CaUC03G056880 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G056880
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Basic helix-loop-helix (BHLH) DNA-bindingsuperfamily protein
Location	Ciama_Chr03: 7666292 .. 7668166 (-)
RNA-Seq Expression	CaUC03G056880
Synteny	CaUC03G056880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTAATACGTTAGTCCAATCACCACAGATTCAGCTGATTCCTTCAGATGTCAGCTAAGATGAAGGATTGAGAAGTTGGGATAGGTGAAGTTGTACTGTAAGTTTTAAATGTGGGAAGGCTGTATTGAATGGCTTAGTGGGCACAAAGTTTCTTTAAGAGGAAGGAAAAATACAGTAGCATTGCATTTTGAGGTTGAAAACAATGTGTGACCCATCATCATAATGAGTCCACCATATTGATTTCTGTTATGGTACAAGTGTCTTGATCTGATCTCAAATGGTTGCTGGAGAAAATGGCCAACTCTGCTTCCACTTTGAGTGCCTTTTCCTTCATCTCATTGCATTTTTGTAGTACACGGGTGGTGAAAGTCTATGGCCCACCATTCTTCATCATTTCTTTAACCACTTCTTACTGTTTGCTTATGAGAACACAATTTTGCTTCTAATGTAAATGTGCTTGCTGTGAGTGGGACTTTTCCAACCACACTATCATTTTAACTGCCAACATTGAGTTTTTAGATAAATGTATAAAAGAAAGGGAGGAAGATGAAGTTCTTTAAGTAAATTTCGAAGTTGGTAGAATTGAATTATTGAACACCAACTTATGAAGTCGATTGGCCGAACACCCTTGAAGTTTAAATATAACTGATCTTTATGAGTAGATCAGTTGAAACTGTTTAATGAAGTCTATTTTTGAAAAAAGCCTGATTAAAGTAATCAATAGCTTTGCTTATACTTAGCCACATTATTGGTCTCTAACTATCAACTAGAAACATTGTTGAGACCATGATGTTTTACTTCATGAATATTTAGAGGGATGGTGAAATGAAACTTCATCTATTCAACAGGGCAATGATGACTGATTTGATTGGAAACAAATCTACATAAAGTACTGTTTGATAAATTGATGCCGTATTGAATCAAACTTCCAAAATATTTGTAACTTTGGGTGGCAATGGAAAGAGGCTATCTTAGTTTTAGGATCAAAGTGATGGATTTGGTAACAGACTTCATTTTTGCCAATAAATATTTTTCTATCACAGCAAGGATACAATACAAGTATTTAAAATGAAGAGTAGATTACATGATTAATAGCAACCATTATTTCATAAAATATGGACATGGTTGTGCTATTAAACCTTCAGTTCTCATTCTCAATTAAAGAATCGGTTAACCTTTGAACAAAATTGGGGAACCCATATAAAAAGATTGAGGACTATAAGACAATGGTAAATAGCGTGATTATACGACCGGTACCGAGATGGATATCGGCACAGATACCTCGCTTGCAAAGTTTGAATCTCTGCTAGAAGCTGAGTTATTTGCATAGGCGTAACCAACCCCCAATCCGCCGTAATGCATTGTGACATGCTCACATCTCTGGAATACTCTAGCTAGCGAAGCAGCCTTTCTTCGTGCTCGCTTCGTACCGGTAAATAGGAGTGTTTGGAGCAAGCCAGCCAAAGCGGGAGCCTTGAACACTTGCTCAGTCGTGGCAGCTCCACCACTCCGGCATAACTCGAGCAAAGCTGCTACTGCATTCTCTTTTCCTCTTGGTGTACCACATCGCATCATTGCTATCAATCCTGCCACAGCTCTCTCCTCTTTGGCGACTGCTTCGGCACCAACAGGCTGTCTAACAATCAAGGCCAATGCACCAGCTGCTTCCTCAGCAACACCTTCATTCCCCAATGCTCCTACAAGAGCTGTTACTGCCCCGGCCTCTATCATCCGAACGCAGTTATCCGTGTGGGTTGAGAGATTAAATAAAGCTGTTACAGCATCCTTCTTTCCTCTTGGGGTACCATCTCTCAACAGCCCTGCCAATGCTTCAACTGCACCATCCTCCTCTGCTATTCTCTTCTTGTAG

mRNA sequence

ATGGACGCTAGCGAAGCAGCCTTTCTTCGTGCTCGCTTCGTACCGGTAAATAGGAGTGTTTGGAGCAAGCCAGCCAAAGCGGGAGCCTTGAACACTTGCTCAGTCGTGGCAGCTCCACCACTCCGGCATAACTCGAGCAAAGCTGCTACTGCATTCTCTTTTCCTCTTGGTGTACCACATCGCATCATTGCTATCAATCCTGCCACAGCTCTCTCCTCTTTGGCGACTGCTTCGGCACCAACAGGCTGTCTAACAATCAAGGCCAATGCACCAGCTGCTTCCTCAGCAACACCTTCATTCCCCAATGCTCCTACAAGAGCTGTTACTGCCCCGGCCTCTATCATCCGAACGCAGTTATCCGTGTGGGTTGAGAGATTAAATAAAGCTGTTACAGCATCCTTCTTTCCTCTTGGGGTACCATCTCTCAACAGCCCTGCCAATGCTTCAACTGCACCATCCTCCTCTGCTATTCTCTTCTTGTAG

