CaUC03G055980 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G055980
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein LOL2
Location	Ciama_Chr03: 6618528 .. 6623018 (-)
RNA-Seq Expression	CaUC03G055980
Synteny	CaUC03G055980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATTGAAGTTTTTCTCGATTGGGTTAAAGATATTGAATGCTTCTTTGATTATATGGGGACTCCGGATGATAGGAATGTTAAGCTTGTTTCTCTCAAACAAAAAGGTGGCATTTCCGCTTGGTGGGACCAAGTCCAACACAATTGAAAGATGTTTGGTTTACAACCAATTCCAACACTAAAGCAAGGTACACGGAATGTTGAAGAATACATGGAAGAATTCCATCGACTTAGTGCTCAAAACAACCTAGTTGAAAGTGAGAACCAACAGATTGCTCAATATATTGATGGGTTGCGTTATGATATTAAAGAAAAGTTTCACCTTCAACCCCTCATAAGTGTGGCAGAAGTTGTGTCCTTTGTTTTAACAGTGGAAGAAGATGAATCACAAAGGCAGAAATGGCCTCATCTCAACCTCGGAAGATTGCCCAAGACTTTACCAAAAATGCCAATCAAGGTAGCACTACAAAGGGCAAAGAGACAGCAACAAACAAACTTGAGGCAGACCGAAAACAGAATAATAATACTTATAATCAACCTCACATGGGTAAATGCTTTAGGTGTGGTCATCTTTCTAATGATTGTCCTCAAAGAAAAAATTTTACAATCCAAGAGAGGGAAGAAGATCAAGAAGACACCGATCTTAATGATGAAGTAGTGAGGATAATTGGAACTATGGTTACAACTCCTCCAAGGCATGAGTTATTTCGGACTAGATGCATATTAAAAGGAAAGATTTGTAACATTCGGGTCATTTGGCATTTTACAAATTACTTTTTACTCCAAGATTCTCTTAGTCTTTTTGCAACATTTTGCGTCAATTGTGGTTGTTGCAATTACACCACTCAAACTTTCAAATATAAAAATTGGGCCCCTAAACTTGTACAAGTGTTTAAATTAAACTCTCAAACTTACAATAATTGTAGAAATTAGACCCACAAATGTTAAAAATTGAACCCACGAACTTATACAAATGTTACAATTTATATAATTATTAAGTTTGAATGTCCAATTTGATTCAATTTTAACATATATAATTGAAAGTTTGAGGGGTGTAATTGTAACTATCACCATATTTTTGGGGTGGTTTTTGTAATTTGTCCAACTTTTTTCTTCAATATATGTATGGTTAAACTTAAAAAAATAAAAATAAATTCAACCTAAAATAGCATAAGAAAACAATTGAGGAAAATTTGTACATATAACCCAAAAATTGGGCCGAAAATGTCAAATGACCCGAATTTAAAAAAAAAATGCCAAATGACCATTTGTTGATGTCAAGTTCGAATTAAATTACCGAAATGAACTCACGTAAGCGAAAAAGTCGATCTTGCTCTAGCTTTCGCTCTCGCCTTCTTTTCTCACTTACGATCAATCTCATCTCTCATGCTTTCTCTCTTTCACTCTCGCTCTTGTTTACTGGAGGTCGCGTTGGAGCTTGAACTTGTCTTGCCGGAGAAGAAGAAGAAGAAAATAAAAAAAGGGAGAGGGAGTTATGAAGAAGAAGAGGAAAAAAGAGAGAGAGTTGCTAGAGAAGAAGAGAAAAACAGAAAAGGAAAGAAATGGAGAAGAGAAAAATGAAAAAAAAATATATATATATATATATATATATATAAAGAAGGACAACACCATAAATTCTCTAATATCATCAAAAGATTCTTTGGCAATTTTTTTAAAAAAATTGAGTCTTGTGCCTATTTTGGACCTTTAAAATAGGCTTTTAATTGAGAAGTCAGTGCGCCAATTGTTCTCCTCATTAGCGCGGGACGCCGTTGTGGTTCGCAGTTTGTTCTCATACATAGAAAACATGATCGATTCTTAGACGACAGATCGAGAGAATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTGTGAGTGCTTCCGAGGGTTATTTCAGATTTTGTGTTTGCGAATCTTCGTCTTGGTTTTGAGATTCGAAGCATTTAATTATTTCCCATCTCTGGCCCTTTATACATCTGATTGAACTTCTGTTGATTGAATTCAAAACTTAAGCTGACATTTTTCTTTTGTGAGTGAATCGATTTGGTGGTTGCTTCCCACTTCTTATAACGGTGAATATGTTAACCTAAGTTAGCAGGAAAACTCTTTCTGAAATTAATCCAATTCACATCTGTGCAGTGTGTGTTATTAATCCGCTTAAACAATTGTAATTCACACGTAGTTTCAGTTCATGGAATCGATTTTCATCCAACAAAAGCGCATAGAAGTTGGGGCATTCTTGCTAGCATGTTTAATTGCAAGTCCCAAATATTGTAATTGTTCTCACTGGAAACGTTTTGATCTGCAGCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGGTTCCTTCTCTTTTCCTTCCTTCTTTTTAGGTTTTTCTATTATTTTCTTCCTCAAAAGTTGTCTTGTTCATATGCTGTTGGGTTTTTGCTAATTTTTAAGAGCCCCAATTCCCATGTATGTTGGTTTCAAAATGCCATTAGCACTTCCAAACTCTATGCTCTTCAATTCTGTTTTCTTCCTACTGCGTCCTCTTTCATTAGAGGGTCAAGTGTTCGGTTTTAACTCTGAATATTTTTTTCTTGTGCTAGTTCTGGGTGGTGCCTGTGTACCCCTTTTTCTTACCTATATGTAATACTTGAGGGAAGTGTTTATGGTGTTAAGGATTTACATTATGTGATTGTGCCTCCAAACATTAATGCTCTACATAAAACCAAATATTGTAGGATTTATGATACTTTTCAGATGGGTCATAGATGAGTTTAGGTGGTCTTACAGACATTGAAATCTGAATCATTTTCCCCCATTCCTGCATTCAAAGTATCCACATCTTAGCCACCAAGTACAATTGTTGAGTTCGATCAACTCATCCTTAGGACGAGCCAACACTAGACCAGTTTATAAATTAAATAACTGTATACAGCCTGAAATCCAAATGATCATTACTTTTTCCATTTCCATTTCTTTTCAATACATGCTTGTATCTGGATGTTAAAAGCAAATTTTGGCTTTCCAGAAGGGTTTCTACTATGTGTGTGTAATTGTCCAAGTATTCTGTCCTTCCCGTTGAATTAATAGGTACTCTATTGTAGATTGATTGAATTTTGAAGATTTTAGCTGATGGGATTAGATTAGAGTCTAATTCTCCTTGAAAACTCTCATTTCCTAGAATTTGGGTTCAGTGGATGTAATCAATCATTTCTAGAATCTGCTGAAAAAATGAAATTCATGTTTAGAAGAAAAATACTTCAGCATAACATTTTTTGGCAGTTCAAATCTATATTGTTCTGAAAAGTTCACGTCTGTCGCAAGGCAGTTCAAGTTTATCTATTTTGTCATTTTTTCATGATTTACTATACAATTTTTACTTAATTAGTCTTTATAACGACTTGCTGTCAATGTCTTATGATTCAGCTTTCCTTTTCTTTTATTAACACCTCTTCATTCTCCTTTCAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTATGTCACTCCACATTCTGGCAAAGTTCTCGCTTGGAATATGCTTAAATACGTATCGTACAGTCTAAATCTTTATAGTTGTCTCCTTCATTCATGGTTAAATTACAAATTTCGTCTCTATGGTTTGAAGAAAGTTAGAATTTAGTTTTTATGGTTTGATAAAACCTCATAAATAGTTCTTGTGGATTTTAATTATGCTTTTGTTGCGAGTTCACATTTATGGAAACGAGGGTGACGGTTACGGTAATTTCAACCGTTTCTTTGCTTTGATGCTTGATTTTTTTTATTCATCGGCTTTAATTGGCTGTGCAGGTGCATAACAGGCGTCCACCATGGTCTGTCCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAGTAGAGTCTGTTCATCTATGAGATACTTCTGCTTAGGAAAAGATGTGGCATTTCCGAAATTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAAGGAAAACAACATTATCAATCACTACTCGCACTTTTATTTCTTATTATTAGTTACTGAGTTTATGTAAAGGAACTTAGGAACTGACCTTCCCAAATTCTAACATGTTTTTATCTCAAGTTTTTTGCCTTGTGACTTGACTTCCTGCTTATGCTCATTTTTTAGGCTGCTGATTGGAGCCTTATTAGGTGCTTCCAACCTCTGAGGTGTTCTTTTTTGGTAATTTGTAAATGATTGTAGCCTTTCGTATTGTCAAATTGTTGTGGCGTAATTTAATGAGATGTGCCATCTATAATTTATCTTC

mRNA sequence

ATGAACATTGAAGTTTTTCTCGATTGGGTTAAAGATATTGAATGCTTCTTTGATTATATGGGGACTCCGGATGATAGGAATGTTAAGCTTGTTTCTCTCAAACAAAAAGGTACACGGAATGTTGAAGAATACATGGAAGAATTCCATCGACTTAGTGCTCAAAACAACCTAGTTGAAAGTGAGAACCAACAGATTGCTCAATATATTGATGGGTTGCGTTATGATATTAAAGAAAAGTTTCACCTTCAACCCCTCATAAGTGTGGCAGAAGTTGTGTCCTTTGTTTTAACAGTGGAAGAAGATGAATCACAAAGGCAGAAATGGCCTCATCTCAACCTCGGAAGATTGCCCAAGACTTTACCAAAAATGCCAATCAAGGTAGCACTACAAAGGGCAAAGAGACAGCAACAAACAAACTTGAGGCAGACCGAAAACAGAATAATAATACTTATAATCAACCTCACATGGGTAAATGCTTTAGACGACAGATCGAGAGAATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTTGTGTGTTATTAATCCGCTTAAACAATTGTAATTCACACGTAGTTTCAGTTCATGGAATCGATTTTCATCCAACAAAAGCGCATAGAACCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCATGGTCTGTCCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAGTAGAGTCTGTTCATCTATGAGATACTTCTGCTTAGGAAAAGATGTGGCATTTCCGAAATTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAAGGAAAACAACATTATCAATCACTACTCGCACTTTTATTTCTTATTATTAGTTACTGAGTTTATGTAAAGGAACTTAGGAACTGACCTTCCCAAATTCTAACATGTTTTTATCTCAAGTTTTTTGCCTTGTGACTTGACTTCCTGCTTATGCTCATTTTTTAGGCTGCTGATTGGAGCCTTATTAGGTGCTTCCAACCTCTGAGGTGTTCTTTTTTGGTAATTTGTAAATGATTGTAGCCTTTCGTATTGTCAAATTGTTGTGGCGTAATTTAATGAGATGTGCCATCTATAATTTATCTTC

Coding sequence (CDS)

ATGAACATTGAAGTTTTTCTCGATTGGGTTAAAGATATTGAATGCTTCTTTGATTATATGGGGACTCCGGATGATAGGAATGTTAAGCTTGTTTCTCTCAAACAAAAAGGTACACGGAATGTTGAAGAATACATGGAAGAATTCCATCGACTTAGTGCTCAAAACAACCTAGTTGAAAGTGAGAACCAACAGATTGCTCAATATATTGATGGGTTGCGTTATGATATTAAAGAAAAGTTTCACCTTCAACCCCTCATAAGTGTGGCAGAAGTTGTGTCCTTTGTTTTAACAGTGGAAGAAGATGAATCACAAAGGCAGAAATGGCCTCATCTCAACCTCGGAAGATTGCCCAAGACTTTACCAAAAATGCCAATCAAGGTAGCACTACAAAGGGCAAAGAGACAGCAACAAACAAACTTGAGGCAGACCGAAAACAGAATAATAATACTTATAATCAACCTCACATGGGTAAATGCTTTAGACGACAGATCGAGAGAATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTTGTGTGTTATTAATCCGCTTAAACAATTGTAATTCACACGTAGTTTCAGTTCATGGAATCGATTTTCATCCAACAAAAGCGCATAGAACCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCATGGTCTGTCCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAGTAG

Protein sequence

MNIEVFLDWVKDIECFFDYMGTPDDRNVKLVSLKQKGTRNVEEYMEEFHRLSAQNNLVESENQQIAQYIDGLRYDIKEKFHLQPLISVAEVVSFVLTVEEDESQRQKWPHLNLGRLPKTLPKMPIKVALQRAKRQQQTNLRQTENRIIILIINLTWVNALDDRSREWMSMKSIKTKMTGLLLDGNPSLRRFRYRRRHFLCVLLIRLNNCNSHVVSVHGIDFHPTKAHRTDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

Homology

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BLAST of CaUC03G055980 vs. NCBI nr
Match: XP_011653178.1 (protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-47
Identity = 95/103 (92.23%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 223 PTKAHRTDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLM 282
           P +    DMAQMVCGTCRRLLKYLKGAR VQCSCCSTVNFVLEAHEVGQVKCGSCAVLLM
Sbjct: 30  PPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLM 89

Query: 283 YPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           YPYGASSVRCSSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Sbjct: 90  YPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ 132

[Close]

BLAST of CaUC03G055980 vs. NCBI nr
Match: XP_004146601.1 (protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_013266 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-47
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 229 TDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 288
           +DMAQMVCGTCRRLLKYLKGAR VQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS
Sbjct: 35  SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 94

Query: 289 SVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           SVRCSSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Sbjct: 95  SVRCSSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ 131

[Close]

BLAST of CaUC03G055980 vs. NCBI nr
Match: XP_008442544.1 (PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-46
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 289
           DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
Sbjct: 36  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 95

Query: 290 VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Sbjct: 96  VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 131

[Close]

BLAST of CaUC03G055980 vs. NCBI nr
Match: XP_008442535.1 (PREDICTED: protein LOL2 isoform X3 [Cucumis melo] >TYK26415.1 protein LOL2 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-46
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 289
           DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
Sbjct: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96

Query: 290 VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Sbjct: 97  VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 132

[Close]

BLAST of CaUC03G055980 vs. NCBI nr
Match: XP_022927005.1 (protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo subsp. pepo] >KAG6583998.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019620.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 2.8e-46
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 223 PTKAHRTDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLM 282
           P +   +DMAQMVCGTCRRLLKYLKGAR VQCSCCSTVN+VLEAHEVGQVKCGSCAVLLM
Sbjct: 29  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLM 88

Query: 283 YPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           YPYGASSVRCSSCT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Sbjct: 89  YPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ 131

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BLAST of CaUC03G055980 vs. ExPASy Swiss-Prot
Match: O65426 (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-30
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 222 HPTKAHRTDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLL 281
           +PT     + AQMVCG+CRRLL YL+G++ V+CS C TVN VLEA++VGQV C +C +LL
Sbjct: 49  NPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLL 108

Query: 282 MYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQG 316
           MYPYGA +VRCSSC SVT+I  +N+RPPWS QQG
Sbjct: 109 MYPYGAPAVRCSSCNSVTDISENNKRPPWSEQQG 142

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BLAST of CaUC03G055980 vs. ExPASy Swiss-Prot
Match: Q704V3 (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.4e-24
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 223 PTKAHRTDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLM 282
           P+     ++ QMVCG+CR LL Y +GA  V C+CC T+N+VLEAHEVG+V CG CA LLM
Sbjct: 60  PSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGHCATLLM 119

Query: 283 YPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 315
           YP+GA +V+CS C  VTEIG  N R   S++Q
Sbjct: 120 YPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

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BLAST of CaUC03G055980 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-20
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 229 TDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 288
           T+MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA 
Sbjct: 69  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGAR 128

Query: 289 SVRCSSCTSVTEIG 303
           SV+C+ C  VT +G
Sbjct: 129 SVKCAVCNFVTSVG 142

[Close]

BLAST of CaUC03G055980 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.8e-20
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 229 TDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 288
           T+MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA 
Sbjct: 100 TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGAR 159

Query: 289 SVRCSSCTSVTEIG 303
           SV+C+ C  VT +G
Sbjct: 160 SVKCAVCNFVTSVG 173

[Close]

BLAST of CaUC03G055980 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.9e-18
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVL 289
           DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   
Sbjct: 47  DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTT 106

Query: 290 LMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 322
           LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 107 LMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

[Close]

BLAST of CaUC03G055980 vs. ExPASy TrEMBL
Match: A0A0A0LXE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 229 TDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 288
           +DMAQMVCGTCRRLLKYLKGAR VQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS
Sbjct: 35  SDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 94

Query: 289 SVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           SVRCSSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Sbjct: 95  SVRCSSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ 131

[Close]

BLAST of CaUC03G055980 vs. ExPASy TrEMBL
Match: A0A5A7UQS3 (Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001680 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 289
           DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
Sbjct: 36  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 95

Query: 290 VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Sbjct: 96  VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 131

[Close]

BLAST of CaUC03G055980 vs. ExPASy TrEMBL
Match: A0A5D3DST5 (Protein LOL2 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00790 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 289
           DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
Sbjct: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96

Query: 290 VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Sbjct: 97  VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 132

[Close]

BLAST of CaUC03G055980 vs. ExPASy TrEMBL
Match: A0A1S3B6K2 (protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 289
           DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
Sbjct: 37  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 96

Query: 290 VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Sbjct: 97  VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 132

[Close]

BLAST of CaUC03G055980 vs. ExPASy TrEMBL
Match: A0A1S3B6Q2 (protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-46
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 289
           DMAQMVCGTCRRLLKYLKGAR VQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS
Sbjct: 36  DMAQMVCGTCRRLLKYLKGARYVQCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 95

Query: 290 VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 326
           VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Sbjct: 96  VRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ 131

[Close]

BLAST of CaUC03G055980 vs. TAIR 10
Match: AT4G21610.1 (lsd one like 2 )

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-31
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 222 HPTKAHRTDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLL 281
           +PT     + AQMVCG+CRRLL YL+G++ V+CS C TVN VLEA++VGQV C +C +LL
Sbjct: 49  NPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLL 108

Query: 282 MYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQG 316
           MYPYGA +VRCSSC SVT+I  +N+RPPWS QQG
Sbjct: 109 MYPYGAPAVRCSSCNSVTDISENNKRPPWSEQQG 142

[Close]

BLAST of CaUC03G055980 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-21
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 229 TDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 288
           T+MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA 
Sbjct: 69  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGAR 128

Query: 289 SVRCSSCTSVTEIG 303
           SV+C+ C  VT +G
Sbjct: 129 SVKCAVCNFVTSVG 142

[Close]

BLAST of CaUC03G055980 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-21
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 229 TDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 288
           T+MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA 
Sbjct: 102 TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGAR 161

Query: 289 SVRCSSCTSVTEIG 303
           SV+C+ C  VT +G
Sbjct: 162 SVKCAVCNFVTSVG 175

[Close]

BLAST of CaUC03G055980 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-21
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 229 TDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGAS 288
           T+MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA 
Sbjct: 69  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGAR 128

Query: 289 SVRCSSCTSVTEIG 303
           SV+C+ C  VT +G
Sbjct: 129 SVKCAVCNFVTSVG 142

[Close]

BLAST of CaUC03G055980 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 92.4 bits (228), Expect = 7.0e-19
Identity = 45/103 (43.69%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 230 DMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVL 289
           DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   
Sbjct: 47  DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTT 106

Query: 290 LMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAPPT 322
           LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+
Sbjct: 107 LMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

The following BLAST results are available for this feature:

BLAST of CaUC03G055980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653178.1	1.2e-47	92.23	protein LOL2 isoform X1 [Cucumis sativus]	[more]
XP_004146601.1	3.4e-47	96.91	protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_0...	[more]
XP_008442544.1	2.2e-46	97.92	PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 iso...	[more]
XP_008442535.1	2.2e-46	97.92	PREDICTED: protein LOL2 isoform X3 [Cucumis melo] >TYK26415.1 protein LOL2 isofo...	[more]
XP_022927005.1	2.8e-46	90.29	protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo s...	[more]

BLAST of CaUC03G055980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65426	2.3e-30	63.83	Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1	[more]
Q704V3	5.4e-24	56.52	Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1	[more]
Q93ZB1	2.8e-20	59.46	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	4.8e-20	58.11	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
P94077	9.9e-18	43.69	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of CaUC03G055980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXE3	1.6e-47	96.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1	[more]
A0A5A7UQS3	1.1e-46	97.92	Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DST5	1.1e-46	97.92	Protein LOL2 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B6K2	1.1e-46	97.92	protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1	[more]
A0A1S3B6Q2	1.1e-46	97.92	protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1	[more]

BLAST of CaUC03G055980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21610.1	1.6e-31	63.83	lsd one like 2	[more]
AT1G32540.2	2.0e-21	59.46	lsd one like 1	[more]
AT1G32540.1	2.0e-21	59.46	lsd one like 1	[more]
AT1G32540.3	2.0e-21	59.46	lsd one like 1	[more]
AT4G20380.2	7.0e-19	43.69	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..146
None	No IPR available	COILS	Coil	Coil	coord: 41..61
None	No IPR available	PANTHER	PTHR31747:SF17	PROTEIN LOL2	coord: 224..320
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 274..298 e-value: 1.5E-10 score: 40.7 coord: 236..260 e-value: 1.4E-5 score: 24.8
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 233..263 e-value: 9.4E-12 score: 42.4 coord: 271..300 e-value: 1.3E-11 score: 41.9
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 23..73 e-value: 2.9E-6 score: 27.4
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 224..320

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G055980.1	CaUC03G055980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005634	nucleus