CaUC03G062020 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G062020
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description(1->3)-beta-glucan endohydrolase
LocationCiama_Chr03: 26115402 .. 26115720 (-)
RNA-Seq ExpressionCaUC03G062020
SyntenyCaUC03G062020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTTATTCAATCCTCTTCTCCACATTTTGCTCTGTTTTTGTTCTTCTCCTTGGAGCTTTCATTTCTCCAGGTTTTCACCGATTGAAGAATCGATTATGATTTTGGGTCAAACTTTCTAGGGTTTTTAATTGTACCTTGTGGTGAAGCAGGATTGAAGTCGGGAAATATGGCAATGGCGATTGAAGATGAAGATTCCATGGCTCTTTTACCGTTTGGTTCTGTCTCTGGCGTCGGAAGCTTCATCCAACTTCCTCAATGCGGTGGCCCTCGCCGGACTGGTAACTCAGCTTCCCCATCACTTCTTGGTTTTTGA

mRNA sequence

ATGGCTTCTTATTCAATCCTCTTCTCCACATTTTGCTCTGTTTTTGTTCTTCTCCTTGGAGCTTTCATTTCTCCAGGATTGAAGTCGGGAAATATGGCAATGGCGATTGAAGATGAAGATTCCATGGCTCTTTTACCGTTTGGTTCTGTCTCTGGCGTCGGAAGCTTCATCCAACTTCCTCAATGCGGTGGCCCTCGCCGGACTGGTAACTCAGCTTCCCCATCACTTCTTGGTTTTTGA

Coding sequence (CDS)

ATGGCTTCTTATTCAATCCTCTTCTCCACATTTTGCTCTGTTTTTGTTCTTCTCCTTGGAGCTTTCATTTCTCCAGGATTGAAGTCGGGAAATATGGCAATGGCGATTGAAGATGAAGATTCCATGGCTCTTTTACCGTTTGGTTCTGTCTCTGGCGTCGGAAGCTTCATCCAACTTCCTCAATGCGGTGGCCCTCGCCGGACTGGTAACTCAGCTTCCCCATCACTTCTTGGTTTTTGA

Protein sequence

MASYSILFSTFCSVFVLLLGAFISPGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQLPQCGGPRRTGNSASPSLLGF
Homology
[Close]
BLAST of CaUC03G062020 vs. NCBI nr
Match: XP_038880622.1 (glucan endo-1,3-beta-glucosidase-like [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21
Identity = 58/68 (85.29%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  MASYSILFSTFCSVFVLLLGAFISPGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQLP 60
          MAS SI FSTFCSVFVLLLGAFI P  KSGNM MAIEDEDSMALLPFGS SG GSFI+L 
Sbjct: 1  MASSSIFFSTFCSVFVLLLGAFIPPESKSGNMVMAIEDEDSMALLPFGSASGAGSFIRLS 60

Query: 61 QCGGPRRT 69
          QCGGPRRT
Sbjct: 61 QCGGPRRT 68

[Close]
BLAST of CaUC03G062020 vs. NCBI nr
Match: XP_022154361.1 (glucan endo-1,3-beta-glucosidase-like isoform X3 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 8.2e-16
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 9  STFCSV-FVLLLGAFISPGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQLPQCGGPRR 68
          S FCS   +LLLGAFISPG KSGN+A+AIE+ DSMALLPFGS SG+GSF++LPQCGGPR 
Sbjct: 11 SLFCSASLLLLLGAFISPGSKSGNVALAIEEVDSMALLPFGSASGIGSFVRLPQCGGPRP 70

[Close]
BLAST of CaUC03G062020 vs. NCBI nr
Match: XP_022154359.1 (glucan endo-1,3-beta-glucosidase-like isoform X1 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 8.2e-16
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 9  STFCSV-FVLLLGAFISPGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQLPQCGGPRR 68
          S FCS   +LLLGAFISPG KSGN+A+AIE+ DSMALLPFGS SG+GSF++LPQCGGPR 
Sbjct: 11 SLFCSASLLLLLGAFISPGSKSGNVALAIEEVDSMALLPFGSASGIGSFVRLPQCGGPRP 70

[Close]
BLAST of CaUC03G062020 vs. NCBI nr
Match: XP_022988224.1 (uncharacterized protein LOC111485526 isoform X2 [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 4.1e-15
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 5  SILFSTFCSVFVLLLGAFIS------PGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQ 64
          S +FS F SVFVLLL + IS       GLKSGNM MAIED DSMALLPFGS S +GSF +
Sbjct: 3  SSIFSMFRSVFVLLLASLISLVFHRFIGLKSGNMVMAIEDVDSMALLPFGSASRIGSFFR 62

Query: 65 LPQCGGPRRTGNSAS 74
          LPQCGGPRRTG  +S
Sbjct: 63 LPQCGGPRRTGLKSS 77

[Close]
BLAST of CaUC03G062020 vs. NCBI nr
Match: XP_004139045.1 (glucan endo-1,3-beta-glucosidase [Cucumis sativus] >KAE8653516.1 hypothetical protein Csa_006933 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 9.1e-15
Identity = 55/77 (71.43%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 1  MASYSILFSTFCSVFVLLLGAFISP------GLKSGNMAMA--IEDEDSMALLPF-GSVS 60
          MAS SI FS+F  V VLLLG  ISP      GLK GNMAMA  IEDEDSMALLPF GS S
Sbjct: 1  MASSSIFFSSFSFVLVLLLGVLISPGFNRLVGLKLGNMAMAMTIEDEDSMALLPFGGSAS 60

Query: 61 GVGSFIQLPQCGGPRRT 69
           VG FI+LPQCGGPRRT
Sbjct: 61 SVGRFIRLPQCGGPRRT 77

[Close]
BLAST of CaUC03G062020 vs. ExPASy TrEMBL
Match: A0A6J1DLU4 ((1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021643 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 9  STFCSV-FVLLLGAFISPGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQLPQCGGPRR 68
          S FCS   +LLLGAFISPG KSGN+A+AIE+ DSMALLPFGS SG+GSF++LPQCGGPR 
Sbjct: 11 SLFCSASLLLLLGAFISPGSKSGNVALAIEEVDSMALLPFGSASGIGSFVRLPQCGGPRP 70

[Close]
BLAST of CaUC03G062020 vs. ExPASy TrEMBL
Match: A0A6J1DNH1 ((1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021643 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-16
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 0 

Query: 9  STFCSV-FVLLLGAFISPGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQLPQCGGPRR 68
          S FCS   +LLLGAFISPG KSGN+A+AIE+ DSMALLPFGS SG+GSF++LPQCGGPR 
Sbjct: 11 SLFCSASLLLLLGAFISPGSKSGNVALAIEEVDSMALLPFGSASGIGSFVRLPQCGGPRP 70

[Close]
BLAST of CaUC03G062020 vs. ExPASy TrEMBL
Match: A0A6J1JKZ2 (uncharacterized protein LOC111485526 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485526 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 5  SILFSTFCSVFVLLLGAFIS------PGLKSGNMAMAIEDEDSMALLPFGSVSGVGSFIQ 64
          S +FS F SVFVLLL + IS       GLKSGNM MAIED DSMALLPFGS S +GSF +
Sbjct: 3  SSIFSMFRSVFVLLLASLISLVFHRFIGLKSGNMVMAIEDVDSMALLPFGSASRIGSFFR 62

Query: 65 LPQCGGPRRTGNSAS 74
          LPQCGGPRRTG  +S
Sbjct: 63 LPQCGGPRRTGLKSS 77

[Close]
BLAST of CaUC03G062020 vs. ExPASy TrEMBL
Match: A0A6J1DNI9 ((1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021658 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-14
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 0 

Query: 5  SILFSTFCSVFVLLLGAFISPGL-----KSGN----MAMAIEDEDSMALLPFGSVSGVGS 64
          S LFSTFCS+ +LLLGA IS G      KSGN    MAMAI++ DSMALLP GSVSG+GS
Sbjct: 3  SSLFSTFCSLSLLLLGALISAGFRIIGSKSGNMAMAMAMAIDEVDSMALLPLGSVSGIGS 62

Query: 65 FIQLPQCGGPRRT 69
          FI+LPQCGGPR T
Sbjct: 63 FIRLPQCGGPRPT 75

[Close]
BLAST of CaUC03G062020 vs. ExPASy TrEMBL
Match: A0A6J1DLI3 ((1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021653 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-14
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 5  SILFSTFCSVFVLLLGAFISP-----GLKSGNMAM--AIEDEDSMALLPFGSVSGVGSFI 64
          S +FS FCSV +LLLGA IS      GLKSGNMAM  AIE+ DSMALLPFGS SG+ SF+
Sbjct: 3  SSIFSKFCSVSLLLLGALISAGFRIFGLKSGNMAMALAIEEVDSMALLPFGSASGIDSFV 62

Query: 65 QLPQCGGPRRT 69
          +LPQCGGPR T
Sbjct: 63 RLPQCGGPRPT 73

The following BLAST results are available for this feature:
BLAST of CaUC03G062020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038880622.11.0e-2185.29glucan endo-1,3-beta-glucosidase-like [Benincasa hispida][more]
XP_022154361.18.2e-1675.41glucan endo-1,3-beta-glucosidase-like isoform X3 [Momordica charantia][more]
XP_022154359.18.2e-1675.41glucan endo-1,3-beta-glucosidase-like isoform X1 [Momordica charantia][more]
XP_022988224.14.1e-1568.00uncharacterized protein LOC111485526 isoform X2 [Cucurbita maxima][more]
XP_004139045.19.1e-1571.43glucan endo-1,3-beta-glucosidase [Cucumis sativus] >KAE8653516.1 hypothetical pr... [more]
BLAST of CaUC03G062020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC03G062020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DLU44.0e-1675.41(1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021643 ... [more]
A0A6J1DNH14.0e-1675.41(1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021643 ... [more]
A0A6J1JKZ22.0e-1568.00uncharacterized protein LOC111485526 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1DNI91.7e-1468.49(1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021658 ... [more]
A0A6J1DLI32.9e-1469.01(1->3)-beta-glucan endohydrolase OS=Momordica charantia OX=3673 GN=LOC111021653 ... [more]
BLAST of CaUC03G062020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G062020.1CaUC03G062020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0042973 glucan endo-1,3-beta-D-glucosidase activity