CaUC03G050940 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G050940
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	serine/arginine-rich splicing factor SR45a-like
Location	Ciama_Chr03: 1079803 .. 1083377 (+)
RNA-Seq Expression	CaUC03G050940
Synteny	CaUC03G050940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTACTGTGATTTGGCGTCCGATGCTCTAGAAACTTCTCTCGCCTCGAGGATATATATAACGGTTTTGGCTTTCGTACGCAAATTCTCTTTCTAACGCGTCTTACATCTATTATGCGAGCCTGAGACCGATCGATGCAGTGAATCTCCGTTCTGTAGGCCGCCGTGATTGAGTGAGAATTGAGAAGAACGCTCGGGTTACCTTTAGCTTTGATTTGAGTTTTGCATTCGCTGATTTGTACAGTAAGTTCTCTCTCTGTCTTTCAATTGTTGGGTTTTTCATGTATTTTTGTTGTCTGAGATGAAATGTTCGGGTTCTGATCTTCATTTCCGGAAGAATTAGGTTTGGGTTATTTCTTCGATTGTTGTTTCTGTTATTAGCATGTGCATGTGACGCGAGTGGAGTATTTTCTGTAATTTTCTTGGAAATTGTAGGTGAAATTTGAAATTTGCATGTCTTTTCGTGTCTGAGATGATATGTTCAGGGTTCTGATCGACATGCGCGATTGATTCTGCTCTATATGATGTTTATGGCAAGAATTATGTTCTGCTTATTAAGCCGATTGTTTTTACTCTATGATTAGCATAATAACGGGATGCAAATGGAGGATTTCTTTATTATTTTCTTGGAAATGTTCTTGTTAAATTAGGATCTGACTGGAGAAGATGATATTAACGATATTTTTTTTTCATTGGAAGTCATGGATCTTATATTATTTTTAGGTTAAATTGCAAATTTGGTCCAGTTGGTGGAAAGTTAGAATTTAGTCTTTATAAATAGAATTTAGGTAAATTTAGTCCCTATGTTCGGTAGAACCCTTTTATGAAATTTTATGCTTTGAAATTTTTATGAAGCATGAGGACGATTTTTATCTGGTTTTATGCGATCAAAAGGACCAAATTCTAACTTTTCTCGACACCAAATTTGCAATTTATCAAAACCTTGATAAATACTCAATTGATAGTTGCTTGAGTTGTTCTGTTCAAGACGATATTCATACCTAATAATACTGTTATCATTTTGGCTTTTGTTGAGTCTTGTGCTTTTCTGTTGTAAACTCCCGTTGAATTTAGTTTTTTCTTGTCTGGTCTGGTTGCAGATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCGTCATACAAACGATCAGTCTCAAGGTCCCTGTCGAGGTCAAGGAGCCGTTCGAGGTAACTTCTTGCTGAGGAAGCATGTGCTTGTTTGGTTTTCCCACTTCTCTAAATCATACGTACGTATGCCTTTATTCTTATTTTGCGGATTCTCAATTCGTTTTTCAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTACGTTCCTGTTCTCTTATTTTCTTTAAACTTCTTATTTTCTTGGCTTGTATTCTTAGTGGCCGTGTTTGTATTTTGTCTTCTGTGTTGGTGATTTAAATTATGCACTATTTTCAATTCATGTATGAATTTTTCTATATTTCAGGTGCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAGTTTCACCAAGTATTTTTTCAAAGACTTGGGTTGTTTCCCATTATTACTCATCTTGTTCGTTAACCTCAAATATTTACGGGATCTCTGGATGGTTTGTTGTTAGAGATTTGAGTATTTTTGCTTCTTTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAGCAGCTCTTCATCAAACTCAAACTACAACTTAACAAACAAAACAAACACATGAAGTCTCAGAACATTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGGATTATATGTTATTAAGTATTTTAGCTTTTTTCTTTTTCCTTCTAATTTTGACTCTAGACACCATCACTTGCACCCCTGCTGGTACTTCTCTTAGATGGACGATTGTGAGTTGTTGTCTCATTTTTCTATCTTTAATTGTTTGATAGGCTCGAAGACGGAGAGGTAGAACTCCAACTCCTGGGAGATATCTTGGACTTAGAACAGTTCATGGTGAGGTTTTAATCTTATGTTTGGCTTATTGCTGTGAAGTATCTTGATATCTCTGTCTAATCTTCATCATTCTAACAGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTCTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCATCGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTGCAGGCATTATAAGTCATATTCTCGATCCCGCTCACTGTATCATAGGTGTAGTCGTGATAGGTCATACTCACCTTATGACAGTTATTCCCCTGATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGGATTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCGTTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCAAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTCGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGATTCACTGATCTACATCCCTTGCTACATTCTCATGGCCATGAATGTTTGGAATTTTTAATGGGAACCAATCAGCTGCAGTTCAGTCAGTCTTTTGTGAATAACGATGTAAAAACCAAGCCCCTGGACGGGGGATGCCTTTGTGTTTGAGAATGGTGCTTGTGGAATAATTCATTCACTGTGAGGGGAAACGGCCGGGGATATTTGCTCTAAACTCATCTTGAAGCAGCTGTTAAGTTTCCAATTTAGTTGTGAAAAGTTCGGTTTAATTTGTAATTTTGATTCAAACTCACTCTTGGGTTGGATGTTGTGATTGTGACTATCTTATATGAACCTTAAAGATTCCGAACATCTGAGGTCTGGTCTAGCTCATTTGGAATTTCGTTTTTCTTTAAGTTGTCCTGACATTAACTTTAAGGGATTATTTGAAAGATTGAGCTTAGCTTGTAACCATAATTCATCCAACATTCTGGGCGGTACCAATCTTCTGCCTGATTTGTTTTCCGTTAGTATTGCAAGTTCAAACTCAAAGTGATCGTCATATGGTTTGAAGAGATATCTAGAATATTTATTTTATAAGTAACTTCATATAATTTTAATTTACCTATATGGATCTATCCCTAAATTGAATTTTGCCTACAT

mRNA sequence

ATTGTACTGTGATTTGGCGTCCGATGCTCTAGAAACTTCTCTCGCCTCGAGGATATATATAACGGTTTTGGCTTTCGTACGCAAATTCTCTTTCTAACGCGTCTTACATCTATTATGCGAGCCTGAGACCGATCGATGCAGTGAATCTCCGTTCTGTAGGCCGCCGTGATTGAGTGAGAATTGAGAAGAACGCTCGGGTTACCTTTAGCTTTGATTTGAGTTTTGCATTCGCTGATTTGTACAATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCGTCATACAAACGATCAGTCTCAAGGTCCCTGTCGAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGAAGACGGAGAGGTAGAACTCCAACTCCTGGGAGATATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTCTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCATCGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTGCAGGCATTATAAGTCATATTCTCGATCCCGCTCACTGTATCATAGGTGTAGTCGTGATAGGTCATACTCACCTTATGACAGTTATTCCCCTGATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGGATTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCGTTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCAAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTCGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGATTCACTGATCTACATCCCTTGCTACATTCTCATGGCCATGAATGTTTGGAATTTTTAATGGGAACCAATCAGCTGCAGTTCAGTCAGTCTTTTGTGAATAACGATGTAAAAACCAAGCCCCTGGACGGGGGATGCCTTTGTGTTTGAGAATGGTGCTTGTGGAATAATTCATTCACTGTGAGGGGAAACGGCCGGGGATATTTGCTCTAAACTCATCTTGAAGCAGCTGTTAAGTTTCCAATTTAGTTGTGAAAAGTTCGGTTTAATTTGTAATTTTGATTCAAACTCACTCTTGGGTTGGATGTTGTGATTGTGACTATCTTATATGAACCTTAAAGATTCCGAACATCTGAGGTCTGGTCTAGCTCATTTGGAATTTCGTTTTTCTTTAAGTTGTCCTGACATTAACTTTAAGGGATTATTTGAAAGATTGAGCTTAGCTTGTAACCATAATTCATCCAACATTCTGGGCGGTACCAATCTTCTGCCTGATTTGTTTTCCGTTAGTATTGCAAGTTCAAACTCAAAGTGATCGTCATATGGTTTGAAGAGATATCTAGAATATTTATTTTATAAGTAACTTCATATAATTTTAATTTACCTATATGGATCTATCCCTAAATTGAATTTTGCCTACAT

Coding sequence (CDS)

ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCGTCATACAAACGATCAGTCTCAAGGTCCCTGTCGAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTCGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCGTTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGCTCGAAGACGGAGAGGTAGAACTCCAACTCCTGGGAGATATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTCTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCATCGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCAGACTGCAGGCATTATAAGTCATATTCTCGATCCCGCTCACTGTATCATAGGTGTAGTCGTGATAGGTCATACTCACCTTATGACAGTTATTCCCCTGATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGGATTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCGTTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCAAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTCGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

Protein sequence

MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSIDRRRRSYGSPYQYRSYSYSRRRYDSPDCRHYKSYSRSRSLYHRCSRDRSYSPYDSYSPDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESRRSYSRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSRSVSSRSVSAA

Homology

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BLAST of CaUC03G050940 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 562.4 bits (1448), Expect = 2.8e-156
Identity = 324/359 (90.25%), Postives = 332/359 (92.48%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MS SRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSCSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DPLTRESRGFGFITMSS DEA+NCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPLTRESRGFGFITMSSNDEADNCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRST YSS+RSRSRSHS+D
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTDYSSNRSRSRSHSVD 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSPDCRHYKSYSRSRSLYHRCSRDRSYSPYDSYSPDPY 240
           R RRSYGS Y YRSYSYSRRRYDSPDCR +KSYSRSRS Y R  RDRSYSPYD YSPDPY
Sbjct: 181 RHRRSYGSSYNYRSYSYSRRRYDSPDCRRHKSYSRSRSPYRRRHRDRSYSPYDDYSPDPY 240

Query: 241 YRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESRRSYSRSISPK 300
           YRRH YRSVSRSLSP+ARIS RHYSRSYSP PRRRTLRR YSRS S ESRRSYSRSISP+
Sbjct: 241 YRRHRYRSVSRSLSPKARISSRHYSRSYSPEPRRRTLRRSYSRSLSWESRRSYSRSISPE 300

Query: 301 RSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSYKRGYS-GRSRSRSRSVSSRSVSAA 359
           RSRRSWSSYSYSVSPERSRSSRSRS SNT R+HSYK   S  RSRSRSRSV+SRSVS A
Sbjct: 301 RSRRSWSSYSYSVSPERSRSSRSRSRSNTSRRHSYKLYESRRRSRSRSRSVTSRSVSPA 359

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BLAST of CaUC03G050940 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 525.8 bits (1353), Expect = 2.9e-145
Identity = 315/371 (84.91%), Postives = 330/371 (88.95%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRS SI+
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSP----------DCRHYKSYSRSRSLYHRCSRDRSYS 240
           R RRSYGSPY  RSYSYSRRRYDSP            RH++SYSRS S Y R SRDRSYS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDRSYS 240

Query: 241 PYDSYSPDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESR 300
           PYD YSPDPYYRRH YRSVSRSLSP++R + RHYSRSYSP PRRRTLR  YS SPS ESR
Sbjct: 241 PYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRN-YSHSPSRESR 300

Query: 301 RSYSRSISPKRSRRSWSS-YSYSVSPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRS 359
           RSYSRSISP+RSRRS SS YS S+SPER RS RSRS S+TPR+H  + KRGYS RSRSRS
Sbjct: 301 RSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRSRS 360

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BLAST of CaUC03G050940 vs. NCBI nr
Match: XP_004145262.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothetical protein Csa_023227 [Cucumis sativus])

HSP 1 Score: 514.6 bits (1324), Expect = 6.8e-142
Identity = 311/370 (84.05%), Postives = 324/370 (87.57%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRSSSRSTH SSDRSRSRS SID
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSPD----------CRHYKSYSRSRSLYHRCSRDRSYS 240
           + RR+YGSPY  RSYSYSRRRYDSPD           RH+KSYSRSRS Y R SRDRSYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PYDSYSPDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESR 300
           P D YSPDPYYRRH YRSVSRSLSP++R S RHYSRSYSP PRRRTLR  Y RSPS E  
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNS-RHYSRSYSPEPRRRTLRNHY-RSPSQE-L 300

Query: 301 RSYSRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRSR 359
            SYSRSISP+RSR   S YS S+SPER RSSRSRS S+TPR+H  + KRGYS RSRSRS+
Sbjct: 301 SSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQ 360

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BLAST of CaUC03G050940 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442.6 bits (1137), Expect = 3.3e-120
Identity = 283/365 (77.53%), Postives = 302/365 (82.74%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 33  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 92

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 93  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 152

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRY GLRTV VRRRSRSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS +
Sbjct: 153 RRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 212

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDCRHYKSYSRSRSLYHRCSR------DRSYSPYD 240
           RRRRS  SPY YRSYS YS RRYDSP  R ++SYSRS S    CSR      DRSYSPYD
Sbjct: 213 RRRRSNDSPYHYRSYSPYSGRRYDSPYYRRHRSYSRSHS---PCSRLPTRRHDRSYSPYD 272

Query: 241 SYSPDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESRRSY 300
             SPDPYYRRH  RSVSRS+SP+AR+S R YSRSYSP   RR+  R YSRS      RSY
Sbjct: 273 YCSPDPYYRRHRDRSVSRSVSPKARVSSRRYSRSYSP-RHRRSASRSYSRS------RSY 332

Query: 301 SRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSRSVSSR 359
           SRS+SP+RSRR + S+S+S+SPER RSSRSRS S+TPR H  + GYSG     S SV+SR
Sbjct: 333 SRSLSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASR 380

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BLAST of CaUC03G050940 vs. NCBI nr
Match: XP_022150940.1 (serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia])

HSP 1 Score: 438.7 bits (1127), Expect = 4.7e-119
Identity = 294/382 (76.96%), Postives = 312/382 (81.68%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEK
Sbjct: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADP TRESRGFGFITMSS +EAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKARR 121

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPYRRSSSRS+ YSS+RSRSRSHS  
Sbjct: 122 RRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSHSPY 181

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDCRHYKSYSR--SRSLYHRC---SRDRSYSP-YD 240
           R RRSYGSPY +RSYS YSRRRYDSP  R ++SYSR  SRS Y R      DRSYS  YD
Sbjct: 182 RHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSSYYD 241

Query: 241 SYSPDP-YYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLR---------RIYSR 300
            YS D  YYRRH YRSVSRS+SP+ARIS R YSRSYSP P RRTLR         RIYSR
Sbjct: 242 YYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRIYSR 301

Query: 301 SPSLESRRSYSRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSY-------K 359
           SPSLE  RSYSRS+SP+RS+RS  SY    S  RSR SRSRS S+T R+HS+       K
Sbjct: 302 SPSLE-LRSYSRSVSPERSKRS-GSYLEGRS-SRSR-SRSRSRSHTFRRHSHKVYENSGK 361

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BLAST of CaUC03G050940 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.0e-57
Identity = 196/369 (53.12%), Postives = 219/369 (59.35%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSH 180
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S      S SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSDRGRSYSP 210

Query: 181 SIDRRRRSYG-SPYQYRSYSYSRRRYDSPDCRHYKSYSRSRS-LYHRCSRDRSYS-PYDS 240
           S  RR RS   SP+  R   YS  R  SPD R+ +   RS S  Y R  R RSYS    +
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCRA 270

Query: 241 YSPDPYYRRHSYRSVSRSLSPEARISHRHYS-------RSYSPGPRRRTLRRIYSRSPSL 300
               PYY R  YRS SRS SP  R   R  S       RSYSP  + R       RS S 
Sbjct: 271 RDRSPYYMRR-YRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGR------DRSYSP 330

Query: 301 ESR-----RSYSRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSYKRGYSGR 352
           ESR     RS S S+SP        S S S+SP + R           RQ S     S R
Sbjct: 331 ESRYYRRHRSVSGSVSP-----GGRSMSRSISPRKGRKESRSKSRRHDRQSSMCHSRSAR 381

[Close]

BLAST of CaUC03G050940 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.9e-15
Identity = 73/221 (33.03%), Postives = 117/221 (52.94%), Query Frame = 0


Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLT 79
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARRRRGRTPTPGRYLGLRTVHV 139
           + SRGFGF++ S+++EA + I  LN     GR++ V+KA+R R  +PTPG+Y+G      
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDR--- 198

Query: 140 RRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSIDRRRRSYGSPYQYRSYSY-- 199
           RR SR + S        YRR++ R      D +R R+     R +   SP  YR   Y  
Sbjct: 199 RRNSRDFPSNNKD--GGYRRNNYR----DRDSNRYRNSYRPSRPQREHSPGNYRKERYNV 258

Query: 200 -SRRRYDSPDCRHYKSYSRSRSLYHRCSRDRSYSPYDSYSP 238
            SR R +    RH+   S + + +H     R+ +P +   P
Sbjct: 259 DSRPRRE----RHFHGRSFAHAEHHSVPNMRNDTPGNEALP 286

[Close]

BLAST of CaUC03G050940 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 69.3 bits (168), Expect = 9.9e-11
Identity = 79/204 (38.73%), Postives = 101/204 (49.51%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  IDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHVRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSIDRRRRSYGSPYQYRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+S S  R +    S  + RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSP---DCRHYKSYSRSRS 219
           SR R  SP     R  KS SRS+S
Sbjct: 186 SRSRSRSPPPVSKRESKSRSRSKS 208

[Close]

BLAST of CaUC03G050940 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 69.3 bits (168), Expect = 9.9e-11
Identity = 79/204 (38.73%), Postives = 101/204 (49.51%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  IDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHVRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSIDRRRRSYGSPYQYRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+S S  R +    S  + RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSP---DCRHYKSYSRSRS 219
           SR R  SP     R  KS SRS+S
Sbjct: 186 SRSRSRSPPPVSKRESKSRSRSKS 208

[Close]

BLAST of CaUC03G050940 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 69.3 bits (168), Expect = 9.9e-11
Identity = 79/204 (38.73%), Postives = 101/204 (49.51%), Query Frame = 0


Query: 33  PSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSS 92
           P  DVE    +L V  L+ R +   L + F   G V DV++  D  T+ESRGF F+    
Sbjct: 6   PPPDVEGM-TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 65

Query: 93  IDEAENCIKYLNRSVLEGRIITVEKARRRR-------GRTPTPGRY----LGLRTVHVRR 152
             +AE+ +  ++ +VL+GR + V+ AR  R        R P P RY     G R+   RR
Sbjct: 66  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 125

Query: 153 ----RSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSIDRRRRSYGSPYQYRSYSY 212
               RSRS S  RS S S Y RS SRS   S  RS S+S S  R +    S  + RS S 
Sbjct: 126 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 185

Query: 213 SRRRYDSP---DCRHYKSYSRSRS 219
           SR R  SP     R  KS SRS+S
Sbjct: 186 SRSRSRSPPPVSKRESKSRSRSKS 208

[Close]

BLAST of CaUC03G050940 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 1.4e-145
Identity = 315/371 (84.91%), Postives = 330/371 (88.95%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRS SI+
Sbjct: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSRSIN 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSP----------DCRHYKSYSRSRSLYHRCSRDRSYS 240
           R RRSYGSPY  RSYSYSRRRYDSP            RH++SYSRS S Y R SRDRSYS
Sbjct: 181 RHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDRSYS 240

Query: 241 PYDSYSPDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESR 300
           PYD YSPDPYYRRH YRSVSRSLSP++R + RHYSRSYSP PRRRTLR  YS SPS ESR
Sbjct: 241 PYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRN-YSHSPSRESR 300

Query: 301 RSYSRSISPKRSRRSWSS-YSYSVSPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRS 359
           RSYSRSISP+RSRRS SS YS S+SPER RS RSRS S+TPR+H  + KRGYS RSRSRS
Sbjct: 301 RSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRSRS 360

[Close]

BLAST of CaUC03G050940 vs. ExPASy TrEMBL
Match: A0A0A0LXJ6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 3.3e-142
Identity = 311/370 (84.05%), Postives = 324/370 (87.57%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRSSSRSTH SSDRSRSRS SID
Sbjct: 121 RRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSRSID 180

Query: 181 RRRRSYGSPYQYRSYSYSRRRYDSPD----------CRHYKSYSRSRSLYHRCSRDRSYS 240
           + RR+YGSPY  RSYSYSRRRYDSPD           RH+KSYSRSRS Y R SRDRSYS
Sbjct: 181 QHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDRSYS 240

Query: 241 PYDSYSPDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESR 300
           P D YSPDPYYRRH YRSVSRSLSP++R S RHYSRSYSP PRRRTLR  Y RSPS E  
Sbjct: 241 PCDHYSPDPYYRRHRYRSVSRSLSPKSRNS-RHYSRSYSPEPRRRTLRNHY-RSPSQE-L 300

Query: 301 RSYSRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSRSR 359
            SYSRSISP+RSR   S YS S+SPER RSSRSRS S+TPR+H  + KRGYS RSRSRS+
Sbjct: 301 SSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSRSQ 360

[Close]

BLAST of CaUC03G050940 vs. ExPASy TrEMBL
Match: A0A6J1D9V3 (serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018970 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 2.3e-119
Identity = 294/382 (76.96%), Postives = 312/382 (81.68%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSR+SRYSRSPSY+RS+SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+TRRELEK
Sbjct: 2   MSYSRKSRYSRSPSYERSLSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRMTRRELEK 61

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLVADP TRESRGFGFITMSS +EAE CIKYLNRSVLEGRIITVEKARR
Sbjct: 62  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKARR 121

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRYLGLRTV VRRRS SYS R SPSYSPYRRSSSRS+ YSS+RSRSRSHS  
Sbjct: 122 RRGRTPTPGRYLGLRTVRVRRRSHSYSPRHSPSYSPYRRSSSRSSRYSSERSRSRSHSPY 181

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDCRHYKSYSR--SRSLYHRC---SRDRSYSP-YD 240
           R RRSYGSPY +RSYS YSRRRYDSP  R ++SYSR  SRS Y R      DRSYS  YD
Sbjct: 182 RHRRSYGSPYHHRSYSPYSRRRYDSPYYRCHRSYSRSGSRSPYCRSPTRRHDRSYSSYYD 241

Query: 241 SYSPDP-YYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLR---------RIYSR 300
            YS D  YYRRH YRSVSRS+SP+ARIS R YSRSYSP P RRTLR         RIYSR
Sbjct: 242 YYSRDDCYYRRHRYRSVSRSVSPKARISGRGYSRSYSPRP-RRTLRSYSRSPSSVRIYSR 301

Query: 301 SPSLESRRSYSRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSY-------K 359
           SPSLE  RSYSRS+SP+RS+RS  SY    S  RSR SRSRS S+T R+HS+       K
Sbjct: 302 SPSLE-LRSYSRSVSPERSKRS-GSYLEGRS-SRSR-SRSRSRSHTFRRHSHKVYENSGK 361

[Close]

BLAST of CaUC03G050940 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 5.6e-118
Identity = 279/362 (77.07%), Postives = 300/362 (82.87%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS +
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDCRHYKSYSRSRSLYHRC---SRDRSYSPYDSYS 240
           RRRRS  SPY+YRSYS YSRRRYDSP  R ++SYSRS S   R     RDRSYSPYD  S
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSPYDYCS 240

Query: 241 PDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESRRSYSRS 300
           PD YYRRH  RSVSRS+SP+AR+S R YS SYSP   RR+  R +SRS      RSYSRS
Sbjct: 241 PDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSP-RHRRSASRSHSRS------RSYSRS 300

Query: 301 ISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSRSVSSRSVS 359
           +SP+RSRR + S+S+S+SPER RSSRSRS S+TPR H  + GYSG     S SV+SRSVS
Sbjct: 301 LSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASRSVS 348

[Close]

BLAST of CaUC03G050940 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 9.6e-118
Identity = 280/365 (76.71%), Postives = 301/365 (82.47%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 120
           HFSAEGTVLDVHLV DP TRESRGFGFITMSS DEAE CIKYLNRSVLEGR+ITVEKARR
Sbjct: 61  HFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKARR 120

Query: 121 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSHSID 180
           RRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSHS +
Sbjct: 121 RRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSHSPN 180

Query: 181 RRRRSYGSPYQYRSYS-YSRRRYDSPDCRHYKSYSRSRSLYHRCSR------DRSYSPYD 240
           RRRRS  SPY+YRSYS YSRRRYDSP  R ++SYSRS S    CSR      DRSYSPYD
Sbjct: 181 RRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHS---PCSRLPTRRHDRSYSPYD 240

Query: 241 SYSPDPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRRIYSRSPSLESRRSY 300
             SPD YYRRH  RSVSRS+SP+AR+S R YS SYSP   RR+  R +SRS      RSY
Sbjct: 241 YCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSP-RHRRSASRSHSRS------RSY 300

Query: 301 SRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSRSVSSR 359
           SRS+SP+RSRR + S+S+S+SPER RSSRSRS S+TPR H  + GYSG     S SV+SR
Sbjct: 301 SRSLSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASR 348

[Close]

BLAST of CaUC03G050940 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 222.6 bits (566), Expect = 5.0e-58
Identity = 196/369 (53.12%), Postives = 219/369 (59.35%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

Query: 121 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSH 180
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S      S SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSC-----SRSRSRSYSSDRGRSYSP 210

Query: 181 SIDRRRRSYG-SPYQYRSYSYSRRRYDSPDCRHYKSYSRSRS-LYHRCSRDRSYS-PYDS 240
           S  RR RS   SP+  R   YS  R  SPD R+ +   RS S  Y R  R RSYS    +
Sbjct: 211 SYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYSPYYRRRDRSRSYSRNCRA 270

Query: 241 YSPDPYYRRHSYRSVSRSLSPEARISHRHYS-------RSYSPGPRRRTLRRIYSRSPSL 300
               PYY R  YRS SRS SP  R   R  S       RSYSP  + R       RS S 
Sbjct: 271 RDRSPYYMRR-YRSRSRSYSPRYRARDRSCSPYYRGRDRSYSPHYQGR------DRSYSP 330

Query: 301 ESR-----RSYSRSISPKRSRRSWSSYSYSVSPERSRSSRSRSPSNTPRQHSYKRGYSGR 352
           ESR     RS S S+SP        S S S+SP + R           RQ S     S R
Sbjct: 331 ESRYYRRHRSVSGSVSP-----GGRSMSRSISPRKGRKESRSKSRRHDRQSSMCHSRSAR 381

[Close]

BLAST of CaUC03G050940 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.1 bits (370), Expect = 2.7e-35
Identity = 110/215 (51.16%), Postives = 130/215 (60.47%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKH 61
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 62  FSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARRR 121
           F+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE++RR+
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRRK 150

Query: 122 RGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYR-RSSSRSTHYSSDRSRSRSHSID 181
           R RTPTPG YLGL++     R    S  R      YR R S R  +   D  RS      
Sbjct: 151 RPRTPTPGHYLGLKSSRDSDREGRSSRGRHYDRDDYRDRRSPRRDYSPRDERRS------ 210

Query: 182 RRRRSYGSPYQYRSYSYSRRRYDSPDCRHYKSYSR 216
           RR RSY SP+       S RR +  + R+    SR
Sbjct: 211 RRDRSY-SPHGRSPERRSERRSERSERRYEPRGSR 238

[Close]

BLAST of CaUC03G050940 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-34
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

[Close]

BLAST of CaUC03G050940 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.5 bits (358), Expect = 6.5e-34
Identity = 110/216 (50.93%), Postives = 130/216 (60.19%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKARR 121
           HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE++RR
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERSRR 150

Query: 122 RRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYR-RSSSRSTHYSSDRSRSRSHSI 181
           +R RTPTPG YLGL++     R    S  R      YR R S R  +   D  RS     
Sbjct: 151 KRPRTPTPGHYLGLKSSRDSDREGRSSRGRHYDRDDYRDRRSPRRDYSPRDERRS----- 210

Query: 182 DRRRRSYGSPYQYRSYSYSRRRYDSPDCRHYKSYSR 216
            RR RSY SP+       S RR +  + R+    SR
Sbjct: 211 -RRDRSY-SPHGRSPERRSERRSERSERRYEPRGSR 239

[Close]

BLAST of CaUC03G050940 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-28
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

The following BLAST results are available for this feature:

BLAST of CaUC03G050940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894517.1	2.8e-156	90.25	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]
XP_008457405.1	2.9e-145	84.91	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
XP_004145262.1	6.8e-142	84.05	serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothe...	[more]
KAG6607292.1	3.3e-120	77.53	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]
XP_022150940.1	4.7e-119	76.96	serine/arginine-rich splicing factor SR45a-like isoform X1 [Momordica charantia]	[more]

BLAST of CaUC03G050940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	7.0e-57	53.12	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	3.9e-15	33.03	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q3MHR5	9.9e-11	38.73	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	9.9e-11	38.73	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	9.9e-11	38.73	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of CaUC03G050940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C508	1.4e-145	84.91	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LXJ6	3.3e-142	84.05	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV...	[more]
A0A6J1D9V3	2.3e-119	76.96	serine/arginine-rich splicing factor SR45a-like isoform X1 OS=Momordica charanti...	[more]
A0A6J1GBJ2	5.6e-118	77.07	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]
A0A6J1GAS3	9.6e-118	76.71	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]

BLAST of CaUC03G050940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	5.0e-58	53.12	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	2.7e-35	51.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.2	2.9e-34	67.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	6.5e-34	50.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	1.8e-28	62.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 e-value: 8.7E-23 score: 91.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..113 e-value: 8.0E-15 score: 54.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..120 score: 16.960629
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..126 e-value: 5.9E-27 score: 96.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..336
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 9..253
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 9..253
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G050940.1	CaUC03G050940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding