CaUC03G051500 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G051500
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	cyclin-dependent protein kinase inhibitor SMR3-like
Location	Ciama_Chr03: 1656635 .. 1656994 (+)
RNA-Seq Expression	CaUC03G051500
Synteny	CaUC03G051500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCCATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACGAGTCTCCGGTGTCCAATGGCGCCGAGGAAACCAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGATTAGACAATAA

mRNA sequence

ATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCCATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACGAGTCTCCGGTGTCCAATGGCGCCGAGGAAACCAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGATTAGACAATAA

Coding sequence (CDS)

ATGGGTCTCTTCAATTCAAGTATTTTGCTCTCTGAAAATGATGTAAACGCCATGGAGTTCACTTTTCTTCTTACATACGTCAATTCCAAAGAAGAAGAAGAAGAAGAGAAAAATGGAAGCAACTTAGTTGTTGAAGATGACGACAATGGGTTCAAAACTCCAACATCTTTGGAGCATAAAATTCCGACGAGTCTCCGGTGTCCAATGGCGCCGAGGAAACCAAAACCTCGGCCATTGATGAAGCGGAAGGCGGCAGAACGACACCGTTTGTTGCTGGATCTTTCCTCTGAGATTCAGTCTTTGTTTCCAGCTGATTTTCTTGTAGGCCTTGGTGGTAAGATCAAGAGGATTAGACAATAA

Protein sequence

MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRIRQ

Homology

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BLAST of CaUC03G051500 vs. NCBI nr
Match: XP_011658114.1 (cyclin-dependent protein kinase inhibitor SMR3 [Cucumis sativus] >KGN65712.1 hypothetical protein Csa_019570 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 6.8e-46
Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKT 60
           MGLFNSSILLSENDVN+MEFTFLL YVNSKE+++EE         G +  VEDDDNGFKT
Sbjct: 1   MGLFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKT 60

Query: 61  PTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGK 120
           PTSLEHKIPTSL+CPMAPRKPKPR L KRKA ERHRLLLDLSSEIQSLFPA+FLVGLGGK
Sbjct: 61  PTSLEHKIPTSLQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGK 120

[Close]

BLAST of CaUC03G051500 vs. NCBI nr
Match: XP_016902107.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo] >KAA0067708.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >TYK21932.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 4.4e-45
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGF 60
           MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++EE       NG SN VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLG 120
           KTPTSLEHKIPTS++CPMAPRKPKPR L KRKA ERHRLLLDLSSEIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

[Close]

BLAST of CaUC03G051500 vs. NCBI nr
Match: KAG7036922.1 (hypothetical protein SDJN02_00542, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 3.2e-40
Identity = 91/117 (77.78%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHK 60
           M LFNS+ILLSENDV+AMEFTFLLTY+ SK ++ +  + S   V+DDDNGFKTPTSLEHK
Sbjct: 1   MALFNSTILLSENDVSAMEFTFLLTYLTSKHQDHDLDHESK-SVQDDDNGFKTPTSLEHK 60

Query: 61  IPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGKIKRI 118
           IP SLRCPMAPRKPK RP+MKRKA ER RL LDLSSEIQSLFPADFLVGLGGK+KR+
Sbjct: 61  IPASLRCPMAPRKPKSRPMMKRKAVERQRLFLDLSSEIQSLFPADFLVGLGGKMKRL 116

[Close]

BLAST of CaUC03G051500 vs. NCBI nr
Match: KAG6607237.1 (hypothetical protein SDJN03_00579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 1.8e-38
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEKNGSNLVVEDDDNGFKTPTSLEHK 60
           M LFNS+ILLSENDV+AMEFTFLLTY+ SK ++ +  + S   VEDDDNGFKTPTSLEHK
Sbjct: 1   MALFNSTILLSENDVSAMEFTFLLTYLTSKHQDHDLDHESK-SVEDDDNGFKTPTSLEHK 60

Query: 61  IPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGG 113
           IP SLRCPMAPRKPK RP+MKRKA ER RL LDLSSEIQSLFPADFLVGLGG
Sbjct: 61  IPASLRCPMAPRKPKSRPMMKRKAVERQRLFLDLSSEIQSLFPADFLVGLGG 111

[Close]

BLAST of CaUC03G051500 vs. NCBI nr
Match: KAE8039043.1 (hypothetical protein FH972_011491 [Carpinus fangiana])

HSP 1 Score: 114.4 bits (285), Expect = 6.8e-22
Identity = 74/145 (51.03%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLL------------TYVNSKEEEEEEKN---------- 60
           MG+ +S + LSE D+NAMEF FL+              V  +EEEEEE+N          
Sbjct: 11  MGVSDSQMFLSEKDLNAMEFNFLVPPTLEFQEDHGKPEVVKQEEEEEEENKKKKKINIPS 70

Query: 61  ---GSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLS 120
              G    VEDD++GFKTPTSL+HKIP  L+CP APRKPK  PL KRKAA R R+LLDLS
Sbjct: 71  VTVGEFRDVEDDEDGFKTPTSLDHKIPAILQCPPAPRKPKTIPLTKRKAA-RQRILLDLS 130

[Close]

BLAST of CaUC03G051500 vs. ExPASy TrEMBL
Match: A0A0A0LY05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.3e-46
Identity = 102/126 (80.95%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLLTYVNSKEEEEEE-------KNGSNLVVEDDDNGFKT 60
           MGLFNSSILLSENDVN+MEFTFLL YVNSKE+++EE         G +  VEDDDNGFKT
Sbjct: 1   MGLFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDGQEETLNGGRSNSVEDDDNGFKT 60

Query: 61  PTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLGGK 120
           PTSLEHKIPTSL+CPMAPRKPKPR L KRKA ERHRLLLDLSSEIQSLFPA+FLVGLGGK
Sbjct: 61  PTSLEHKIPTSLQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLGGK 120

[Close]

BLAST of CaUC03G051500 vs. ExPASy TrEMBL
Match: A0A5A7VIY0 (Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold710G00040 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGF 60
           MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++EE       NG SN VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLG 120
           KTPTSLEHKIPTS++CPMAPRKPKPR L KRKA ERHRLLLDLSSEIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

[Close]

BLAST of CaUC03G051500 vs. ExPASy TrEMBL
Match: A0A1S4E1K5 (cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=LOC107991540 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MGL--FNSSILLSENDVNAMEFTFLLTYVNSKEEEEEEK------NG-SNLVVEDDDNGF 60
           MGL  FNSSILLSENDVN+MEFTFLL YVNSKE+++EE       NG SN VV+DDDNGF
Sbjct: 1   MGLFDFNSSILLSENDVNSMEFTFLLRYVNSKEDDQEEDRQEETLNGRSNSVVQDDDNGF 60

Query: 61  KTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLSSEIQSLFPADFLVGLG 120
           KTPTSLEHKIPTS++CPMAPRKPKPR L KRKA ERHRLLLDLSSEIQSLFPA+FLVGLG
Sbjct: 61  KTPTSLEHKIPTSIQCPMAPRKPKPRRLTKRKAVERHRLLLDLSSEIQSLFPAEFLVGLG 120

[Close]

BLAST of CaUC03G051500 vs. ExPASy TrEMBL
Match: A0A660KRH4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 74/145 (51.03%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLL------------TYVNSKEEEEEEKN---------- 60
           MG+ +S + LSE D+NAMEF FL+              V  +EEEEEE+N          
Sbjct: 11  MGVSDSQMFLSEKDLNAMEFNFLVPPTLEFQEDHGKPEVVKQEEEEEEENKKKKKINIPS 70

Query: 61  ---GSNLVVEDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKAAERHRLLLDLS 120
              G    VEDD++GFKTPTSL+HKIP  L+CP APRKPK  PL KRKAA R R+LLDLS
Sbjct: 71  VTVGEFRDVEDDEDGFKTPTSLDHKIPAILQCPPAPRKPKTIPLTKRKAA-RQRILLDLS 130

[Close]

BLAST of CaUC03G051500 vs. ExPASy TrEMBL
Match: A0A2N9ECP2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS397 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 72/150 (48.00%), Postives = 88/150 (58.67%), Query Frame = 0


Query: 1   MGLFNSSILLSENDVNAMEFTFLL-----------------TYVNSKEEEEEEKNGSNLV 60
           MG+ +S   LSE D+NAME  FL+                   V  +++EEEE    N+ 
Sbjct: 11  MGVSDSQRFLSEKDLNAMELNFLVRPTLDFQEEDHDQLSKKPEVKEEKQEEEEDKCKNIA 70

Query: 61  V------------EDDDN-GFKTPTSLEHKIPTSLRCPMAPRKPKPR--PLMKRKAAERH 119
           V            ED+DN GFKTPTSL+HKIP  L+CP APRKPKP+  P  KRKA  R 
Sbjct: 71  VSSLKLKIPCSVEEDEDNDGFKTPTSLDHKIPVILQCPPAPRKPKPKSIPSTKRKAG-RR 130

[Close]

BLAST of CaUC03G051500 vs. TAIR 10
Match: AT5G59360.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 26/76 (34.21%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 45  EDDDNGFKTPTSLEHKIPTSLRCPMAPRKPKPRPLMKRKA--AERHRLLLDLSSEIQSLF 104
           +D+++  K P +  +        P  PRKPK  P MKR+    +R  + LD++ E++S+F
Sbjct: 78  KDEESPVKIPETPRNSNSVCYCPPRPPRKPKAIPSMKRRGMWVKRSVVFLDVAREVESMF 137

Query: 105 PADFLVGLGGKIKRIR 119
           P   L   G KIK+ R
Sbjct: 138 PPSVLQDFGKKIKKAR 153

[Close]

BLAST of CaUC03G051500 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 46  DDDNGFKTPTSLEHKIP--TSLRCPMAPRKPKPRPL--MKRKAAE---RHRLLLDLSSEI 103
           +++ G KTPTS +HKIP      CP APRKPKP      KRK       +R+ +DLS EI
Sbjct: 39  NEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRSSGTKRKLTPVNVVNRIPIDLSREI 98

The following BLAST results are available for this feature:

BLAST of CaUC03G051500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658114.1	6.8e-46	80.95	cyclin-dependent protein kinase inhibitor SMR3 [Cucumis sativus] >KGN65712.1 hyp...	[more]
XP_016902107.1	4.4e-45	81.25	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo] >K...	[more]
KAG7036922.1	3.2e-40	77.78	hypothetical protein SDJN02_00542, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607237.1	1.8e-38	79.46	hypothetical protein SDJN03_00579, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8039043.1	6.8e-22	51.03	hypothetical protein FH972_011491 [Carpinus fangiana]	[more]

BLAST of CaUC03G051500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G051500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY05	3.3e-46	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G506960 PE=4 SV=1	[more]
A0A5A7VIY0	2.1e-45	81.25	Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S4E1K5	2.1e-45	81.25	cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A660KRH4	3.3e-22	51.03	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_011491 PE=4 SV=1	[more]
A0A2N9ECP2	4.0e-20	48.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS397 PE=4 SV=1	[more]

BLAST of CaUC03G051500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59360.1	1.1e-04	34.21	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G02420.1	3.1e-04	45.31	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..81
None	No IPR available	PANTHER	PTHR33142:SF66	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKE	coord: 30..119
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 30..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G051500.1	CaUC03G051500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus