEFIHLLVETMDKH 99

Query: 139 FGNV 143
           FGNV
Sbjct: 121 FGNV 99

[Close]

BLAST of CaUC03G064880 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 21  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 80
           IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 81  YASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFG 140
           YA LFF V VD                         +  NELA LE IHL VE +D  F 
Sbjct: 62  YAGLFFSVCVD-------------------------ITDNELAYLESIHLFVEILDHFFS 98

Query: 141 NV 143
           NV
Sbjct: 122 NV 98

[Close]

BLAST of CaUC03G064880 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 21  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 80
           I F+L+V++QG+ RL ++Y   T +ER  +  E+    L R  + C+F+E R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 81  YASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFG 140
           YASL+F + +D  +                         NEL +LE IH  VE +DR+FG
Sbjct: 62  YASLYFCMCIDEAD-------------------------NELEVLEIIHHYVEILDRYFG 98

Query: 141 NV 143
           +V
Sbjct: 122 SV 98

[Close]

BLAST of CaUC03G064880 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 21  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 80
           I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 81  YASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFG 140
           YASL+F + +D ++                         NEL +LE IH  VE +DR+FG
Sbjct: 62  YASLYFCMCIDQED-------------------------NELEVLEIIHHYVEILDRYFG 98

Query: 141 NV 143
           +V
Sbjct: 122 SV 98

[Close]

BLAST of CaUC03G064880 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 21  IRFILMVNKQGQTRLAQYYENLTLEERRALEGEIVRKCLARNEQQCSFVEHRNYKIVYRR 80
           I F+L+V++QG+ RL ++Y     +ER  +  E+    L R  + C+FVE R YK+VY+R
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 81  YASLFFLVGVDNDENGALVFLLVPLSNISSPFLHISMLQNELAILEFIHLLVETMDRHFG 140
           YASL+F + +D ++                         NEL +LE IH  VE +DR+FG
Sbjct: 62  YASLYFCMCIDQED-------------------------NELEVLEIIHHYVEILDRYFG 98

Query: 141 NV 143
           +V
Sbjct: 122 SV 98

The following BLAST results are available for this feature:

BLAST of CaUC03G064880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5605935.1	5.3e-44	80.65	hypothetical protein H5410_027427 [Solanum commersonii]	[more]
XP_004135683.1	3.4e-43	79.84	AP-4 complex subunit sigma [Cucumis sativus] >XP_008450804.1 PREDICTED: AP-4 com...	[more]
MBA0690339.1	4.5e-43	80.00	hypothetical protein [Gossypium aridum]	[more]
KAG6723485.1	5.8e-43	75.76	hypothetical protein I3842_03G210400 [Carya illinoinensis]	[more]
KAF9851297.1	1.3e-42	75.00	hypothetical protein H0E87_015480 [Populus deltoides]	[more]

BLAST of CaUC03G064880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82201	2.1e-43	75.81	AP-4 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At2g19790 PE=1 SV=...	[more]
Q54NZ4	1.1e-25	49.19	AP-4 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap4s1 PE=3 SV...	[more]
Q9Y587	5.3e-23	42.62	AP-4 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP4S1 PE=1 SV=1	[more]
Q3ZBB6	9.1e-23	42.62	AP-4 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP4S1 PE=2 SV=1	[more]
Q9WVL1	4.5e-22	42.62	AP-4 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap4s1 PE=2 SV=1	[more]

BLAST of CaUC03G064880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JK41	1.7e-43	79.84	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111485299 PE=3 SV=1	[more]
A0A5D3CFV6	1.7e-43	79.84	AP complex subunit sigma OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0M1T6	1.7e-43	79.84	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_1G575120 PE=3 SV=1	[more]
A0A6J1HBI1	1.7e-43	79.84	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111461350 PE=3 SV=1	[more]
A0A1S3BQ09	1.7e-43	79.84	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103492280 PE=3 SV=1	[more]

BLAST of CaUC03G064880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19790.1	1.5e-44	75.81	SNARE-like superfamily protein	[more]
AT1G47830.1	2.2e-16	41.80	SNARE-like superfamily protein	[more]
AT2G17380.1	2.5e-15	36.07	associated protein 19	[more]
AT4G35410.2	2.5e-15	36.07	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.1	2.5e-15	36.07	Clathrin adaptor complex small chain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 20..161 e-value: 6.7E-39 score: 135.2
None	No IPR available	PANTHER	PTHR11753:SF50	AP COMPLEX SUBUNIT SIGMA	coord: 119..142
None	No IPR available	PANTHER	PTHR11753:SF50	AP COMPLEX SUBUNIT SIGMA	coord: 19..99
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 21..99 e-value: 1.9E-20 score: 73.3
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 19..99
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 119..142
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 21..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G064880.1	CaUC03G064880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane