CaUC03G060550 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G060550
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionGag-pol polyprotein
LocationCiama_Chr03: 21231642 .. 21235965 (+)
RNA-Seq ExpressionCaUC03G060550
SyntenyCaUC03G060550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTGATACGATGCAACGTATTAAACTTATATTGTATATCTTTTGGATTGAAACAATCTTTACTAATTGTCAAATTTCCAATTGTGTTGCTTTTAGACCTCAGTATGTGTGCCCGATTTATGAAATATGGATGAGGAGAAAATCTAATAATGTCAAATATTTCCATATATTTGGCAACACATGTTATATTCTGAAAGATGTTAATGACACAGTTTTTAAAGAGATGACTCAGAAGATGGTGGAACTTCTTATCGAACACATGTAGACTACATATGAAATGAGAATTTACTTATAGGAACTAAAGATATTTGATCAAGAAAAGTCAAAGTGGGTCAAGTTAGCTTCTATTAGCAGAATAATCTCGTTTGTGATTCTGAAAAATGTCAAGGTACAAACTCATCTAAAAGTAAAATCGTTGTGTGAAAAAAATAGTGAAGAAGAAGAAAGTTTTCATGAAGAATGCTTCATCTCCGTGTGTCATTGCTTATGATGTTTGAGTGCCTTGCCTTTCCTTCTCTCTCCATGGTGTCGTTAGTGTGAATTCCTGTGTTAACAAGAAGAGAATTGAGTCATAAGAAAATTGGGGAGCAAATGTGTGATGTTAGACATGTTATTATGATAATGGAAGACCTTACATGTCATGTCACTGAGTCCACCAGCTATGTCTCTATAGATACTTTAAATCAATTCACTGCCTATTGACATGCGTCCCGTTCCCACTTACTATAGACACTTTCCCCATCCACCTTGTTATTGACCCATGCAAACACTTTCTGAAAGGAGACTGTGCCCAAGGCAACACGAAGCCGAGCATGGATGTCACGTTGTGAATATAGGGACGTAAGAGCAAAACTTGATTTAAATATCTCGTTTTGTAATTTTCCTCCCACTAAAGTGTCCTAACGTTTTAGGGTTTTGTTATACTTAGTTAAATTCTGTCTAATTAATATATCTAAGTTCATGCCTATTATAACTCTTATAAAGGTCTTAAAATTAGGTGAATTAAACAATTCAATTAAACTAGTGACAATGCATGCTAACATTAAACTATGACTAATTCAACTCAGGTTTTGGGTCAGCTCCCAGGTAGGAGGTGTTTCGTTAACCGTCAACTTAAATACCCCCAGCCTTAGACAGAACTTTACCAGTATAGTTCCTTTATAATCATAGTAATGTTTTTCCTACTTAATTCATTCAAACTATTTTAATACTAAGTATGGAAATTATTCTAATCCTATTAGAAAATGATCTCATGTCTAATTCATTATAAACATTTTTAAAATTAATTGATTAACCCTATGATCATATGTTTGCATGCAATTCTTGATTATAGATTGACAGTTTCTAATCACTAATTTTAAAACTATTTTCAAATTTTGATGATTAGCCCTATAATCATGTTGTTCTATGGTTTTAATTAATTAACAACCATATTCTAATTAATTAACAAACCATACAATATGCATTGCACGAATTTAATATAACATCTATATTAAATCTATGGATGTTTCAGGCTCAATGCTTCTTCGATTTTCATATTTAATTAACATACCTATTATATTAAAACCAATCATGAAAATCAATCAAAAGTGTTGAACACATTGCATTAAATATAACTATTTATATTTAATCTATGTAATAACATGCTTTGTGCTTCATTAATTTCATCAATTTAACATAACACTTATATTAAATAAAACATGAAATTAAATCATCATGCATAAAACTATACATTATAACTCTTATAATATATATCATGCATGAACATCTTAAACTAAGGTGGGATTATATCTAAATGACATCCATAAAGCATTTAAATAGCAAATGAACCGGTTAATTGGCCCCTAGGATAAAATTAAAACATCAAATTACATTAATTTTACAAAATTTATCCTAAAATGACTCCAGTCACTCTAGAACCGGACCTGAAAAGCTCGAACTGGTTGAAAAATGCTCGAATCGTGCTAAAACCACTCAAAATTGGTCAAAACTGCTCAAACTAGACCAGGAAACAGCTGAACCAACCTTGAATCGATCAAACCCCTCAAGCCAGTCAATGAACTGGAAAAACAACACAAATCGCGCCTCCCCTCGGACCGAACCACCTAAACCGTGCAAACCGCACATTAGGGCTAACATCAGCCCTCGCGTGCTATTGACATTAGCGTTGCGTGATTTTTTTTTTCGATTTTCATCCTCTAGCCTGTAGTTCCAGCCTTTATTTTTCGCCGTTATTGGTCAAAATTGGTGCTGAACTTCATCGATCTTTAACCTAATTCTAGACTGGGATATACAGACTCAACTTACAATTAATTGCTCAAAACGCAGGGGCCCTTACATGATCAAATCATATAAAAAAATTATAAATCTATAGCCAATTAACCTAAACAATCCAATGCAAACCATACATTCAAAATGCAATTAATCTCACCTATGAACTAAATGCAAATTCCAATCTAAATTAAAAAGGACTGGCCTAGCTCTGATACCAATTATAGGGTTGAAATCCCCACGCAGCAGAAGATTTTCAAAGAACGAAACACTATTTTTTAATTTAGATAAAAAAAAAGAAAAAAAAAAAAAAAAAACCAGTACATTTGACATATAATAATAATGTTATAGAGACATTCTACTGCAAACATAGGCTAAACATACTATGAAAAATTAAATATTCTTTCTATAATAAAATTACAAAGAAGAAAAGACCATACCTTCGTTGTGACTCACGTGGATTTTCACCAACTCATTTGGGAAAATATTTCTTCTTTTCACAATCTTTGCAAATTGCGCAAGAACACCACCACTTGGATTCAATCTCTTTTGGGAAAGATGAGGCAAGATGGTGGGATTCTAATTTGTTTTTGGGAAATTCTACAGAGAGTTATTGGGAAAGATGAAAGAACCTCTCTTGGAAATCTATTTCCTTTGTATCACGCAAAAGGGAGGAAAAAGCCAAATATTTTCCTTCTTCCCTTTCGTTAGGTGTCGAAAATATGTAGAAAAAACTATCGTGGACTCATACCATGTATAATAACTGAAGTATTAGTTATAATTATTTAATCAATCAAATCCAATTTAATTGATTAATTTATTTAAATCATATTTAAATAAATATCCCTCACATAAGCTATAGTTTTAATTCAATCAATTTAATTAAATCAAATTTAATCAAATTAATTAACCAATTAATTAATCATTAAATTAAACATGTCCCCTACACGAACACATTGGATCATTGCGTTTGTATCAAATACAAAGTGTCCCCATCCATAGTCACTAGGATAAGGTACCCAACCTTATCTCTATACTATAGACCCTTTAGGCTATATATTAAACACTGATCCCCGTATATCTCTACATACTATTCAAGACTCATTCAATGGCCTAGGATGTTAGTTTGTTAGATTAGGGTTATTTAGGCAAGATAAACATAATATAAGCAATGACACTTTATTGGAAAAAACATCAATAACATTTTATTAATATTCAATCAAATGTTACATTTATTATCTACGAGTTTTAGGGCATAAAACCCAACAATCAAAACAAATGTGCAAAATATAAAAGAACACCTTAGGACACATAAGTCTCTTGACCTTAAAAGAAGATATTGATAATGGTTCTGCTGGTATTGATTGTGTTTCTGAAGTGAATAAAGTTTTTATTGTTGCTTCAGCTTGTCAGTTGGATGTTGTTTCTAATAATGTGTTAGAATATGCCAATGCTACTGCTATAGTGTTTGCTAGTATTGCTAATACAAATCATTCTGTTCTTTTAGATGTGGCTACTAATGGTTAAGATGCTAGTAAAAATATTGTTGTTGAAAATGTTGACAAACTTGTCTCAAATATTGGTCTGCATGATGGTGTAGATAAGTCTACTATTAACTAAGAATAAACTAAGGTTTTCTGAAAATATTGTTCTTGTTGTTTTTGGGAATGTGGCTTGTGATTCCATTGAAGTTAAGTGTGCTTATATTGTTGCTTACGGTAAGATGGTTGTTGTTTCAAAAGATATTTGTGAAACTATTGATGCTTTTGTCTTAGTTTATACTTGTATTGATACTGCAAATACCCTGCTAAGTTAGAGTTGTCTAGCTGATATGTCTATTGTGTGTGCTAAGAATCAAGTTATTGGGAATGTTCCTTTTGATGTTTATTTTAGGTCTAATGCCTCTGCTGATTCGGAAGATCATAGTTTTGTTAATCCTAATGCTAGAGAAAGTGTTGGAGTTGGGGATGTGCATCCAATTGTTGAGGACATGTCTAAAGATGGTGGGGGTGAAAGATCGAGAGTTGAAAAGAGCTATGAGGATATGA

mRNA sequence

ATGGCTCTTGATACGATGCAACGTATTAAACTTATATTGTATATCTTTTGGATTGAAACAATCTTTACTAATTGTCAAATTTCCAATTGTGTTGCTTTTAGACCTCAGTATGTGTGCCCGATTTATGAAATATGGATGAGGAGAAAATCTAATAATGTCAAATATTTCCATATATTTGGCAACACATGTTATATTCTGAAAGATGTTAATGACACAGTTTTTAAAGAGATGACTCAGAAGATGGTGGAACTTCTTATCGAACACATAATAATCTCGTTTGTGATTCTGAAAAATGTCAAGATAAGTCTACTATTAACTAAGAATAAACTAAGGTTTTCTGAAAATATTGTTCTTGTTGTTTTTGGGAATGTGGCTTGTGATTCCATTGAAGTTAAGTGTGCTTATATTGTTGCTTACGGTCTAATGCCTCTGCTGATTCGGAAGATCATAGTTTTGTTAATCCTAATGCTAGAGAAAGTGTTGGAGTTGGGGATGTGCATCCAATTGTTGAGGACATGTCTAAAGATGGTGGGGGTGAAAGATCGAGAGTTGAAAAGAGCTATGAGGATATGA

Coding sequence (CDS)

ATGGCTCTTGATACGATGCAACGTATTAAACTTATATTGTATATCTTTTGGATTGAAACAATCTTTACTAATTGTCAAATTTCCAATTGTGTTGCTTTTAGACCTCAGTATGTGTGCCCGATTTATGAAATATGGATGAGGAGAAAATCTAATAATGTCAAATATTTCCATATATTTGGCAACACATGTTATATTCTGAAAGATGTTAATGACACAGTTTTTAAAGAGATGACTCAGAAGATGGTGGAACTTCTTATCGAACACATAATAATCTCGTTTGTGATTCTGAAAAATGTCAAGATAAGTCTACTATTAACTAAGAATAAACTAAGGTTTTCTGAAAATATTGTTCTTGTTGTTTTTGGGAATGTGGCTTGTGATTCCATTGAAGTTAAGTGTGCTTATATTGTTGCTTACGGTCTAATGCCTCTGCTGATTCGGAAGATCATAGTTTTGTTAATCCTAATGCTAGAGAAAGTGTTGGAGTTGGGGATGTGCATCCAATTGTTGAGGACATGTCTAAAGATGGTGGGGGTGAAAGATCGAGAGTTGAAAAGAGCTATGAGGATATGA

Protein sequence

MALDTMQRIKLILYIFWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKDVNDTVFKEMTQKMVELLIEHIIISFVILKNVKISLLLTKNKLRFSENIVLVVFGNVACDSIEVKCAYIVAYGLMPLLIRKIIVLLILMLEKVLELGMCIQLLRTCLKMVGVKDRELKRAMRI
Homology
[Close]
BLAST of CaUC03G060550 vs. NCBI nr
Match: KAA0048721.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-06
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 16  FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
           FW E + T C I N V  RP+     YE+W  RK  NVKYFHIFG TC+IL D
Sbjct: 388 FWAEALNTACHIHNRVILRPRTTTTSYELWKGRKP-NVKYFHIFGGTCFILSD 439

[Close]
BLAST of CaUC03G060550 vs. NCBI nr
Match: PNX92161.1 (retrotransposon-related protein, partial [Trifolium pratense])

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-06
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0 

Query: 6   MQRIKLILYIFWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYI 65
           M   K + Y FW E + T C I N V  R    C +YEIW R K  NV YFHIFG+ CYI
Sbjct: 599 MLHAKQMPYHFWAEAMNTACYIHNRVTIRKGTSCTLYEIW-RGKKPNVSYFHIFGSKCYI 658

Query: 66  LKD 69
           L D
Sbjct: 659 LLD 660

[Close]
BLAST of CaUC03G060550 vs. NCBI nr
Match: TYK22846.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 16 FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
          FW E I T C I N +  R +    +YE+W  RK  NVKYFHIFG+TCYIL D
Sbjct: 27 FWAEAINTACHIHNRITTRSETNVTLYELWKGRKP-NVKYFHIFGSTCYILVD 78

[Close]
BLAST of CaUC03G060550 vs. NCBI nr
Match: KAA0026048.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 16 FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
          FW E I T C I N +  R +    +YE+W  RK  NVKYFHIFG+TCYIL D
Sbjct: 27 FWAEAINTACHIHNRITTRSETNVTLYELWKGRKP-NVKYFHIFGSTCYILVD 78

[Close]
BLAST of CaUC03G060550 vs. NCBI nr
Match: KAA0059760.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ99774.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 16  FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
           FW E + T C I N V  R +     YE+W  RK  NVKYFHIFG+TC+IL D
Sbjct: 356 FWAEALNTTCHIHNRVILRSRTTTTSYELWKGRKP-NVKYFHIFGSTCFILSD 407

[Close]
BLAST of CaUC03G060550 vs. ExPASy TrEMBL
Match: A0A5D3C9Q6 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00180 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 16  FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
           FW E + T C I N V  RP+     YE+W  RK  NVKYFHIFG TC+IL D
Sbjct: 388 FWAEALNTACHIHNRVILRPRTTTTSYELWKGRKP-NVKYFHIFGGTCFILSD 439

[Close]
BLAST of CaUC03G060550 vs. ExPASy TrEMBL
Match: A0A2K3MMX0 (Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g015294 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-06
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 0 

Query: 6   MQRIKLILYIFWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYI 65
           M   K + Y FW E + T C I N V  R    C +YEIW R K  NV YFHIFG+ CYI
Sbjct: 599 MLHAKQMPYHFWAEAMNTACYIHNRVTIRKGTSCTLYEIW-RGKKPNVSYFHIFGSKCYI 658

Query: 66  LKD 69
           L D
Sbjct: 659 LLD 660

[Close]
BLAST of CaUC03G060550 vs. ExPASy TrEMBL
Match: A0A5A7SIP3 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00350 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-06
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 16 FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
          FW E I T C I N +  R +    +YE+W  RK  NVKYFHIFG+TCYIL D
Sbjct: 27 FWAEAINTACHIHNRITTRSETNVTLYELWKGRKP-NVKYFHIFGSTCYILVD 78

[Close]
BLAST of CaUC03G060550 vs. ExPASy TrEMBL
Match: A0A5D3DGW5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00300 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-06
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 16 FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
          FW E I T C I N +  R +    +YE+W  RK  NVKYFHIFG+TCYIL D
Sbjct: 27 FWAEAINTACHIHNRITTRSETNVTLYELWKGRKP-NVKYFHIFGSTCYILVD 78

[Close]
BLAST of CaUC03G060550 vs. ExPASy TrEMBL
Match: A0A5D3CM30 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001750 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.0e-06
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 0 

Query: 16  FWIETIFTNCQISNCVAFRPQYVCPIYEIWMRRKSNNVKYFHIFGNTCYILKD 69
           FW E +   C I N V  R      +YE+W  RK  NVKYFH+FG+TCYIL D
Sbjct: 190 FWAEAVNIACHIHNRVTIRTGMTVTLYELWKERKP-NVKYFHVFGSTCYILAD 241

The following BLAST results are available for this feature:
BLAST of CaUC03G060550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048721.14.9e-0654.72gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07908.1 gag-pol polyprotein [... [more]
PNX92161.16.4e-0650.79retrotransposon-related protein, partial [Trifolium pratense][more]
TYK22846.11.1e-0554.72gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0026048.11.1e-0554.72gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0059760.11.9e-0552.83gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ99774.1 gag-pol polyprotein [... [more]
BLAST of CaUC03G060550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC03G060550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C9Q62.4e-0654.72Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G... [more]
A0A2K3MMX03.1e-0650.79Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L19... [more]
A0A5A7SIP35.3e-0654.72Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G... [more]
A0A5D3DGW55.3e-0654.72Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G... [more]
A0A5D3CM309.0e-0650.94Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G... [more]
BLAST of CaUC03G060550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G060550.1CaUC03G060550.1mRNA