Coding sequence (CDS)

ATGGACGCTAGCGAAGCAGCCTTTCTTCGTGCTCGCTTCGTACCGGTAAATAGGAGTGTTTGGAGCAAGCCAGCCAAAGCGGGAGCCTTGAACACTTGCTCAGTCGTGGCAGCTCCACCACTCCGGCATAACTCGAGCAAAGCTGCTACTGCATTCTCTTTTCCTCTTGGTGTACCACATCGCATCATTGCTATCAATCCTGCCACAGCTCTCTCCTCTTTGGCGACTGCTTCGGCACCAACAGGCTGTCTAACAATCAAGGCCAATGCACCAGCTGCTTCCTCAGCAACACCTTCATTCCCCAATGCTCCTACAAGAGCTGTTACTGCCCCGGCCTCTATCATCCGAACGCAGTTATCCGTGTGGGTTGAGAGATTAAATAAAGCTGTTACAGCATCCTTCTTTCCTCTTGGGGTACCATCTCTCAACAGCCCTGCCAATGCTTCAACTGCACCATCCTCCTCTGCTATTCTCTTCTTGTAG

Protein sequence

MDASEAAFLRARFVPVNRSVWSKPAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRIIAINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVWVERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL

Homology

[Close]

BLAST of CaUC03G056880 vs. NCBI nr
Match: PON95823.1 (hypothetical protein TorRG33x02_083460 [Trema orientale])

HSP 1 Score: 222.6 bits (566), Expect = 2.4e-54
Identity = 129/158 (81.65%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 3   ASEAAFLRARFVPVNRSVWSKPAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRI 62
           A +AAFL ARFVPVN  VWSKPAKAGAL T S VAAPPLRHNSS AATAFSFPLGVP RI
Sbjct: 57  ARDAAFLLARFVPVNSKVWSKPAKAGALTTFSFVAAPPLRHNSSNAATAFSFPLGVPQRI 116

Query: 63  IAINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVW 122
           I I PATA+SS  TASAP GCLTIKA APAASSATPS P A TRAVTA ASII TQLSV 
Sbjct: 117 IPIKPATAISSFPTASAPIGCLTIKAKAPAASSATPSLPKALTRAVTAFASIILTQLSVC 176

Query: 123 VERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           VERLNKAVTASFFPL VPSL+SPA AS AP SSAI FL
Sbjct: 177 VERLNKAVTASFFPLEVPSLSSPAKASIAPCSSAIRFL 214

[Close]

BLAST of CaUC03G056880 vs. NCBI nr
Match: PON46939.1 (hypothetical protein PanWU01x14_247830 [Parasponia andersonii])

HSP 1 Score: 214.2 bits (544), Expect = 8.5e-52
Identity = 125/158 (79.11%), Postives = 128/158 (81.01%), Query Frame = 0


Query: 3   ASEAAFLRARFVPVNRSVWSKPAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRI 62
           A +AAFL ARFVPVN  VWSKPAKAGAL T S VAAPPLRHNSS AATAFS PLGV  RI
Sbjct: 57  ARDAAFLLARFVPVNSKVWSKPAKAGALTTFSFVAAPPLRHNSSNAATAFSLPLGVAQRI 116

Query: 63  IAINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVW 122
           I I P TA+SS  TASAP GCLTIKA APA SSATPS P A TRAVTA ASII TQLSV 
Sbjct: 117 IPIKPTTAISSFPTASAPIGCLTIKAKAPATSSATPSLPKALTRAVTAFASIILTQLSVC 176

Query: 123 VERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           VERLNKAVTASFFPL VPSL+SPA AS AP SSAI FL
Sbjct: 177 VERLNKAVTASFFPLEVPSLSSPAKASIAPCSSAIRFL 214

[Close]

BLAST of CaUC03G056880 vs. NCBI nr
Match: RDX70342.1 (hypothetical protein CR513_50424, partial [Mucuna pruriens])

HSP 1 Score: 201.8 bits (512), Expect = 4.4e-48
Identity = 114/137 (83.21%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 24  PAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRIIAINPATALSSLATASAPTGC 83
           PA AGA  T SV AAPPLRHNSS AATAFS PLGVP RII INPATA  S  TA APTGC
Sbjct: 40  PANAGAFTTLSVAAAPPLRHNSSNAATAFSLPLGVPQRIIPINPATAACSFTTALAPTGC 99

Query: 84  LTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVWVERLNKAVTASFFPLGVPSLN 143
            TIKANAPAASSATPSFP APTRAVTAPASII TQ SV VERLNKAVTASFFPLGVPS N
Sbjct: 100 RTIKANAPAASSATPSFPKAPTRAVTAPASIILTQFSVCVERLNKAVTASFFPLGVPSCN 159

Query: 144 SPANASTAPSSSAILFL 161
           SPA ASTAP SSAI+FL
Sbjct: 160 SPARASTAPISSAIIFL 176

[Close]

BLAST of CaUC03G056880 vs. NCBI nr
Match: BAU01601.1 (hypothetical protein VIGAN_11086900, partial [Vigna angularis var. angularis])

HSP 1 Score: 138.3 bits (347), Expect = 5.9e-29
Identity = 81/112 (72.32%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 49  ATAFSFPLGVPHRIIAINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAV 108
           ATAFS PLGVP RII I PATA SS  TA AP GC TI   AP ASSATPSFP APT  V
Sbjct: 9   ATAFSLPLGVPQRIIPIKPATAASSFTTALAPIGCRTINTRAPTASSATPSFPKAPTSVV 68

Query: 109 TAPASIIRTQLSVWVERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           TA ASII  Q S  VERLNK VT SFFPLGVPS NSPA AST P SS I+FL
Sbjct: 69  TASASIILPQFSRCVERLNKTVTTSFFPLGVPSRNSPARASTTPISSTIIFL 120

[Close]

BLAST of CaUC03G056880 vs. NCBI nr
Match: CAD1842237.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-28
Identity = 87/157 (55.41%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 4   SEAAFLRARFVPVNRSVWSKPAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRII 63
           S AAF  A FVPV +   S P   G   T  ++  PP RHNS KAATAFSFP G+P  I 
Sbjct: 49  SNAAFRFALFVPVRKMFCSSPQNPGIRATLRIIIDPPRRHNSCKAATAFSFPFGLPLLIS 108

Query: 64  AINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVWV 123
                T LS+  TA A   C    A+APAASSAT SF +AP   VTAP S   TQ S WV
Sbjct: 109 PTRLVTDLSTETTALATLCCFNSSASAPAASSATNSFSSAPANTVTAPNSNKPTQHSGWV 168

Query: 124 ERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           ERL +A+TASF PL VPS N  AN STAP SS ILFL
Sbjct: 169 ERLKRAITASFLPLVVPSFNKLANDSTAPGSSTILFL 205

[Close]

BLAST of CaUC03G056880 vs. ExPASy TrEMBL
Match: A0A2P5FDF3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_083460 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 129/158 (81.65%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 3   ASEAAFLRARFVPVNRSVWSKPAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRI 62
           A +AAFL ARFVPVN  VWSKPAKAGAL T S VAAPPLRHNSS AATAFSFPLGVP RI
Sbjct: 57  ARDAAFLLARFVPVNSKVWSKPAKAGALTTFSFVAAPPLRHNSSNAATAFSFPLGVPQRI 116

Query: 63  IAINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVW 122
           I I PATA+SS  TASAP GCLTIKA APAASSATPS P A TRAVTA ASII TQLSV 
Sbjct: 117 IPIKPATAISSFPTASAPIGCLTIKAKAPAASSATPSLPKALTRAVTAFASIILTQLSVC 176

Query: 123 VERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           VERLNKAVTASFFPL VPSL+SPA AS AP SSAI FL
Sbjct: 177 VERLNKAVTASFFPLEVPSLSSPAKASIAPCSSAIRFL 214

[Close]

BLAST of CaUC03G056880 vs. ExPASy TrEMBL
Match: A0A2P5BDR3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_247830 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.1e-52
Identity = 125/158 (79.11%), Postives = 128/158 (81.01%), Query Frame = 0


Query: 3   ASEAAFLRARFVPVNRSVWSKPAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRI 62
           A +AAFL ARFVPVN  VWSKPAKAGAL T S VAAPPLRHNSS AATAFS PLGV  RI
Sbjct: 57  ARDAAFLLARFVPVNSKVWSKPAKAGALTTFSFVAAPPLRHNSSNAATAFSLPLGVAQRI 116

Query: 63  IAINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVW 122
           I I P TA+SS  TASAP GCLTIKA APA SSATPS P A TRAVTA ASII TQLSV 
Sbjct: 117 IPIKPTTAISSFPTASAPIGCLTIKAKAPATSSATPSLPKALTRAVTAFASIILTQLSVC 176

Query: 123 VERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           VERLNKAVTASFFPL VPSL+SPA AS AP SSAI FL
Sbjct: 177 VERLNKAVTASFFPLEVPSLSSPAKASIAPCSSAIRFL 214

[Close]

BLAST of CaUC03G056880 vs. ExPASy TrEMBL
Match: A0A371EWD5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_50424 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.1e-48
Identity = 114/137 (83.21%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 24  PAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRIIAINPATALSSLATASAPTGC 83
           PA AGA  T SV AAPPLRHNSS AATAFS PLGVP RII INPATA  S  TA APTGC
Sbjct: 40  PANAGAFTTLSVAAAPPLRHNSSNAATAFSLPLGVPQRIIPINPATAACSFTTALAPTGC 99

Query: 84  LTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVWVERLNKAVTASFFPLGVPSLN 143
            TIKANAPAASSATPSFP APTRAVTAPASII TQ SV VERLNKAVTASFFPLGVPS N
Sbjct: 100 RTIKANAPAASSATPSFPKAPTRAVTAPASIILTQFSVCVERLNKAVTASFFPLGVPSCN 159

Query: 144 SPANASTAPSSSAILFL 161
           SPA ASTAP SSAI+FL
Sbjct: 160 SPARASTAPISSAIIFL 176

[Close]

BLAST of CaUC03G056880 vs. ExPASy TrEMBL
Match: A0A0S3T9J1 (Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 GN=Vigan.11G086900 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-29
Identity = 81/112 (72.32%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 49  ATAFSFPLGVPHRIIAINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAV 108
           ATAFS PLGVP RII I PATA SS  TA AP GC TI   AP ASSATPSFP APT  V
Sbjct: 9   ATAFSLPLGVPQRIIPIKPATAASSFTTALAPIGCRTINTRAPTASSATPSFPKAPTSVV 68

Query: 109 TAPASIIRTQLSVWVERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           TA ASII  Q S  VERLNK VT SFFPLGVPS NSPA AST P SS I+FL
Sbjct: 69  TASASIILPQFSRCVERLNKTVTTSFFPLGVPSRNSPARASTTPISSTIIFL 120

[Close]

BLAST of CaUC03G056880 vs. ExPASy TrEMBL
Match: A0A6V7QH41 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS25448 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 87/157 (55.41%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 4   SEAAFLRARFVPVNRSVWSKPAKAGALNTCSVVAAPPLRHNSSKAATAFSFPLGVPHRII 63
           S AAF  A FVPV +   S P   G   T  ++  PP RHNS KAATAFSFP G+P  I 
Sbjct: 49  SNAAFRFALFVPVRKMFCSSPQNPGIRATLRIIIDPPRRHNSCKAATAFSFPFGLPLLIS 108

Query: 64  AINPATALSSLATASAPTGCLTIKANAPAASSATPSFPNAPTRAVTAPASIIRTQLSVWV 123
                T LS+  TA A   C    A+APAASSAT SF +AP   VTAP S   TQ S WV
Sbjct: 109 PTRLVTDLSTETTALATLCCFNSSASAPAASSATNSFSSAPANTVTAPNSNKPTQHSGWV 168

Query: 124 ERLNKAVTASFFPLGVPSLNSPANASTAPSSSAILFL 161
           ERL +A+TASF PL VPS N  AN STAP SS ILFL
Sbjct: 169 ERLKRAITASFLPLVVPSFNKLANDSTAPGSSTILFL 205

The following BLAST results are available for this feature:

BLAST of CaUC03G056880 vs. NCBI nr


Match Name	E-value	Identity	Description
PON95823.1	2.4e-54	81.65	hypothetical protein TorRG33x02_083460 [Trema orientale]	[more]
PON46939.1	8.5e-52	79.11	hypothetical protein PanWU01x14_247830 [Parasponia andersonii]	[more]
RDX70342.1	4.4e-48	83.21	hypothetical protein CR513_50424, partial [Mucuna pruriens]	[more]
BAU01601.1	5.9e-29	72.32	hypothetical protein VIGAN_11086900, partial [Vigna angularis var. angularis]	[more]
CAD1842237.1	3.8e-28	55.41	unnamed protein product [Ananas comosus var. bracteatus]	[more]

BLAST of CaUC03G056880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G056880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5FDF3	1.2e-54	81.65	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_083460 PE=4 SV...	[more]
A0A2P5BDR3	4.1e-52	79.11	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_247830 PE...	[more]
A0A371EWD5	2.1e-48	83.21	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_50424 P...	[more]
A0A0S3T9J1	2.9e-29	72.32	Uncharacterized protein (Fragment) OS=Vigna angularis var. angularis OX=157739 G...	[more]
A0A6V7QH41	1.9e-28	55.41	Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS...	[more]

BLAST of CaUC03G056880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G056880.1	CaUC03G056880.1	mRNA