CaUC03G051400 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G051400
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	methyl-CpG-binding domain-containing protein 5
Location	Ciama_Chr03: 1579330 .. 1582199 (-)
RNA-Seq Expression	CaUC03G051400
Synteny	CaUC03G051400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTATTAGTGTAAAGTGGGAAAGACAATAAATAATCTCCCCTGTTTCTAACGTCCTCTTTCCCGTTTCTTCCTTCCTTCTTCTTCCCCCAAACCCCCAACCCACATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGATCCGACCCGACCCGATTTACCTTTCTCCCACCACCTCCCCCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCACCGTCCCATCCCGAACCCTACCTTCTTCTCCTCCCAACCACGCCCGAGATCTTGACCGGACTCCTCGCAAGAAATCCGATACTTCTTCCACTCGACGATCTCCATTACGTGCCCAGCCTCTCAACTCTTACAATCTCCCTTCCGATTCTCCCGCTCCCAGGAATGGAGATTCTCCCGCATCCAAGAAGGTCTCGGCCTCTACCTCCCGAGGAACCGACGCCTCCTCCAAATCTGCCTTGTCCGAGAGGCCTAATTGGCTGCCCCCGGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACAGCTGGAACCGTTGATAAGGTGAATTGAATCTTTCTTTTATCTCTTTTAATCTCGACTTCCTTCCTCTTTACTGCCGTTTCCTGTTCCAAGTGGAGATAAATTTTTGTTTTGGTAATTAATTGACCATGCAACTAGTACTCTATTCCATGCCTCACGCTACCGAACTTCTCGGAATGACTGATGATAGAACAGAGGTTTACCGTTGCTGGAACTACTTTCCTTCTACTTATGAATGATTTCTGTGATACCTTTACTACGTTTGGAACTAAGGATTAACACATGAACCAATTGGGAAGAAGTTATCTTATCATTGTGCTACTGAAAATGATCTTTTGTTTGTAGTACCAAGTACCATTCCCTTGTCTGTTGTTAACTCATCAATTTTCGGGGAAATGAGGTATATCAAGTAGATAACGGTTTAATAACTACTCTGGATGTGATCATCTGAAAAATGGATCACTAGCGAAATTCGGTGTCATGTTGATGGGAATTGCAGTTTTAGTTACCTGATTGGGAATGAAGAAGTTCCATAGGAACAATTGAACTATAGGAATTCATTTCATTCTCATGATCGGGCTCTTCCTCTCTCTATAAATTTGTTTGCCCTTTACTTGGTGTATAGTATTTGAGTATGTTCTGGTGCACGCTTTTGTATGAGCTCATTTAACAATCCAAGCAATTCTGTCATGCAGTTAATGTAACAAGTCTTCATGGTCCTTTTCTTTGGATGGTGAACAAGCCTCGATGAACTTTGATATAGATTTATTTGGATTTTGGTACACTCTAGTTAGCTACTCCCCGTTTATGTGAATTCAATTAGGACAACAGAGTTTGGTTGATTAGAATGAAGACCATGATTGGGAAAAGAATAACAAAAACCTCCACTGTTATGTTGATAACCAGTCCATAAACGGTCAGGATCAAATTTGTATGATAGTGTGATTATTTGACTTCTCCATGCATGTTGATGAATAGATTTGGAGTCGATACTTGGACTCTTGTATGAATTGTGCAGCTTATAGGATATGTGACTAGTGCTTGGTGCTTGGGACTGCACCTCAATTTCATATTCTTCATTTTCCCTGTTTAAAACTACATTGGGATTGTTGATAGACAAAACAAGCAAAAGCAAGTTAAGTACAGTTTACAAGTACCATATAGCAATTATTGAGAACTGAGTTTGAGTGTCGTATGGAAATTGCTTATGAATTGAGTTCATGTCATGCTGAATTAATTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGGCTCCCTTTCCTTGTTATCCTGTTTTAAATATTTATCAAACAAACAAACAGTAAAGAATGTCAAAAGAATCTAATCTATCCCCATGTCCCTTGCAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCAACGGTGAGTTGAAAGCTATCATTCCTTCTTTGGCACCCAATGGGATATTCCGATCTTCTCATCCATTTTTCAATTTTCCTGATTTGCAACTCTGCAGTCTACTGACGGTTCCGAAGAACCCAAGGGCAAGAAATCTTCCAGCAACGCTAAAACTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAGGGTCGAATGGGTTCTCACAGACCCTTCTAAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCCGAATGTACTAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGAAGGCAACTTCATCCCTTTTGGACATTTTTTGGGACAACCTATTCAGGCAAGAACCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCTAATGGCTTCCCATCTGCAATTCTTTTGGTCTTTTTTTTTTCTTTGGAAGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTGAAAACCAGATTTGGTTAGGAAAAATTACTGCAAAAACATGACTCTATCTAACTGACTATGTCTTGGACTGGAAGAAGTGATCAATTTGTGTAGAAGAGGGCTGCTCAGTTCATTCTCAATCAAAAGTATTTGAATGAGGGGCTATTTCATTTTGATTCTATGCTCTTGCTCTTCATTTTGATCTACATCTGTATTTCTTTTATGATTCAAATATTTTTTTTTGGCAATGATATTGATGTTGCATAGAATTAATGAAAACTACCAATTCTAATGATAAAGACTAGAATTAGGAAGAAATTTATGGATTGAAATAAAAACAAAGTGGAAGAATTGTAGTTTGTCTGTTTTGCAAATCATGCC

mRNA sequence

TTGTTATTAGTGTAAAGTGGGAAAGACAATAAATAATCTCCCCTGTTTCTAACGTCCTCTTTCCCGTTTCTTCCTTCCTTCTTCTTCCCCCAAACCCCCAACCCACATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGATCCGACCCGACCCGATTTACCTTTCTCCCACCACCTCCCCCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCACCGTCCCATCCCGAACCCTACCTTCTTCTCCTCCCAACCACGCCCGAGATCTTGACCGGACTCCTCGCAAGAAATCCGATACTTCTTCCACTCGACGATCTCCATTACGTGCCCAGCCTCTCAACTCTTACAATCTCCCTTCCGATTCTCCCGCTCCCAGGAATGGAGATTCTCCCGCATCCAAGAAGGTCTCGGCCTCTACCTCCCGAGGAACCGACGCCTCCTCCAAATCTGCCTTGTCCGAGAGGCCTAATTGGCTGCCCCCGGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACAGCTGGAACCGTTGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCAACGTCTACTGACGGTTCCGAAGAACCCAAGGGCAAGAAATCTTCCAGCAACGCTAAAACTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAGGGTCGAATGGGTTCTCACAGACCCTTCTAAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCCGAATGTACTAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGAAGGCAACTTCATCCCTTTTGGACATTTTTTGGGACAACCTATTCAGGCAAGAACCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCTAATGGCTTCCCATCTGCAATTCTTTTGGTCTTTTTTTTTTCTTTGGAAGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTGAAAACCAGATTTGGTTAGGAAAAATTACTGCAAAAACATGACTCTATCTAACTGACTATGTCTTGGACTGGAAGAAGTGATCAATTTGTGTAGAAGAGGGCTGCTCAGTTCATTCTCAATCAAAAGTATTTGAATGAGGGGCTATTTCATTTTGATTCTATGCTCTTGCTCTTCATTTTGATCTACATCTGTATTTCTTTTATGATTCAAATATTTTTTTTTGGCAATGATATTGATGTTGCATAGAATTAATGAAAACTACCAATTCTAATGATAAAGACTAGAATTAGGAAGAAATTTATGGATTGAAATAAAAACAAAGTGGAAGAATTGTAGTTTGTCTGTTTTGCAAATCATGCC

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCGTTTCCGGACCCCGACTGGCCCCGTCAAGATCCGACCCGACCCGATTTACCTTTCTCCCACCACCTCCCCCCGGACCCTCTCCTCGACGCCGGCTCCTTCATCGACTCCTCCACCGTCCCATCCCGAACCCTACCTTCTTCTCCTCCCAACCACGCCCGAGATCTTGACCGGACTCCTCGCAAGAAATCCGATACTTCTTCCACTCGACGATCTCCATTACGTGCCCAGCCTCTCAACTCTTACAATCTCCCTTCCGATTCTCCCGCTCCCAGGAATGGAGATTCTCCCGCATCCAAGAAGGTCTCGGCCTCTACCTCCCGAGGAACCGACGCCTCCTCCAAATCTGCCTTGTCCGAGAGGCCTAATTGGCTGCCCCCGGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACAGCTGGAACCGTTGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCAACGTCTACTGACGGTTCCGAAGAACCCAAGGGCAAGAAATCTTCCAGCAACGCTAAAACTGCTCCTTTAAACTTTGATTTCTTCAATGTGCCTGAAAGGGTCGAATGGGTTCTCACAGACCCTTCTAAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCCGAATGTACTAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

Protein sequence

MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLLGRSKV

Homology

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BLAST of CaUC03G051400 vs. NCBI nr
Match: XP_038893740.1 (LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa hispida])

HSP 1 Score: 449.1 bits (1154), Expect = 2.6e-122
Identity = 233/270 (86.30%), Postives = 248/270 (91.85%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSST--VPSRTLPSSPPNH 60
           MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSF+DSS+  +P+ TLPS     
Sbjct: 26  MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFVDSSSSALPAPTLPS----- 85

Query: 61  ARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKV--SASTSRG- 120
            RDLDRTPRKK+++SST RSPLRA PLNS+NLP DS APRNGDSPA+KKV  SAS+SRG 
Sbjct: 86  -RDLDRTPRKKAESSSTPRSPLRAGPLNSFNLPPDSSAPRNGDSPATKKVSLSASSSRGT 145

Query: 121 TDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLE 180
           TDAS KSALSERPNWLPPGWVV+DRVRSSGATAGTVDKYYFDP+SNRRFRSKIEVLYFLE
Sbjct: 146 TDASLKSALSERPNWLPPGWVVQDRVRSSGATAGTVDKYYFDPISNRRFRSKIEVLYFLE 205

Query: 181 TGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDA 240
           TGTLRKRKKSLDGNPTSTDGSEEPK KKSSSNAK+APLNFDFFNVPE+VEWVLTDPSKDA
Sbjct: 206 TGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSKDA 265

Query: 241 WTPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           WTPFI +EKV E TKR WVGAFQLLGRSKV
Sbjct: 266 WTPFIGSEKVRESTKRAWVGAFQLLGRSKV 289

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BLAST of CaUC03G051400 vs. NCBI nr
Match: XP_011658162.2 (methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hypothetical protein Csa_019834 [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 1.4e-112
Identity = 223/269 (82.90%), Postives = 230/269 (85.50%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFIDSST---VPSRTLPSSPP 60
           MSASGTSFPD DWPR  DPTRPDLPFSHHLPPDPLL AGSFIDSST    P+ +   SP 
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGT 120
             +RDLDRTPRK   TSSTRRSPLR  PLNS+          NGDS  SKKVSAS S   
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSF----------NGDSSPSKKVSASNS--- 143

Query: 121 DASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLET 180
            ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLET
Sbjct: 144 -ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLET 203

Query: 181 GTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDAW 240
           GTLRKRKKSLDGNP+STD SEEPKGKKSSSNAKTAPLNFDFFNVPE+VEWVLTDPS+DAW
Sbjct: 204 GTLRKRKKSLDGNPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAW 263

Query: 241 TPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           TPFIDNEKVPE TKREWVGAFQLLGRSKV
Sbjct: 264 TPFIDNEKVPESTKREWVGAFQLLGRSKV 278

[Close]

BLAST of CaUC03G051400 vs. NCBI nr
Match: XP_022948610.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 416.4 bits (1069), Expect = 1.9e-112
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   R K DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPK KKSSSNAK+APLNFDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSK+
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of CaUC03G051400 vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 4.1e-112
Identity = 218/265 (82.26%), Postives = 228/265 (86.04%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD T RKK DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGTHRKKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPK KKSSSNAK+APLNFDFFNVPE+VEWVLTDPS++ WTPFI
Sbjct: 181 KRKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEVWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSKV
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of CaUC03G051400 vs. NCBI nr
Match: KAA0067742.1 (methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97402.1 methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 414.5 bits (1064), Expect = 7.1e-112
Identity = 224/276 (81.16%), Postives = 230/276 (83.33%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFIDS----------STVPSR 60
           MSASGTS PD DWPR  DPTRPDLPFSHHLPPDPLL AGSFIDS          STVPS 
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 61  TLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVS 120
           TLPS      RDLDRTPRK   TSSTRRSPLR  PLNS+          NGDS  SKKVS
Sbjct: 61  TLPS------RDLDRTPRKTPQTSSTRRSPLRPDPLNSF----------NGDSSPSKKVS 120

Query: 121 ASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 180
           AS S    ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE
Sbjct: 121 ASNS----ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 180

Query: 181 VLYFLETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLT 240
           VLYFLETGTLRKRKKSLDGNP+STDGS+EPKGKKSSSNAK+APLNFDFFNVPE+VEWVLT
Sbjct: 181 VLYFLETGTLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLT 240

Query: 241 DPSKDAWTPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           DPS+DAWTPFIDNEKVPE TK EWVGAFQLLGRSKV
Sbjct: 241 DPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 256

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BLAST of CaUC03G051400 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28
Identity = 71/174 (40.80%), Postives = 96/174 (55.17%), Query Frame = 0


Query: 95  PAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKY 154
           P P N  +P   K     + G D           NWLPP W  E RVR+SG  AGTVDK+
Sbjct: 10  PPPENPATPVDSKSRKRATPGDD-----------NWLPPDWRTEIRVRTSGTKAGTVDKF 69

Query: 155 YFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKG---KKSSSNAKTA 214
           Y++P++ R+FRSK EVLY+LE GT +K+      N  S     E +G   +++ SN K  
Sbjct: 70  YYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVT 129

Query: 215 -----PLNFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
                PLNFDF NVPE+V W   + S++AW PFI + K+ E   ++W   F L+
Sbjct: 130 EPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of CaUC03G051400 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-27
Identity = 81/239 (33.89%), Postives = 126/239 (52.72%), Query Frame = 0


Query: 30  PPDPLLDAGSFIDSSTVPSRTLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYN 89
           PPDPLL +G+FI  S+    TL                     SS +R P++        
Sbjct: 10  PPDPLLASGAFI--SSAGDGTL--------------------DSSAKRRPIQ----GGIG 69

Query: 90  LPSDSPAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAG 149
           +     + R G +  + +V    +  T++ S+   +   NWLPPGW VED++R+SGATAG
Sbjct: 70  ISGSGESVRIGMANGTDQV----NHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAG 129

Query: 150 TVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAK 209
           +VDKYY++P + R+FRS+ EVLY+LE GT ++  K  +    + D  E   G+ S+   +
Sbjct: 130 SVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFE---GQGSNRVTR 189

Query: 210 TA--------PLNFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
           TA        PL+FDF N P++V W + +  ++ W P I + KV +  +R+W  AF  +
Sbjct: 190 TATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of CaUC03G051400 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 9.0e-113
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   R K DTS+T RSPL A PLN   LP DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPK KKSSSNAK+APLNFDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSK+
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of CaUC03G051400 vs. ExPASy TrEMBL
Match: A0A5D3BC42 (Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002210 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.4e-112
Identity = 224/276 (81.16%), Postives = 230/276 (83.33%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFIDS----------STVPSR 60
           MSASGTS PD DWPR  DPTRPDLPFSHHLPPDPLL AGSFIDS          STVPS 
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 61  TLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVS 120
           TLPS      RDLDRTPRK   TSSTRRSPLR  PLNS+          NGDS  SKKVS
Sbjct: 61  TLPS------RDLDRTPRKTPQTSSTRRSPLRPDPLNSF----------NGDSSPSKKVS 120

Query: 121 ASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 180
           AS S    ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE
Sbjct: 121 ASNS----ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 180

Query: 181 VLYFLETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLT 240
           VLYFLETGTLRKRKKSLDGNP+STDGS+EPKGKKSSSNAK+APLNFDFFNVPE+VEWVLT
Sbjct: 181 VLYFLETGTLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLT 240

Query: 241 DPSKDAWTPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           DPS+DAWTPFIDNEKVPE TK EWVGAFQLLGRSKV
Sbjct: 241 DPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 256

[Close]

BLAST of CaUC03G051400 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.4e-112
Identity = 216/265 (81.51%), Postives = 227/265 (85.66%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPRQDPTRPDLPFSHHLPPDPLLDAGSFIDSSTVPSRTLPSSPPNHAR 60
           MSASGTSFPDPDWPRQ  TRPDLP  HH PPDPLL +GSFIDSST    TLPSS P++AR
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARCGTLPSS-PDYAR 60

Query: 61  DLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGTDASS 120
           DLD   RKK DTS+T RSPL A PLN   L  DSP P NGDS A KKVSA  SRGTDAS 
Sbjct: 61  DLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSA--SRGTDASP 120

Query: 121 KSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLR 180
           KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTLR
Sbjct: 121 KSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLR 180

Query: 181 KRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDAWTPFI 240
           KRKKSLDGN  S DGSEEPK KKSSSNAK+APLNFDFFNVPE+VEWVLTDPS++AWTPFI
Sbjct: 181 KRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFI 240

Query: 241 DNEKVPECTKREWVGAFQLLGRSKV 266
           +NEKVPE TKREWV AFQLLGRSKV
Sbjct: 241 NNEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of CaUC03G051400 vs. ExPASy TrEMBL
Match: A0A1S3C6A2 (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.4e-112
Identity = 224/276 (81.16%), Postives = 230/276 (83.33%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFIDS----------STVPSR 60
           MSASGTS PD DWPR  DPTRPDLPFSHHLPPDPLL AGSFIDS          STVPS 
Sbjct: 24  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 83

Query: 61  TLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVS 120
           TLPS      RDLDRTPRK   TSSTRRSPLR  PLNS+          NGDS  SKKVS
Sbjct: 84  TLPS------RDLDRTPRKTPQTSSTRRSPLRPDPLNSF----------NGDSSPSKKVS 143

Query: 121 ASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 180
           AS S    ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE
Sbjct: 144 ASNS----ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIE 203

Query: 181 VLYFLETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLT 240
           VLYFLETGTLRKRKKSLDGNP+STDGS+EPKGKKSSSNAK+APLNFDFFNVPE+VEWVLT
Sbjct: 204 VLYFLETGTLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLT 263

Query: 241 DPSKDAWTPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           DPS+DAWTPFIDNEKVPE TK EWVGAFQLLGRSKV
Sbjct: 264 DPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 279

[Close]

BLAST of CaUC03G051400 vs. ExPASy TrEMBL
Match: A0A0A0LXE4 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.8e-112
Identity = 222/269 (82.53%), Postives = 229/269 (85.13%), Query Frame = 0


Query: 1   MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFIDSST---VPSRTLPSSPP 60
           MSASGTSFPD DWPR  DPTRPDLPFSHHLPPDPLL AGSFIDSST    P+ +   SP 
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  NHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYNLPSDSPAPRNGDSPASKKVSASTSRGT 120
             +RDLDRTPRK   TSSTRRSPLR  PLNS+          NGDS  SKKVSAS S   
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSF----------NGDSSPSKKVSASNS--- 143

Query: 121 DASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLET 180
            ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLET
Sbjct: 144 -ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLET 203

Query: 181 GTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPERVEWVLTDPSKDAW 240
           GTLRKRKKSLDGNP+STD SEEPKGKKSSSNAKTAPLNFDFFNVPE+VEWVLTDPS+DAW
Sbjct: 204 GTLRKRKKSLDGNPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAW 263

Query: 241 TPFIDNEKVPECTKREWVGAFQLLGRSKV 266
           TPFIDNEKVPE TK EWVGAFQLLGRSKV
Sbjct: 264 TPFIDNEKVPESTKCEWVGAFQLLGRSKV 278

[Close]

BLAST of CaUC03G051400 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-29
Identity = 71/174 (40.80%), Postives = 96/174 (55.17%), Query Frame = 0


Query: 95  PAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKY 154
           P P N  +P   K     + G D           NWLPP W  E RVR+SG  AGTVDK+
Sbjct: 10  PPPENPATPVDSKSRKRATPGDD-----------NWLPPDWRTEIRVRTSGTKAGTVDKF 69

Query: 155 YFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKG---KKSSSNAKTA 214
           Y++P++ R+FRSK EVLY+LE GT +K+      N  S     E +G   +++ SN K  
Sbjct: 70  YYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVT 129

Query: 215 -----PLNFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
                PLNFDF NVPE+V W   + S++AW PFI + K+ E   ++W   F L+
Sbjct: 130 EPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of CaUC03G051400 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 125.2 bits (313), Expect = 8.0e-29
Identity = 81/239 (33.89%), Postives = 126/239 (52.72%), Query Frame = 0


Query: 30  PPDPLLDAGSFIDSSTVPSRTLPSSPPNHARDLDRTPRKKSDTSSTRRSPLRAQPLNSYN 89
           PPDPLL +G+FI  S+    TL                     SS +R P++        
Sbjct: 10  PPDPLLASGAFI--SSAGDGTL--------------------DSSAKRRPIQ----GGIG 69

Query: 90  LPSDSPAPRNGDSPASKKVSASTSRGTDASSKSALSERPNWLPPGWVVEDRVRSSGATAG 149
           +     + R G +  + +V    +  T++ S+   +   NWLPPGW VED++R+SGATAG
Sbjct: 70  ISGSGESVRIGMANGTDQV----NHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAG 129

Query: 150 TVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAK 209
           +VDKYY++P + R+FRS+ EVLY+LE GT ++  K  +    + D  E   G+ S+   +
Sbjct: 130 SVDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFE---GQGSNRVTR 189

Query: 210 TA--------PLNFDFFNVPERVEWVLTDPSKDAWTPFIDNEKVPECTKREWVGAFQLL 261
           TA        PL+FDF N P++V W + +  ++ W P I + KV +  +R+W  AF  +
Sbjct: 190 TATVPPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

The following BLAST results are available for this feature:

BLAST of CaUC03G051400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893740.1	2.6e-122	86.30	LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa h...	[more]
XP_011658162.2	1.4e-112	82.90	methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hyp...	[more]
XP_022948610.1	1.9e-112	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moscha...	[more]
XP_023523162.1	4.1e-112	82.26	methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]	[more]
KAA0067742.1	7.1e-112	81.16	methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97...	[more]

BLAST of CaUC03G051400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SNC0	2.3e-28	40.80	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LTJ1	1.1e-27	33.89	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CaUC03G051400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAC7	9.0e-113	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita mosc...	[more]
A0A5D3BC42	3.4e-112	81.16	Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1KC76	3.4e-112	81.51	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]
A0A1S3C6A2	3.4e-112	81.16	methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LXE4	5.8e-112	82.53	MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV...	[more]

BLAST of CaUC03G051400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46580.1	1.6e-29	40.80	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	8.0e-29	33.89	methyl-CPG-binding domain 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 97..214 e-value: 5.1E-21 score: 77.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..75
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 106..251
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 106..251
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 124..223 e-value: 3.8E-13 score: 48.9
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 121..193 score: 14.415644
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 107..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G051400.1	CaUC03G051400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding