CaUC03G059990 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G059990
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionProtein TIC 20
LocationCiama_Chr03: 18405792 .. 18409497 (+)
RNA-Seq ExpressionCaUC03G059990
SyntenyCaUC03G059990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGTAAGGAGATGTATATAAACGTTTAGAACGTTTTTAAATTTAGTTTTTTCAATAAAGCAACTTTTGAGAGTTTATAGGTATTTTGCAACGAGGTAGTAACAATTTATGTTCACATATTAACGGTAAGAGTATTTTTTTTTTTAATTTCAAATATATTTCTAAAAAAATAAAACTAACCATTTCTATCCAAAATTAGCACTAGGATGTTTTTGAACTATTTTTTAAAGTTTAAAGATATTTTTTAAAATTATGAAAATTCAAAAAAGTATTTTTGACCTAAAGTACAAAACCTTTGATATAATTTAGGTTTAGGTATTTCCATTTGATAAAGAGATATTTTTAAAATTAGAAAAATAGTTGAAAATAATTACAAATAATTACAAATATAGCAAAATACACGTATAAATGTCGCAGTCTATCCCAGATATAAAATTTTGTTATATCTGTGTTTAATAATTTTCATTTTGACTATTTTTTAGCTTGAATTTCACTATAAGCCCTCGGAAAAGAGCGTCGTTTCATCTTCATCGCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCACATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGGTTTGGGGCCACAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTTTATAGTCTGGTTTCTTGCCTTCTGGGTCGAACCCCTCACTTGCCCCTTGTTGCCGATGCTGCTGGCCGGCAGATTTAGCTTCAGGTTTGTTCTTCAACCTTTCTTCTACTTTGGGAATCTTTGGATCCAGGAGTTTGTAATTTAGGGTTTTGATTTTCCTCTGAAATTAGTGAAATTCTGAAAGTTTTGGGAGAAATCTGAATCTAATCAATGGAGGTTGGTCTGTACACCTTTAGAAGAGATGTATGAGAGAGGAATTGGAATGTGTATGTTGATTGTGCATTTTTTGGTTATAAGCGTTCTTTGCAGCTACACTGAATAAGTTTATGAAGTATTCGTGCAAGGGAAACTGTAGATAATGAGACGATTTAAGTACTATTTGGTCCACCCTTTCTTATCAAGCTTTGATTTTGGTTACATACTTTCAAATTTTGTTCATTTTGTTATTTTGGTCATTTGTTTTCTTTTTTTTTTATTTATTTATTTTTTTTATCAGCACACTTTGTTAACTAAATTAATTAAAATATAACTTTTTAAGTTTGCATCAAAGGTTTTCTATTGGATTTTAAAATTTTGCAATAAGTATAGAGATCAAAAGACATTCTTTTGAGAATGTAGCAAATGTACAAGAATCAAATAAGCAAATGTTGAAAGTGCAGGGACACAAAATAAACCAAAGTCACAAGTTCATAGACTAAATCATGTTTTGTTTAGGCATAAGATTTATTATTGCAAATATATGTGAGGCAATCTTAAGGGGTATTTGTATGGATGACCTTAATATGGAGGCCCAAATGAAATTTGGTCAATGATTCAAATTCACACGAAAATTAGCCTTTTGCTTGTGTCACCCATGTGTGAAATTACCAATTTATTCCCGAAACGCGCGCGAGGGCTGCAGACAACCACAGATTATCATTTCTACCTCTCGCTCAACTTTCTTGATCTCATTTCTTCCTCTTGCTTGTTATCAAAATTTCACGCGCGTTTTGATTTCTGCTGCTAATTAATGTCCCTGTAGGAATTTGCTTGAAAATGCAAAAAACTCTGGTTCTTTCAAATCAAACTAAGTAGTAGTGTTTCTTAAGTTAAGTATATGCTATTTTAAATAAAGAACAAAATGTGGAAGACAAGAAACCCATTAGACCAGACTCGTTGACTGTGGACAACCCATCTTCTAACGTTTTAGAGGCTATTGAATCGTCATATACATTCTGTTACTCATGGAAGCAAGTGAATGTAAACCTTTTCTTCGTTTATTGTTTACCACGTAATGAGATACAAGAAAATGATAGCCAAAGTGATAGAAAATATAGGTAAAAGGAATAAATGAGAGGAAGAAAGTGGAGCGAGAGAAACATGAGTAATCGTGTAAACGAGAGAAGAAAGAAAGCGGGAGACAAAAATGAGAGGAAGAAACGAGAGCGAGAGTTTTATAAAATCGAAATTTATAAATTTTTTTTCTCATGCTTCAATTTTTACGTACAGAGTAGCAAAGTATGGAAGAGAAGTAGCTTTTCATTCGGTATGGTGGTGTATGGGACAACAAAGAAGAATGCTACAAGGGAGGTCGTACGAAGGGCATCATGGTGCCAAACACATTAAATTATAGTCAACTGAGTGCTGCATTATACAAACTTTCAAATATCAGTTCTTCAGAGTTTAACATCATAATGAGGGTGAAATACAAGTTAGATTGTGAACGTCCTCTAGTTTGCATCGATGTTAGATTTCTACTCTAAAAAATGGATCGTAACAGACCTCTAATATTTGTCAATTTAAGTTCAGAATCAAGAGCAAACATTTGGAGGGACATTTGCAAAACATAAACCCATGTTGGCATCAGGTAGAATGATGAGTTGGATGTTTATTCCATTTGTAGTCTTTATGGAAAATGACAACTTAAACTCATGGATAGATAGGGAATAATATTTCGGCCAGAAGCTAGGCGTGCTAAAACCATTAGTGATGCTATTATTGAGAGTTTGTCACCTCATCACACTTAATATCCAACTGCATGCACTAGAGTGGGTGATCCTTCTATTGATGATGATACTGTGTTGGGAGTACCTCACCCCATCCCAATACATATCCAACTACATGCACCAGAGTGGGTGATCCTTCTGTGTTGAACGTACCTTAGCAAAATCGAATTATATGCAATGATTTTGGGCATTTCGTTGGAAACACCCCTCTACAAATGGAGACCTCGCAACAGACAGAGACAGTAGTACAATGTGGTCCCTTCACGAGACAGACAGAAGCAGGACCATCTGTGATAACTACAAGAATAGGAGATATCATTATGCAATCGGTGTCGGTGGTAGTAATGGTGGTGGAAGTGGAATTAGCTTGGGATGATCAAGTATTATAACGGTAGGATTAGTGGTAGTAATGGTGTTGGTAGTGGGAAGCTCAATGGTGGTGGTGCTAGGAAGCTTGGTGGTGGTGCTAGGAATCTCATTAGTAGGGGTGGTAGTAGGAAGCTCGGTGGTGGTGGTGATGGTGGTGGGAAGCTCGATGGTGGTGGTAGGAATCTCGGTAGTAGGGGTGGTAATAGGAGCTCGGTGGTGGTGGGCTCCTCATGA

mRNA sequence

ATGGAAGAACTTGAATTTCACTATAAGCCCTCGGAAAAGAGCGTCGTTTCATCTTCATCGCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCACATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGCTTGGGATGATCAAGTATTATAACGGTAGGATTAGTGGTAGTAATGGTGTTGGTAGTGGGAAGCTCAATGGTGGTGGTGCTAGGAAGCTTGGTGGTGGTGCTAGGAATCTCATTAGTAGGGGTGGTAGTAGGAAGCTCGGTGGTGGTGGTGATGGTGGTGGGAAGCTCGATGGTGGTGGTAGGAATCTCGGTAGTAGGGGTGGTAATAGGAGCTCGGTGGTGGTGGGCTCCTCATGA

Coding sequence (CDS)

ATGGAAGAACTTGAATTTCACTATAAGCCCTCGGAAAAGAGCGTCGTTTCATCTTCATCGCCTCACTCTCGACGCCTCTGCCACAAAGAAATGGCTTCCAGTTCCATCCCTCTCCTCAATCTCTCCGCCAAATCTGCCATTAAAGCCGCTCTAATCCCTCACTCCTCCGCCATCAAATCCCGCCACCGTTCTTCTCTCCCCTTTCTCCCCTCAAAACCCGCAAAATCCGCCGTCATTCACATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTGCCTACACTCTCCCCTTCTTCAACTCCCTTCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCGGTCCTCGGCCTCGCCATAGAGCCGCTCCTCCCGATTCTAGGTCTTTATCGCTCGATCCCGCACGCGAGCTTTGTCGCCTTCTTCGCGCTTTATTTGGGCGTGGTCCGAAATCCTAGCTTCAGCCACTACGTACGGTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGGTACAGAGGATTCTGAGTCCCGGTCGGAGCGGATTAGGGTTCAAGATTATGCTTGGGATGATCAAGTATTATAACGGTAGGATTAGTGGTAGTAATGGTGTTGGTAGTGGGAAGCTCAATGGTGGTGGTGCTAGGAAGCTTGGTGGTGGTGCTAGGAATCTCATTAGTAGGGGTGGTAGTAGGAAGCTCGGTGGTGGTGGTGATGGTGGTGGGAAGCTCGATGGTGGTGGTAGGAATCTCGGTAGTAGGGGTGGTAATAGGAGCTCGGTGGTGGTGGGCTCCTCATGA

Protein sequence

MEELEFHYKPSEKSVVSSSSPHSRRLCHKEMASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMLGMIKYYNGRISGSNGVGSGKLNGGGARKLGGGARNLISRGGSRKLGGGGDGGGKLDGGGRNLGSRGGNRSSVVVGSS
Homology
[Close]
BLAST of CaUC03G059990 vs. NCBI nr
Match: XP_038879337.1 (protein TIC 20-II, chloroplastic [Benincasa hispida])

HSP 1 Score: 294.3 bits (752), Expect = 1.1e-75
Identity = 152/168 (90.48%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATD 90
           MASSSIPLLNLS K+A +AALIPHSSAIKSRHRSSLPFLPSKPAKS V  MSYNPTPATD
Sbjct: 1   MASSSIPLLNLSVKTAFRAALIPHSSAIKSRHRSSLPFLPSKPAKSTVFRMSYNPTPATD 60

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           R+ISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPHASFVAFFALYLG
Sbjct: 61  RVISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHASFVAFFALYLG 120

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIML 199
           +VRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR GLGF+IM+
Sbjct: 121 LVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGLGFQIMV 168

[Close]
BLAST of CaUC03G059990 vs. NCBI nr
Match: XP_004139099.1 (protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_006938 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 3.9e-73
Identity = 148/168 (88.10%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATD 90
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   I MSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIML 199
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIM+
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMV 168

[Close]
BLAST of CaUC03G059990 vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >KAA0038239.1 protein TIC 20-II [Cucumis melo var. makuwa] >TYK30638.1 protein TIC 20-II [Cucumis melo var. makuwa])

HSP 1 Score: 282.0 bits (720), Expect = 5.7e-72
Identity = 149/171 (87.13%), Postives = 157/171 (91.81%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIHMSYNPTP 90
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    I MSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 91  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 150
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 151 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIML 199
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIM+
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMV 171

[Close]
BLAST of CaUC03G059990 vs. NCBI nr
Match: XP_022987499.1 (protein TIC 20-II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 280.8 bits (717), Expect = 1.3e-71
Identity = 148/167 (88.62%), Postives = 153/167 (91.62%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATD 90
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPS+PAKS  I MSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIM 198
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPGRSGLGF+IM
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIM 169

[Close]
BLAST of CaUC03G059990 vs. NCBI nr
Match: XP_022960653.1 (protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >KAG6590106.1 Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.0 bits (715), Expect = 2.2e-71
Identity = 148/167 (88.62%), Postives = 153/167 (91.62%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATD 90
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPSKPAKS  I MSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIM 198
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF+IM
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIM 169

[Close]
BLAST of CaUC03G059990 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-42
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = 0 

Query: 71  SKPAKSAVIHMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 130
           S+ A +     SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 131 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 190
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 191 SGLGFKIML 199
            G G K M+
Sbjct: 160 GGFGMKAMM 168

[Close]
BLAST of CaUC03G059990 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.6e-24
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 0 

Query: 88  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 147
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 148 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMLGM 201
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++ +
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSL 170

[Close]
BLAST of CaUC03G059990 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.6e-16
Identity = 40/99 (40.40%), Postives = 64/99 (64.65%), Query Frame = 0 

Query: 90  DRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYL 149
           DR  SA+ Y +P  ++  +G FL  Q+PVL +   P++P+L  Y   P ASF+ F  L++
Sbjct: 11  DRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFIIFIVLFM 70

Query: 150 GVVRNPSFSHYVRFNSMQAVTLDVLL-VVPLLVQRILSP 188
            VVRN + SH++RFN+MQA+ + +LL +  L+V  ++ P
Sbjct: 71  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQP 109

[Close]
BLAST of CaUC03G059990 vs. ExPASy TrEMBL
Match: A0A0A0LXS7 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.9e-73
Identity = 148/168 (88.10%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATD 90
           MAS+SIPLLNLSAK++I+AAL PHSSAIKSRH SSLPFLPSK  K   I MSYNPTPATD
Sbjct: 1   MASTSIPLLNLSAKTSIRAALFPHSSAIKSRHHSSLPFLPSKSPKFTPIRMSYNPTPATD 60

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFALYLG
Sbjct: 61  RLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLG 120

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIML 199
           VVRNPSF+HYVRFNSMQAVTLDVLLVVPLL+QRILSPGRSG+GFKIM+
Sbjct: 121 VVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMV 168

[Close]
BLAST of CaUC03G059990 vs. ExPASy TrEMBL
Match: A0A1S3B9C6 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.8e-72
Identity = 149/171 (87.13%), Postives = 157/171 (91.81%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIHMSYNPTP 90
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    I MSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 91  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 150
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 151 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIML 199
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIM+
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMV 171

[Close]
BLAST of CaUC03G059990 vs. ExPASy TrEMBL
Match: A0A5D3E499 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00600 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.8e-72
Identity = 149/171 (87.13%), Postives = 157/171 (91.81%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSA---VIHMSYNPTP 90
           MAS+SIPLLNLSAK+AI+AAL PHSS IKSRH  SLPFLPSK AKSA    I MSYNPTP
Sbjct: 1   MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTP 60

Query: 91  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 150
           ATDRLISAV+YTLPFFNSLQYGRFLFAQYP LG A EPLLPILGLYRSIPH+SFVAFFAL
Sbjct: 61  ATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFAL 120

Query: 151 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIML 199
           YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLL+QRILSPGR G+GFKIM+
Sbjct: 121 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMV 171

[Close]
BLAST of CaUC03G059990 vs. ExPASy TrEMBL
Match: A0A6J1JJ22 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 6.1e-72
Identity = 148/167 (88.62%), Postives = 153/167 (91.62%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATD 90
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPS+PAKS  I MSYNPTPATD
Sbjct: 3   MASCSIPLLNLSTKPAIKAALIPHYSAIKSRHCFSLPLLPSRPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIM 198
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPGRSGLGF+IM
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGRSGLGFQIM 169

[Close]
BLAST of CaUC03G059990 vs. ExPASy TrEMBL
Match: A0A6J1HBN6 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.0e-71
Identity = 148/167 (88.62%), Postives = 153/167 (91.62%), Query Frame = 0 

Query: 31  MASSSIPLLNLSAKSAIKAALIPHSSAIKSRHRSSLPFLPSKPAKSAVIHMSYNPTPATD 90
           MAS SIPLLNLS K AIKAALIPH SAIKSRH  SLP LPSKPAKS  I MSYNPTPATD
Sbjct: 3   MASCSIPLLNLSIKPAIKAALIPHYSAIKSRHCFSLPLLPSKPAKSPAIRMSYNPTPATD 62

Query: 91  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFALYLG 150
           RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLA EPLLPILGLYRSIPH+SF+AFFA YLG
Sbjct: 63  RLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAFEPLLPILGLYRSIPHSSFIAFFAFYLG 122

Query: 151 VVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIM 198
           VVRNPSFS Y RFNSMQA+TLDVLLVVPLLVQRILSPG+SGLGF+IM
Sbjct: 123 VVRNPSFSRYARFNSMQALTLDVLLVVPLLVQRILSPGQSGLGFQIM 169

[Close]
BLAST of CaUC03G059990 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-43
Identity = 89/129 (68.99%), Postives = 102/129 (79.07%), Query Frame = 0 

Query: 71  SKPAKSAVIHMSYNPTPATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPIL 130
           S+ A +     SY PTPAT+R+IS  +Y LPFFNSLQYGRFLFAQYP LGL  EP+ PIL
Sbjct: 40  SRRATALTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPIL 99

Query: 131 GLYRSIPHASFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGR- 190
            LYRS+P+ASFVAFF LYLGVVRN SFS YVRFN+MQAVTLDVLL VP+L+ RIL PG+ 
Sbjct: 100 NLYRSVPYASFVAFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQG 159

Query: 191 SGLGFKIML 199
            G G K M+
Sbjct: 160 GGFGMKAMM 168

[Close]
BLAST of CaUC03G059990 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-25
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 0 

Query: 88  ATDRLISAVAYTLPFFNSLQYGRFLFAQYPVLGLAIEPLLPILGLYRSIPHASFVAFFAL 147
           A+DR+ISAV Y  PFF+ +QYG+F+  QY    + I+PL P +  ++S P   F+ F  L
Sbjct: 59  ASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITL 118

Query: 148 YLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLVQRILSPGRSGLGFKIMLGM 201
           Y  VVRNP+FS YVRFN+MQA+ LDVLL+ P L++R  +P R G G  +++ +
Sbjct: 119 YFVVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNP-RDGFGLDVVMSL 170

The following BLAST results are available for this feature:
BLAST of CaUC03G059990 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879337.11.1e-7590.48protein TIC 20-II, chloroplastic [Benincasa hispida][more]
XP_004139099.13.9e-7388.10protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 2... [more]
XP_008443678.15.7e-7287.13PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDI... [more]
XP_022987499.11.3e-7188.62protein TIC 20-II, chloroplastic-like [Cucurbita maxima][more]
XP_022960653.12.2e-7188.62protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 prote... [more]
BLAST of CaUC03G059990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O822511.7e-4268.99Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=... [more]
Q9FM674.6e-2447.79Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ... [more]
P733874.6e-1640.40Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ... [more]
BLAST of CaUC03G059990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXS71.9e-7388.10Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1[more]
A0A1S3B9C62.8e-7287.13Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1[more]
A0A5D3E4992.8e-7287.13Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G006... [more]
A0A6J1JJ226.1e-7288.62Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1[more]
A0A6J1HBN61.0e-7188.62Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1[more]
BLAST of CaUC03G059990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47840.11.2e-4368.99Uncharacterised conserved protein ycf60 [more]
AT5G55710.13.3e-2547.79FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 91..200
e-value: 3.1E-30
score: 105.3
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510PROTEIN TIC 20-II, CHLOROPLASTICcoord: 31..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..275
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 31..200

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC03G059990.1CaUC03G059990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane