CaUC03G051440 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G051440
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	RING-type E3 ubiquitin transferase
Location	Ciama_Chr03: 1595177 .. 1597848 (+)
RNA-Seq Expression	CaUC03G051440
Synteny	CaUC03G051440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTGCCCATTTTTTCAACACTCCTAACTATTTTTCCACCTTCCACTACGTCGATAACGTCGTCGCCGGCGCCCTCGTGGTCACTGCTTGGACTGTATCCATACGAGTATTTGGCTGTGGTATTCATATTGCTCCTCTTTATACTCTATTTCTACTTGGTTGTTCTGTTTAACAAAAGAGCCAACAGATCATCCGACAACGAGATTGTGGAGACTGAAGCACCGGTTTTCAGTTATGGCGAAGACGGTGGTGAAAAAGAATGTGTAATTTGCCTTTGCGAAATTGAAAAAGAGGATAAATGTCGAAGGATGAACACGTGCAATCACGTGTTTCATAAGGATTGTATTGACCAGTGGTTTACGGTGGAGCACCATTGTCCTCTTTGCCGGACCCTCATTTCTGTGGTGGTTGATGGTGATGGAAATACCACGGATTCTTCTCCTCCACTCCCATTTGACAGGAGTTCTTACAATTTTTTAGGATCCCTTTGGTAGTCAATCAAAAATCTTTTGTAAACTTGTTATCAAACTTATTCATCTTTGTTATATATATAAATTAGGATTATCATCTTTAATTGATTTAATTTATGGGTGGAAACTAATTTAATATTGATATGCTTTTGTTTATTAAAAAAAAATTATTCAAACTTGTTGGAAAATTATTTTAAATGCCAAAATTGCTTAAAATATTTACAAATAATAGCAAAATATTACCGTCAATCTGCGATAGATTAGTATTTGTGTTTATCTCGTGTTCTATCCTAGGTAAACAGTAAAATTTTGCAATATTTGTAAATATTTTGGTTCATCTTCTTATATTTAAAAACAACATTTTTAATAACGGTTGATTATGAATTGAACTTATCTTAGTCCCTCCTCTAAAAAAAAAAAAAAAAAAAATCCCTTCGATAAATTTTAGGTTAAAATGATAAATTTAGTTCATGAATTTTAAGGTTTCAATTTATTTATTCTATAAACTTATAAAAGTGTTTAAACAAGTTTCTAGATTTAAGTTTTTAAACTTTCAATTTAGCAACTATAGATCTTTAGGCTTTAAATTTTATTCTAATCTATGTCTATGATAAACACAAACGTTTTAAAATTTAATTAATTAATTAAATTTTATGTCTAATAAAAAAACTAAACTATTAATTTGTGACTGGCATATCTTTAAAAAATTCATTTTTTAAAAGTTGAATCACTAAATTTGAAAATTTAAAAATTTAATGACTATTAATTTGTAATTTTGTTTGGGTCCCAAATGTCTCATTTATGTGTTTCTTGTCATGTCTTATTTGTATATTGAATTTTTTTTATTAAGAAAAAAATCAATTTTGATGATTAAGTTGTATCAATTTGAATTCTAAACTTTCAATTTCATACCATTAGTTTTACCACGATTTAAATCGAGCTCATTCATCCACTATTTCTAACAAAATATGCATGGTGTAAAAATATTATCACATTCATTTGAATAAAATAAAATTGTGTACACAAGGTAAGTTTTAGCAAATGTAGCTCTAATGTTATTTTCTCAAAAATTTCAGGTTTTATATTCATTAAATACATAGGAGAATTTTTTGAAACGTTATGTGGGGAGAAAACTTTATTAGAAGTAATTTTTTTAGAGTAAGTAATATAAGAAAAATTATTTTAAATGATAAAACTGCTGAAAATATTTATAATTAATAGCAAAATATACGGTCTATGGCAGATAGACCACGATAGACAGTACAGTAAAATTTTCTTATATTTATAAATATTTTGGTTCCTTTTGCTATATTTGAAAAGATCCTTTAATATAATAAAATTAAAATTTAAAGAAAAATTATTTTAAATGATAAAACTGTTGAAAATATTTATAAAATATCACAAAGTAGATCGTGATAAACTATATTTGTATCTATTATCAAAATTTTGGTATATTCATAAATATTTTAAATAACATAATTACATAAATACCCTTACCTATACTGGGCCTGGGGAGGGCGCATAAGATGGGCTCTCATTTGTGAAAGAAGAAGCCCAATACAAGACCTCTCATCAATGCTAAAGAATCTCATTCCTTTTACAACTCTTTCACTCTTCCAAAACCGTATCACTAAAAAACAAAGGAAAAAAAAAAAAATCAAATTCTCAGAATCTTTCCGACGGCCGTAGCTCCAACGACCATGCCTCCACCGCCTCCGCCACCGCCACCTCCGGCGGAGTTATCCGTCGACGTTCTCTCCACTCTAGATCTCGACTTTCTAAATTTCGCAGGACTGTCGGCTCTGGCTTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACACAAATACTGGAATCGAAACGGAGATATCGAAGGCGGACGGCCACCGTCGTCGAGGACGGTGGCTGAACCTCCGACTTCAGAGGCAGGTGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGGTAGGGAAAAATGGGGATTGTTCGATTTGTTTGGATGAATTTACAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAACGAACGCCATTGTCCTCTTTGTCGTTCCCCTGTTCATGTTCGCATCATTTATTCAAATCCCTCTTGA

mRNA sequence

ATGCCGTTGCCCATTTTTTCAACACTCCTAACTATTTTTCCACCTTCCACTACGTCGATAACGTCGTCGCCGGCGCCCTCGTGGTCACTGCTTGGACTGTATCCATACGAGTATTTGGCTGTGGTATTCATATTGCTCCTCTTTATACTCTATTTCTACTTGGTTGTTCTGTTTAACAAAAGAGCCAACAGATCATCCGACAACGAGATTGTGGAGACTGAAGCACCGGTTTTCAGTTATGGCGAAGACGGTGGTGAAAAAGAATGTGTAATTTGCCTTTGCGAAATTGAAAAAGAGGATAAATGTCGAAGGATGAACACGTGCAATCACGTGTTTCATAAGGATTGTATTGACCAGTGGTTTACGGTGGAGCACCATTGTCCTCTTTGCCGGACCCTCATTTCTGTGGTGGTTGATGGTGATGGAAATACCACGGATTCTTCTCCTCCACTCCCATTTGACAGGACTCCAACGACCATGCCTCCACCGCCTCCGCCACCGCCACCTCCGGCGGAGTTATCCGTCGACGTTCTCTCCACTCTAGATCTCGACTTTCTAAATTTCGCAGGACTGTCGGCTCTGGCTTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACACAAATACTGGAATCGAAACGGAGATATCGAAGGCGGACGGCCACCGTCGTCGAGGACGGTGGCTGAACCTCCGACTTCAGAGGCAGGTGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGGTAGGGAAAAATGGGGATTGTTCGATTTGTTTGGATGAATTTACAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAACGAACGCCATTGTCCTCTTTGTCGTTCCCCTGTTCATGTTCGCATCATTTATTCAAATCCCTCTTGA

Coding sequence (CDS)

ATGCCGTTGCCCATTTTTTCAACACTCCTAACTATTTTTCCACCTTCCACTACGTCGATAACGTCGTCGCCGGCGCCCTCGTGGTCACTGCTTGGACTGTATCCATACGAGTATTTGGCTGTGGTATTCATATTGCTCCTCTTTATACTCTATTTCTACTTGGTTGTTCTGTTTAACAAAAGAGCCAACAGATCATCCGACAACGAGATTGTGGAGACTGAAGCACCGGTTTTCAGTTATGGCGAAGACGGTGGTGAAAAAGAATGTGTAATTTGCCTTTGCGAAATTGAAAAAGAGGATAAATGTCGAAGGATGAACACGTGCAATCACGTGTTTCATAAGGATTGTATTGACCAGTGGTTTACGGTGGAGCACCATTGTCCTCTTTGCCGGACCCTCATTTCTGTGGTGGTTGATGGTGATGGAAATACCACGGATTCTTCTCCTCCACTCCCATTTGACAGGACTCCAACGACCATGCCTCCACCGCCTCCGCCACCGCCACCTCCGGCGGAGTTATCCGTCGACGTTCTCTCCACTCTAGATCTCGACTTTCTAAATTTCGCAGGACTGTCGGCTCTGGCTTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACACAAATACTGGAATCGAAACGGAGATATCGAAGGCGGACGGCCACCGTCGTCGAGGACGGTGGCTGAACCTCCGACTTCAGAGGCAGGTGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGGTAGGGAAAAATGGGGATTGTTCGATTTGTTTGGATGAATTTACAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAACGAACGCCATTGTCCTCTTTGTCGTTCCCCTGTTCATGTTCGCATCATTTATTCAAATCCCTCTTGA

Protein sequence

MPLPIFSTLLTIFPPSTTSITSSPAPSWSLLGLYPYEYLAVVFILLLFILYFYLVVLFNKRANRSSDNEIVETEAPVFSYGEDGGEKECVICLCEIEKEDKCRRMNTCNHVFHKDCIDQWFTVEHHCPLCRTLISVVVDGDGNTTDSSPPLPFDRTPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS

Homology

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BLAST of CaUC03G051440 vs. NCBI nr
Match: KAE8653247.1 (hypothetical protein Csa_019633 [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 9.9e-92
Identity = 186/312 (59.62%), Postives = 225/312 (72.12%), Query Frame = 0


Query: 20  ITSSPAPSWSLLGLYP--YEYLAVVFILLLFILYFYLVVLFNKRANRSSDNEIVET---E 79
           ++ SP P      L P  +  L  + +LLL +L+ ++ +L  KR+ +S   E+ E    E
Sbjct: 3   LSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREELSENLDIE 62

Query: 80  APVFSYGE-DGGEKECVICLCEIEKEDKCRRMNTCNHVFHKDCIDQWFTVEHHCPLCRTL 139
           AP+F Y E +GGE+EC ICLCEIE+ +KCR+M TC HVFHKDCID+WF  ++  P   T 
Sbjct: 63  APIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWF--KNLIPF--TT 122

Query: 140 ISVVVDGDGNTTDSSPPLPFDRTPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSA 199
           +S+               P   +PTTMPPPPPPP    EL VDVLSTLDLDFLNFAGLSA
Sbjct: 123 LSLFQKRITEKKRKQMNSPTAVSPTTMPPPPPPPD---ELPVDVLSTLDLDFLNFAGLSA 182

Query: 200 LALMIVYFIFTCYEHKYWNRNGDIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTK 259
           LALM +YF+FTC E KYWNRNGDIEGGR P+  T+ E P SE  DS  RR +S AVIST+
Sbjct: 183 LALMFLYFVFTCCERKYWNRNGDIEGGRLPTV-TMDESPASETEDSPRRRPSSRAVISTR 242

Query: 260 LFQYG-EGGLVGKNGDCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRS 319
           LFQYG  GG++GKN DCSICLDEFTEGEICRMLPKCKHVFHRFCID+WLPNER+CP+CRS
Sbjct: 243 LFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 302

Query: 320 PVHVRIIYSNPS 325
           PV+VR++YS PS
Sbjct: 303 PVYVRLVYSFPS 306

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BLAST of CaUC03G051440 vs. NCBI nr
Match: XP_038895799.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 2.9e-83
Identity = 151/161 (93.79%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 164 PPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPP 223
           PPPPP PAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYE KYWNRNGDIEGGRPP
Sbjct: 2   PPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPP 61

Query: 224 SSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICR 283
           SS TVAEP  SEAGDSSSRRRASTAVISTKLFQYGEGGL+GKN DCSICLDEF+EGEICR
Sbjct: 62  SSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICR 121

Query: 284 MLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           MLPKCKHVFHRFCIDQWLPNERHCP+CRSPVHVRI+YSNPS
Sbjct: 122 MLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 162

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BLAST of CaUC03G051440 vs. NCBI nr
Match: XP_004151031.2 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 2.2e-67
Identity = 131/170 (77.06%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 156 TPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNG 215
           +PTTMPPPPPPP    EL VDVLSTLDLDFLNFAGLSALALM +YF+FTC E KYWNRNG
Sbjct: 8   SPTTMPPPPPPPD---ELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNG 67

Query: 216 DIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLD 275
           DIEGGR P+  T+ E P SE  DS  RR +S AVIST+LFQYG  GG++GKN DCSICLD
Sbjct: 68  DIEGGRLPTV-TMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLD 127

Query: 276 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           EFTEGEICRMLPKCKHVFHRFCID+WLPNER+CP+CRSPV+VR++YS PS
Sbjct: 128 EFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

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BLAST of CaUC03G051440 vs. NCBI nr
Match: KAA0067737.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-66
Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 156 TPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNG 215
           +PTTMP PPPPP    +L V  LS LDLDFLN AGLSALA+M +YFIFTCYE K+WNRNG
Sbjct: 8   SPTTMPSPPPPPD---DLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 67

Query: 216 DIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLD 275
           DIEGGR P S T+ E P SE GDSS RR +S AVIST+LFQYG  GG++GKN DCSICLD
Sbjct: 68  DIEGGRLP-SETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLD 127

Query: 276 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           EFTEGEICRMLPKCKHVFHRFCIDQWLPNER+CP+CRSPV+VR++YS PS
Sbjct: 128 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

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BLAST of CaUC03G051440 vs. NCBI nr
Match: XP_008457570.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 7.2e-66
Identity = 128/170 (75.29%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 156 TPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNG 215
           +PTTMP PPPPP    +L V  LS LDLDFLN AGLSALA+M +YFIFTCYE K+WNRNG
Sbjct: 8   SPTTMPSPPPPPD---DLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 67

Query: 216 DIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLD 275
           DIEGG+ PS  T+ E P SE GDSS RR +S AVIST+LFQYG  GG++GKN DCSICLD
Sbjct: 68  DIEGGQLPSV-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLD 127

Query: 276 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           EFTEGEICRMLPKCKHVFHRFCIDQWLPNER+CP+CRSPV+VR++YS PS
Sbjct: 128 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

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BLAST of CaUC03G051440 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-17
Identity = 60/165 (36.36%), Postives = 85/165 (51.52%), Query Frame = 0


Query: 161 PPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGG 220
           PPPPPPPPPP ELS+ + +++ +      G   L L +V+F+   Y H    R       
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICV-----VGSIILFLFLVFFL---YLHITQQRRISAASV 85

Query: 221 RPPSSRTVAEPPTSEAGDSS-----------SRRRASTAVISTKLFQYGEGGLVGKNGDC 280
            P  +    +   +E  D S              R++   I+   F+ GEG + G   +C
Sbjct: 86  TPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGT--EC 145

Query: 281 SICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPV 315
           S+CL+EF E E  R+LPKC H FH  CID WL + ++CPLCR+PV
Sbjct: 146 SVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

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BLAST of CaUC03G051440 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.7e-14
Identity = 53/160 (33.12%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 166 PPPPPAELSVDVLSTLDLDF----LNFAGL--SALALMIVYFIFTCYEHKYWNRNGDIEG 225
           PPPPP+    D  S+    F    +   G+  SAL L+  Y + + Y H++   +     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTS----- 94

Query: 226 GRPPSSRTVAEPPTSEAGDSSSRRRAS-------TAVISTKLFQYGEGGLVGKNGDCSIC 285
               SS T+      E   SS++R ++       + + S  +++Y  G       DCS+C
Sbjct: 95  ----SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVC 154

Query: 286 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRS 313
           L EF E E  R+LPKC H FH  CID WL +  +CPLCR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of CaUC03G051440 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-12
Identity = 54/169 (31.95%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 163 PPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIV-YFIFTCYEHKYWNRNGDIEGGR 222
           PPPPPPP    +    ++  +  +   G+ A A ++V Y++F       W+R  DI G  
Sbjct: 16  PPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRI-DILGRF 75

Query: 223 PPSSR--------TVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVG--------K 282
             S R         V  P     G   S  RA       K +   +G   G        +
Sbjct: 76  SLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKR 135

Query: 283 NGDCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPV 315
           + +CS+CL EF + E  R++P C H+FH  CID WL N  +CPLCR+ V
Sbjct: 136 SQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of CaUC03G051440 vs. ExPASy Swiss-Prot
Match: O80927 (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 4.0e-11
Identity = 53/163 (32.52%), Postives = 75/163 (46.01%), Query Frame = 0


Query: 162 PPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGR 221
           PPPP P PP   S+D L+ L L F+  A ++  AL+   F            NG     R
Sbjct: 46  PPPPFPAPPR--SID-LTPLKLIFVVIAFVAVPALVYALFF-----------NGPCSSSR 105

Query: 222 PPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKN-------GDCSICLD 281
             SS +     TS + D +      T  I+        GG   K+        +CS+CL 
Sbjct: 106 RNSSSS----RTSSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLM 165

Query: 282 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVR 318
            FT+ +  R L +CKH FH  CI+ WL +  +CP+CR+ V V+
Sbjct: 166 VFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVK 190

[Close]

BLAST of CaUC03G051440 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 9.0e-11
Identity = 52/168 (30.95%), Postives = 70/168 (41.67%), Query Frame = 0


Query: 163 PPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRP 222
           PPPPP   A  S D  S      L  A +  LA   +   +  +  KY      + G   
Sbjct: 35  PPPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVF 94

Query: 223 PSSRTVA-----EPPTSEAGDSSSRRRAS-----------TAVISTKLFQYGEGGLVGKN 282
            SS   A            G   SR   S           T +    + +Y  G      
Sbjct: 95  GSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHT 154

Query: 283 GDCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPV 315
            DCS+CL EF++GE  R+LP+C H FH+ CID WL +  +CPLCR+ +
Sbjct: 155 TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANI 202

[Close]

BLAST of CaUC03G051440 vs. ExPASy TrEMBL
Match: A0A0A0M0H1 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 131/170 (77.06%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 156 TPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNG 215
           +PTTMPPPPPPP    EL VDVLSTLDLDFLNFAGLSALALM +YF+FTC E KYWNRNG
Sbjct: 8   SPTTMPPPPPPPD---ELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNG 67

Query: 216 DIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLD 275
           DIEGGR P+  T+ E P SE  DS  RR +S AVIST+LFQYG  GG++GKN DCSICLD
Sbjct: 68  DIEGGRLPTV-TMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLD 127

Query: 276 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           EFTEGEICRMLPKCKHVFHRFCID+WLPNER+CP+CRSPV+VR++YS PS
Sbjct: 128 EFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CaUC03G051440 vs. ExPASy TrEMBL
Match: A0A5A7VKM2 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00570 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 7.0e-67
Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 156 TPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNG 215
           +PTTMP PPPPP    +L V  LS LDLDFLN AGLSALA+M +YFIFTCYE K+WNRNG
Sbjct: 8   SPTTMPSPPPPPD---DLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 67

Query: 216 DIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLD 275
           DIEGGR P S T+ E P SE GDSS RR +S AVIST+LFQYG  GG++GKN DCSICLD
Sbjct: 68  DIEGGRLP-SETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLD 127

Query: 276 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           EFTEGEICRMLPKCKHVFHRFCIDQWLPNER+CP+CRSPV+VR++YS PS
Sbjct: 128 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CaUC03G051440 vs. ExPASy TrEMBL
Match: A0A5D3BEF0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002260 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 128/170 (75.29%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 156 TPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNG 215
           +PTTMP PPPPP    +L V  LS LDLDFLN AGLSALA+M +YFIFTCYE K+WNRNG
Sbjct: 8   SPTTMPSPPPPPD---DLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 67

Query: 216 DIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLD 275
           DIEGG+ PS  T+ E P SE GDSS RR +S AVIST+LFQYG  GG++GKN DCSICLD
Sbjct: 68  DIEGGQLPSV-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLD 127

Query: 276 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           EFTEGEICRMLPKCKHVFHRFCIDQWLPNER+CP+CRSPV+VR++YS PS
Sbjct: 128 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CaUC03G051440 vs. ExPASy TrEMBL
Match: A0A1S3C5T1 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 128/170 (75.29%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 156 TPTTMPPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNG 215
           +PTTMP PPPPP    +L V  LS LDLDFLN AGLSALA+M +YFIFTCYE K+WNRNG
Sbjct: 8   SPTTMPSPPPPPD---DLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 67

Query: 216 DIEGGRPPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLD 275
           DIEGG+ PS  T+ E P SE GDSS RR +S AVIST+LFQYG  GG++GKN DCSICLD
Sbjct: 68  DIEGGQLPSV-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLD 127

Query: 276 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           EFTEGEICRMLPKCKHVFHRFCIDQWLPNER+CP+CRSPV+VR++YS PS
Sbjct: 128 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CaUC03G051440 vs. ExPASy TrEMBL
Match: A0A6J1I603 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.6e-61
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 167 PPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPSSR 226
           PPPP ELSVDVLST+DLDFLNFAGL  LA+ I+YFI+T YEHKYWNR+ DIEGGR  +  
Sbjct: 3   PPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAA-- 62

Query: 227 TVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICRMLP 286
                 T+  G S   RR +TAVIST+LFQYGE G+ GKN DCSICLDEF EGEICRMLP
Sbjct: 63  ------TASVGSSGEDRRWATAVISTRLFQYGERGMEGKNADCSICLDEFVEGEICRMLP 122

Query: 287 KCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 325
           KCKHVFHRFCIDQWLPNERHCPLCRSPVHVR I+++ S
Sbjct: 123 KCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of CaUC03G051440 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-19
Identity = 60/165 (36.36%), Postives = 85/165 (51.52%), Query Frame = 0


Query: 161 PPPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGG 220
           PPPPPPPPPP ELS+ + +++ +      G   L L +V+F+   Y H    R       
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICV-----VGSIILFLFLVFFL---YLHITQQRRISAASV 85

Query: 221 RPPSSRTVAEPPTSEAGDSS-----------SRRRASTAVISTKLFQYGEGGLVGKNGDC 280
            P  +    +   +E  D S              R++   I+   F+ GEG + G   +C
Sbjct: 86  TPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGT--EC 145

Query: 281 SICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPV 315
           S+CL+EF E E  R+LPKC H FH  CID WL + ++CPLCR+PV
Sbjct: 146 SVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of CaUC03G051440 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-17
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 247 TAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERH 306
           T + S K+ QY +   V +  DCS+CL EF E E  R+LPKCKH FH +CID WL +  +
Sbjct: 195 TVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTN 254

Query: 307 CPLCRSPV 315
           CPLCR+P+
Sbjct: 255 CPLCRAPI 262

[Close]

BLAST of CaUC03G051440 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.1e-15
Identity = 53/160 (33.12%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 166 PPPPPAELSVDVLSTLDLDF----LNFAGL--SALALMIVYFIFTCYEHKYWNRNGDIEG 225
           PPPPP+    D  S+    F    +   G+  SAL L+  Y + + Y H++   +     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTS----- 94

Query: 226 GRPPSSRTVAEPPTSEAGDSSSRRRAS-------TAVISTKLFQYGEGGLVGKNGDCSIC 285
               SS T+      E   SS++R ++       + + S  +++Y  G       DCS+C
Sbjct: 95  ----SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVC 154

Query: 286 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRS 313
           L EF E E  R+LPKC H FH  CID WL +  +CPLCR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of CaUC03G051440 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-13
Identity = 54/169 (31.95%), Postives = 77/169 (45.56%), Query Frame = 0


Query: 163 PPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIV-YFIFTCYEHKYWNRNGDIEGGR 222
           PPPPPPP    +    ++  +  +   G+ A A ++V Y++F       W+R  DI G  
Sbjct: 16  PPPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRI-DILGRF 75

Query: 223 PPSSR--------TVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVG--------K 282
             S R         V  P     G   S  RA       K +   +G   G        +
Sbjct: 76  SLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKR 135

Query: 283 NGDCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPV 315
           + +CS+CL EF + E  R++P C H+FH  CID WL N  +CPLCR+ V
Sbjct: 136 SQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of CaUC03G051440 vs. TAIR 10
Match: AT2G37580.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-12
Identity = 53/163 (32.52%), Postives = 75/163 (46.01%), Query Frame = 0


Query: 162 PPPPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGR 221
           PPPP P PP   S+D L+ L L F+  A ++  AL+   F            NG     R
Sbjct: 46  PPPPFPAPPR--SID-LTPLKLIFVVIAFVAVPALVYALFF-----------NGPCSSSR 105

Query: 222 PPSSRTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKN-------GDCSICLD 281
             SS +     TS + D +      T  I+        GG   K+        +CS+CL 
Sbjct: 106 RNSSSS----RTSSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLM 165

Query: 282 EFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVR 318
            FT+ +  R L +CKH FH  CI+ WL +  +CP+CR+ V V+
Sbjct: 166 VFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVK 190

The following BLAST results are available for this feature:

BLAST of CaUC03G051440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653247.1	9.9e-92	59.62	hypothetical protein Csa_019633 [Cucumis sativus]	[more]
XP_038895799.1	2.9e-83	93.79	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]
XP_004151031.2	2.2e-67	77.06	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]
KAA0067737.1	1.4e-66	75.88	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_008457570.2	7.2e-66	75.29	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 ...	[more]

BLAST of CaUC03G051440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	1.3e-17	36.36	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9LF64	8.7e-14	33.13	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LSW9	2.8e-12	31.95	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
O80927	4.0e-11	32.52	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2	[more]
Q7XLY8	9.0e-11	30.95	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CaUC03G051440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0H1	1.1e-67	77.06	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE...	[more]
A0A5A7VKM2	7.0e-67	75.88	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BEF0	3.5e-66	75.29	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C5T1	3.5e-66	75.29	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]
A0A6J1I603	2.6e-61	73.42	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 P...	[more]

BLAST of CaUC03G051440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10380.1	9.2e-19	36.36	RING/U-box superfamily protein	[more]
AT4G33565.1	1.7e-17	51.47	RING/U-box superfamily protein	[more]
AT5G17600.1	6.1e-15	33.13	RING/U-box superfamily protein	[more]
AT5G43420.1	2.0e-13	31.95	RING/U-box superfamily protein	[more]
AT2G37580.1	2.9e-12	32.52	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 269..310 e-value: 3.6E-7 score: 39.8 coord: 89..130 e-value: 1.4E-4 score: 31.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 268..311 e-value: 1.7E-12 score: 47.5 coord: 87..131 e-value: 1.2E-11 score: 44.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 269..311 score: 12.872856
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 89..131 score: 12.341748
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 57..135 e-value: 4.6E-18 score: 66.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 245..318 e-value: 3.8E-20 score: 72.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..245
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 192..312 coord: 62..132
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 192..312 coord: 62..132
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 269..311 e-value: 2.91613E-14 score: 64.1701
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 263..317
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 83..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G051440.1	CaUC03G051440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane