CaUC03G051040 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G051040
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC2
Location	Ciama_Chr03: 1144840 .. 1148732 (-)
RNA-Seq Expression	CaUC03G051040
Synteny	CaUC03G051040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGTATCTAAAACTTAAAAACCGGATTTTGACCGGTTTGGTTGACCGACCAGCTTGGTAGCGGTTCAAAACCCGAGCCAGTATGATCGAATCGGCCTGTCAACATCTGTGGCTCAAAAAAAGAGCCTAAACCCCATTCAGCTCCCTTAGTTTTTGTGATCAAACCCGCCGTCTCTGCTCTCTCCATCCTCCAACAACTCACCGGCCCGCCGGCCACCGACCCAGCAACTCCATCTCTTCTCGCCCTCCTTCTCTCTCTCGGTAATCAGTTCTCACGCTCGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGATATATATATATATATATGGTTGGTTCACCCATCAACAAGTGAGCCATGCGAATGTTTGTTGCTTATTCCCCGTTCGCGTGGAAGCATTAGCTGTGTTCGTCCTTGTTGAATTGACTGATTTTTTTCAGTTTTAGTTATGAAGAATCTAATTGAATTTGTGTCAAAAGATGGGTATTTCAAACCATCTAATTGTAGGTTGTGTGGACGTAATTTTCTTTGTGTTTATAGTTACGTTAAGGTATGGTGTAGTTATTTTGGTTAGTGTTCAATTGTTGGTGCTTTACTGAAAACTTGTTTAGTCATGTCGCTTGGAAACTAAAGAATAGTGAATTGATCTGAAATTTTAGTTACACACCAGTACTATCCTATTAGGGAGAACTAGAATATATGAAAGAGGTCCAATGCTGCATGCCCAAAACCTAAAAACTGAACTGAATGACTCCACTAATGTGTGAGCTCATGTATTAGTTTCGATTTACAATATCTAGAGGTGATGATACTATAGGAGTTAGCTTAAGATCTCCTAAGTTGTAAACTTGGCCTAGTAACAAAAAGAGAGATATAGTTTCAATAAATGGCTAAAAGGTCATAGGTTCAATCCATAATGGTCACCTACTTAAGAATTAATATCCTATGAGTTTGCTTGACACCCAAATGTTACCGGATCAAGTAGGTGTCTTGTGAGATTAGTCGAGGTACGCATAAACTGGTCCGGACAATCATGGATAAAAAAAAAAAAAAAAGAAAAAAAAAACTACTAAGTTGTAAGATTGGAGCAAATCATGTTGATTTGTTCCTTAGAACTTTTTAGATTAAAAACCTAATAGGTATCCCTTATGTAAAAATGATGCCTTGCATCATGGTTTTCTTCTCTTCTTACTACAATCATTACTCAAGGTGCCCTGTGGAACTAGACGTGGTACTCTAGCTCTAAATTCAAATACTTACTGTGTAAGAGAGTCATAGTTAATTCTCCCCAAAAGTGCAATTGGTAGGAAAGAATGCAATGCAAGGAGTAATGATACGTTTATTGCTCAATAGCACACTCTAAACATCTTCATACTCAGGCCCTAATACTTCAATGGCTTCTCCTACTAGCCCATGCCTCTCTTAGGAGTAGCATCTGGACAATTAAAGCTGGTAAGAATAGTAATATAGTCTCGAAGAAATAACTTATCAAAAGTTTCCTCTTCGAGCTACTTATATGTATGTATTATAGATTAGAAGTTTTTGGGGATAATTGAATAATCATGAAATTAGTCTAGCTAATTTTCTGTGCCTGTACTTCTGTTAACTCCCCAAGATTGATATTTCAATTCTTAAGAGTTGGTGTGAAAGAGATTTCAACTTCTTGGCTCCGTTGGTTTTGTAGAATTTTGGCTGATTTTTTTTGGTTTATTTTCCTTGATCTTCTCAATTTATTTGCCTTCAGTTTTAATCAAGATGCTGATTCTGTTTGGTTTTTCATTTTTCTTATAGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCAATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGAGTACGAGCTCTTATTCAGTTATTCTTGGTTGAATATTTTGAAATGTTAACAAGGCATGCACATGCCAAAGAATTTGCAGTTCTTGGTCCGCTTGTCATATCTAATCATTTCATCTTGACTTCTATTAATTCATGAGATAAAGAATTAAATAGATTATTAGTTCTTGTGAACATATCATTAACAAGGTCCTTGAAGAATTAATTAGGTCCTTGGATAACCCGTGATGCATAAATTGATAAATAATGTACCACCACTGCATGTGTTAATAATAATATGGGTTCACCTATTAAAGCAAGAGGAATTGATAATTAGGTCTTGTGAAAATTGTTCATTCAGAAGAGTTATAAATATTGTTGTCATCTTTTTTCACCTATTAAAGCAAGAGGAATTGATAGTTTGGTTGTTTTTTCTTTCCCCCTTCTTAAAAAAGCTGGTTTAGATTGTTGTTGTTCTTTAATAAACCAGACTTATAACATCATCTTGCAGTCCAAGAGTGACATTTTGTGGGTACAGCATTCCTCATCCTTCAGACAATCGAGTTAATATTAGAGTCCAGACAACAGGTAATATTTTGGGTAGTTTGACTATCTGAAGTGTAACCAACTGGTTTCAATTTAGGACATTGTTTCTAATGATTAGATTTGTTCTTTTCTGGTTTTTCTTCTTTACACACATCCAATCTATGCATTCATGAGATATATAGCTTATATGCGAAGTGTCATTCTTCTAAGAAAAGTCTTTAGATGAAATCACTTTTTTTGAAGAATATATGTTGGATCCTTGTTGCTTTTGCTAGAAGTAGTTCCCCGTTATTTTTATAAGTATAAAAAAAAATATATATATATATTTGTACTTTAACAAAGGGTCGTGAAGTTTCATAACCTTAACGAAATTCAATCATGTTTCTAAAGTTTGAAAAGCTGTTGTACGTAATTCTTACCATCAACACTAATAACTCAACATTGTGGGACAAGTGTTAGAGAAACATTAGTTGATTTGACATAATGTGATAGGAAGTGGATAACTATAGAAAAAAAAGGTTATAGCACGTAAAAGAGATTTGATACATTGCTTTGAAAAGATAGTATGTTGCCAGTTTATTATATTTCGTTACCCATTTTGTTATGCAATGCTATAAGTGTATCAATCAATATTTGTTCTGTAGGACATGTCACACTATTGTCTAGTCAATAATGTTCATTACCATGACTACACATGATTAATTACACTTCAAAGTTTGAAAGTCATATTTAAAACTTTTTAAAATGAAAATACCTGTTAGGCACAACTATCAAGTTACTTTAGAACTCAAGGACATAGTTGTACAACCTATAGAATAGATCCTATTCAAAAGGGTCCTAAATTTATAATTTAAACTTGAACATATGTGCATACCCTTTTGCAACTGTGAAGTAAAACCCAACCAACCAAGATGTTGAGGTTGAGGCTAGACAAATAGTGTCCCAAATGAATGGTCTTTTACTCTTTCCCCATAGTTGGGGTTGGGGAACCCAATGATCTGCAGTTGAAAGTAGGCAAAGTTATTATTGATTACTAGGGAAAAGAAAGCAAAGCACATGGAAATGGTAGGGGCAATATATAGCAAACAGAAGGCTGTTTGTTGAAGTGACTATGCATTATTAGAATTAGCATTAGCATTAGAGATACTGATGAAAGGGATTTTCTTGATTGAACATGGCAGGTGATCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATATCAAACTGCCTGTTGGAGACGTTAATATCAAATAGAATGGGACTTTTCCTTTTTCTTTGGCTTGTAGTTTACTTACTGTTATCTCAAATGCTGGCCGATGCCCTCCTTAGGGATTTCATGTTAAATATTATATATTGTAAGAAACACGTCTTATCAAATTAGATTAAATGGCTTTGTGAGAGGTCTCTTATT

mRNA sequence

ATGTATGTGTATCTAAAACTTAAAAACCGGATTTTGACCGCTCCCTTAGTTTTTGTGATCAAACCCGCCGTCTCTGCTCTCTCCATCCTCCAACAACTCACCGGCCCGCCGGCCACCGACCCAGCAACTCCATCTCTTCTCGCCCTCCTTCTCTCTCTCGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCAATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTTTGTGGGTACAGCATTCCTCATCCTTCAGACAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATATCAAACTGCCTGTTGGAGACGTTAATATCAAATAGAATGGGACTTTTCCTTTTTCTTTGGCTTGTAGTTTACTTACTGTTATCTCAAATGCTGGCCGATGCCCTCCTTAGGGATTTCATGTTAAATATTATATATTGTAAGAAACACGTCTTATCAAATTAGATTAAATGGCTTTGTGAGAGGTCTCTTATT

Coding sequence (CDS)

ATGTATGTGTATCTAAAACTTAAAAACCGGATTTTGACCGCTCCCTTAGTTTTTGTGATCAAACCCGCCGTCTCTGCTCTCTCCATCCTCCAACAACTCACCGGCCCGCCGGCCACCGACCCAGCAACTCCATCTCTTCTCGCCCTCCTTCTCTCTCTCGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCAATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACTTTGAATCAAGATCCAAGAGTGACATTTTGTGGGTACAGCATTCCTCATCCTTCAGACAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCAAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATATCAAACTGCCTGTTGGAGACGTTAATATCAAATAG

Protein sequence

MYVYLKLKNRILTAPLVFVIKPAVSALSILQQLTGPPATDPATPSLLALLLSLAMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLPVGDVNIK

Homology

[Close]

BLAST of CaUC03G051040 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 208.8 bits (530), Expect = 3.5e-50
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL--PVGDVNIK 157
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL  PVGD+NIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTKPVGDINIK 104

[Close]

BLAST of CaUC03G051040 vs. NCBI nr
Match: KAE8652742.1 (hypothetical protein Csa_014245 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 54  AMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 113
           AMEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT
Sbjct: 96  AMEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 155

Query: 114 GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL--PVGDVNIK 157
           GDPAREVLKDACQNLMVVCQHVRNTFDKAVLD+KL  PV D+NIK
Sbjct: 156 GDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 200

[Close]

BLAST of CaUC03G051040 vs. NCBI nr
Match: XP_004147276.2 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_011653666.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL--PVGDVNIK 157
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD+KL  PV D+NIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]

BLAST of CaUC03G051040 vs. NCBI nr
Match: XP_023522054.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo] >XP_023524948.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 96/104 (92.31%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDETKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL--PVGDVNIK 157
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KL  PVGD+NIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of CaUC03G051040 vs. NCBI nr
Match: KAG7036964.1 (DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 50  LLSLAMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR 109
           L   AMEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIR
Sbjct: 49  LFVTAMEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIR 108

Query: 110 VQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL--PVGDVNIK 157
           VQTTGDPAREVLKDACQNLM VCQHVRNT DKAVLD KL  PVGD+NIK
Sbjct: 109 VQTTGDPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 157

[Close]

BLAST of CaUC03G051040 vs. ExPASy Swiss-Prot
Match: Q5XK67 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 52  SLAMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQ 111
           +L M      +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+Q
Sbjct: 10  TLEMVQAQGNEESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQ 69

Query: 112 T-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           T  G PA E  +     L+ VCQHV NTF+ ++ + K
Sbjct: 70  TRNGIPAVEPFRRGLNELVDVCQHVLNTFETSIKEYK 106

[Close]

BLAST of CaUC03G051040 vs. ExPASy Swiss-Prot
Match: P0DPB6 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 52  SLAMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQ 111
           +L M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+Q
Sbjct: 26  ALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQ 85

Query: 112 TTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           T G  PA E  +     LM VCQHV + F+ ++ D K
Sbjct: 86  TRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122

[Close]

BLAST of CaUC03G051040 vs. ExPASy Swiss-Prot
Match: Q1RMG8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=POLR1D PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-16
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 52  SLAMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQ 111
           +L M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+Q
Sbjct: 26  ALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQ 85

Query: 112 TTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           T G  PA E  +    +LM VCQHV + F+ ++ + K
Sbjct: 86  TRGALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122

[Close]

BLAST of CaUC03G051040 vs. ExPASy Swiss-Prot
Match: Q6DRI4 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-16
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 52  SLAMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQ 111
           +L M      DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+Q
Sbjct: 9   ALEMVRTDGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQ 68

Query: 112 T-TGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           T  G PA E L++   NL  VC+HV  TF+  + + K
Sbjct: 69  TRDGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEFK 105

[Close]

BLAST of CaUC03G051040 vs. ExPASy Swiss-Prot
Match: P97304 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN=Polr1d PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-16
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 52  SLAMEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQ 111
           +L M   + TD    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+Q
Sbjct: 26  ALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQ 85

Query: 112 TTGD-PAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           T G  PA E  +     L+ VCQHV   F+ ++ D K
Sbjct: 86  TRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYK 122

[Close]

BLAST of CaUC03G051040 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL--PVGDVNIK 157
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD+KL  PV D+NIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]

BLAST of CaUC03G051040 vs. ExPASy TrEMBL
Match: A0A0A0LV21 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 6.0e-48
Identity = 98/108 (90.74%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL------PVGDVNIK 157
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  L      PVGD+NIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]

BLAST of CaUC03G051040 vs. ExPASy TrEMBL
Match: A0A1S3C5G1 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=LOC103497108 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.8e-48
Identity = 97/108 (89.81%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL------PVGDVNIK 157
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  L      P GD+NI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of CaUC03G051040 vs. ExPASy TrEMBL
Match: A0A5D3BBZ7 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001620 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.8e-48
Identity = 97/108 (89.81%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL------PVGDVNIK 157
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  L      P GD+NI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of CaUC03G051040 vs. ExPASy TrEMBL
Match: A0A6J1KDK3 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661 GN=LOC111493371 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFTDE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKL--PVGDVNIK 157
           DPAREVLKDACQNLM VCQHVRNT DKAVLD KL  PVGD+NIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of CaUC03G051040 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-32
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1   MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           DPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 61  DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of CaUC03G051040 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-32
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 55  MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 114
           MEHGSFT+ + ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1   MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 115 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           DPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 61  DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of CaUC03G051040 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 88.2 bits (217), Expect = 6.4e-18
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 89  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDIK 148
           PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

[Close]

BLAST of CaUC03G051040 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 27/90 (30.00%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 59  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 118
           S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT 
Sbjct: 20  SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTS 79

Query: 119 DPA-REVLKDACQNLMVVCQHVRNTFDKAV 144
             +  +    A  +L     +++N F+  V
Sbjct: 80  QSSPMQAYNQAINDLDKELDYLKNQFEAEV 109

[Close]

BLAST of CaUC03G051040 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-05
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 59  SFTDETK----STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 118
           S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     
Sbjct: 20  SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR----- 79

Query: 119 DPAREVLKDACQNLMVV 132
           DP     KD  +NL VV
Sbjct: 80  DP-----KDWFRNLKVV 86

The following BLAST results are available for this feature:

BLAST of CaUC03G051040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893936.1	3.5e-50	97.12	DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]	[more]
KAE8652742.1	1.1e-48	93.33	hypothetical protein Csa_014245 [Cucumis sativus]	[more]
XP_004147276.2	3.2e-48	93.27	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >XP_01165...	[more]
XP_023522054.1	1.2e-47	92.31	DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp....	[more]
KAG7036964.1	1.2e-47	88.99	DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyros...	[more]

BLAST of CaUC03G051040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XK67	1.4e-17	44.33	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G...	[more]
P0DPB6	5.3e-17	43.30	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=...	[more]
Q1RMG8	2.0e-16	42.27	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus OX=9913 GN=PO...	[more]
Q6DRI4	2.6e-16	44.33	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=p...	[more]
P97304	3.4e-16	42.27	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN...	[more]

BLAST of CaUC03G051040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUT5	1.6e-48	93.27	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010...	[more]
A0A0A0LV21	6.0e-48	90.74	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910...	[more]
A0A1S3C5G1	7.8e-48	89.81	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3BBZ7	7.8e-48	89.81	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa...	[more]
A0A6J1KDK3	1.7e-47	91.35	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661...	[more]

BLAST of CaUC03G051040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29540.1	3.5e-32	66.67	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	3.5e-32	66.67	RNApolymerase 14 kDa subunit	[more]
AT2G29540.3	6.4e-18	69.49	RNApolymerase 14 kDa subunit	[more]
AT3G52090.1	1.0e-07	30.00	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.6e-05	36.36	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 52..148 e-value: 4.1E-34 score: 118.6
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 62..143
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 66..137 e-value: 4.4E-29 score: 100.1
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 55..147
None	No IPR available	PANTHER	PTHR13946:SF37	SUBFAMILY NOT NAMED	coord: 55..147
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 70..101
IPR033898	DNA-directed RNA polymerases I and III subunit AC19	CDD	cd07029	RNAP_I_III_AC19	coord: 56..139 e-value: 1.69938E-44 score: 139.289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G051040.1	CaUC03G051040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity