CaUC03G050600 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G050600
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	protein PSY1-like
Location	Ciama_Chr03: 682944 .. 684822 (+)
RNA-Seq Expression	CaUC03G050600
Synteny	CaUC03G050600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTGAAGAGAGGTAGAGACATATATATATATATATATATATTAATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATGCACCCGCAAATCCAATTGCAAGCAAAGAGAGTAAGAACGAAACTCTTTCTTCTTCTTCACCTTATTCATTTCTTTTCGTCAAATATGTCGTAACTGCTCTACTTAAATTTGTACGTTTTAACAGTTTAGCATTGTATAAGGGAGATCGATATCGGTCTCTTGAAGTCATATTTTTCTTATTTTATATAAAAATAGTCTAATTTGTCAAAATTTTGTAGCTGATCGAAGGAGAGAGTGCTGAGATAATATGCATACAAATGATCAAATATGCCTAACCTCTCAAGTCTCAACTTAAGTTTTCGTAGTTTTATCAATACTTTAATTTTAAATTTAATCCTTCAAAAATTATATTTATCGAAATTGTTACCTATTGATAATAATTTTCATACAATAAATAACTCTATACGTTCATGTGTTTACAAAATTTATAAAGGAAAATTTTACCCAGACTAAATTTTTGTTTGAAAAAATCAACAATATAACTAATAGCAAGGACTATTCCTAAGAGCATGAAGACAACAATTTAAAAATTCACAGACTAAAATAAAATGAAGTTTTTGAGTTTCTGTCATTTTTCCTTTCATTCCTTTCCTATGTTTAATTTTCAAGCTTTGTAAATGATTAAATTTATTTGGTGGGTTTATTGGTAGTTTAATAGCTAATTAGTTTTGTGATTACAAATGTTTGTAGATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGTAAGCCTAACCATACATTAATAATCCATACTAACATTCCTAATTAACAAAATCTAACACTTTGGCTAATTAAGGGCCAAATTAGTAATTTTTCTTACATCTCCTAAATAAAGAGCTTTCAATACTAGAACAAAAACATCTCTACCTAACAAAATTAAGTGAAGGTCCAAAATGGTAGCCATTTTATTTCTACCTTTCCACACATAATTGAGGAATAGAAAAAATTCTTCAAGGGTCTCAAGTTCCATGAGTGGATGATAAATATTGTCAAAATCCAATACTTTGGACCATACCCACTCTATATAAATATAAATTATTATTATATATGGTTGAATGTATGAAGATTTTTTTTTTAATAGCTTGAACACAAGTATTTTTCTATTATCATTATTACTTAGATTAGTGAACTTATCTATTTAAATATATGATCCTTCATTTTAATTTTTGTTTGATGACTAAGTTTAACTTTATATATGTTCATTATAGTAAAAGTGAAAATCACTCTTTCCCGTGTTGTTCTCAAGTTTTTTTTTTTGAAAGACCTATGTGTTTGTAGCTTGTTTCGGATACAATGAAGCATAATTATTATGTTTGTAGATATTATATAGAAATATATACATTTAGAACATACAAACATAATAATTATGCTTAGTTGTACTCTAAATAAGCTATGAGTTTAGCTTAGTGGTAACGGACATAGACTCTTCATTTGAGGCCGAAAGTTTGATCTCCTATTCTGGTAAATACCATAGAAAAAAAATACTATATATTATGCTTTTATAGGAAATACCAACTACTCAATAAACTTTGTTGTTTTCATTAATGTTTACTGATTTTTGTAGGGAATAACAAGGAGTTGGGTGGTTAATGGGAAGAGAATGGCAAGGAATTAAGGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGTGTGTTGAGATAATTAGTACAAGAATAAAAATTTTCAC

mRNA sequence

AAGGTGAAGAGAGGTAGAGACATATATATATATATATATATATTAATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATGCACCCGCAAATCCAATTGCAAGCAAAGAGAATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGGAATAACAAGGAGTTGGGTGGTTAATGGGAAGAGAATGGCAAGGAATTAAGGGCATTATGGTCAAGTGGTGGAAGCAACTATTTGTGTGTTGAGATAATTAGTACAAGAATAAAAATTTTCAC

Coding sequence (CDS)

AAGGTGAAGAGAGGTAGAGACATATATATATATATATATATATTAATGGCTTCTCCTTCTCGACTTTCCATTTACTTCTCTTTCCTCTTTCTCCTCCTTGTGGCTACCGCCATGGTAGCCTCTGCCACTCGCTATGCACCCGCAAATCCAATTGCAAGCAAAGAGAATAATGAAGGCATGATTGGCTTACAAGACTACGGTGATGCACGTGCCAATCATAGACATGATCCTCACCATCCTCTAACTGTCAAGGGGAATAACAAGGAGTTGGGTGGTTAA

Protein sequence

KVKRGRDIYIYIYILMASPSRLSIYFSFLFLLLVATAMVASATRYAPANPIASKENNEGMIGLQDYGDARANHRHDPHHPLTVKGNNKELGG

Homology

[Close]

BLAST of CaUC03G050600 vs. NCBI nr
Match: KGN65819.1 (hypothetical protein Csa_023229 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 19 PSRLSIYFSFLFLLLVATAMVASATRYAPANPIAS-KENNEGMIGLQDYGDARANHRHDP 78
          P RLS YFSFL LLL+ATAMVASA R+APA P++S K N++ MIGLQDYGDARANHRHDP
Sbjct: 8  PPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDP 67

Query: 79 HHPLTV-KGNNKELGG 93
          HHPL+V KGNNKEL G
Sbjct: 68 HHPLSVNKGNNKELDG 83

[Close]

BLAST of CaUC03G050600 vs. NCBI nr
Match: XP_008457363.1 (PREDICTED: protein PSY1-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-21
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 17 ASPSRLSIYFSFLFLLLVATAMVASATRYAPANPIASKE-NNEGMIGLQDYGDARANHRH 76
          +S  RLS YFSFL LLL+ TAMVASA R+AP  PI+S E N+EGMIGLQDYGDARANHRH
Sbjct: 5  SSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANHRH 64

Query: 77 DPHHPLTV-KGNNKELGG 93
          DPHHPLTV KGN KEL G
Sbjct: 65 DPHHPLTVNKGNKKELDG 82

[Close]

BLAST of CaUC03G050600 vs. NCBI nr
Match: KAG6607316.1 (hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 20 SRLSIYFSFLFLLLVATAMVA-SATRYAPANPIASKENNEGMIGLQDYGDARANHRHDPH 79
          SR S+YFS LF LL   A+VA S  R  PA+PIAS E ++ MIGL+DYGDARANHRH+PH
Sbjct: 3  SRSSLYFSLLFFLLSTAAIVAPSEARNIPASPIASTERHDEMIGLRDYGDARANHRHEPH 62

Query: 80 HPLTVKGNNKEL 91
          HPL V+G  KEL
Sbjct: 63 HPLGVEGYKKEL 74

[Close]

BLAST of CaUC03G050600 vs. NCBI nr
Match: XP_022998316.1 (uncharacterized protein LOC111492989 [Cucurbita maxima])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 20 SRLSIYFSFLFLLLVATAMVAS-ATRYAPANPIASKENNEGMIGLQDYGDARANHRHDPH 79
          S+ S+YFS LF LL   A+VA+   R  PANPI+S E ++ MIGL+DYGDARANHRH+PH
Sbjct: 3  SQSSLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDEMIGLRDYGDARANHRHEPH 62

Query: 80 HPLTVKGNNKEL 91
          HPL V+G  KEL
Sbjct: 63 HPLGVEGYKKEL 74

[Close]

BLAST of CaUC03G050600 vs. NCBI nr
Match: XP_022150920.1 (uncharacterized protein LOC111018956 [Momordica charantia])

HSP 1 Score: 80.9 bits (198), Expect = 6.4e-12
Identity = 47/101 (46.53%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 20  SRLSIYFSFLFLLLVATAMVASATRYAPANPIASKEN----------------------- 79
           SRLS+YFS L LLL   ++V+SA R+APA       N                       
Sbjct: 3   SRLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHH 62

Query: 80  -----NEGMIGLQDYGDARANHRHDPHHPLTVKGNNKELGG 93
                +E MIGL DYGD  ANH+HDPHHPL VKGNNKEL G
Sbjct: 63  RLLTGHEEMIGLHDYGDTHANHKHDPHHPLAVKGNNKELDG 103

[Close]

BLAST of CaUC03G050600 vs. ExPASy TrEMBL
Match: A0A0A0LXN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 19 PSRLSIYFSFLFLLLVATAMVASATRYAPANPIAS-KENNEGMIGLQDYGDARANHRHDP 78
          P RLS YFSFL LLL+ATAMVASA R+APA P++S K N++ MIGLQDYGDARANHRHDP
Sbjct: 8  PPRLSFYFSFLILLLLATAMVASAARHAPAIPVSSNKRNDKEMIGLQDYGDARANHRHDP 67

Query: 79 HHPLTV-KGNNKELGG 93
          HHPL+V KGNNKEL G
Sbjct: 68 HHPLSVNKGNNKELDG 83

[Close]

BLAST of CaUC03G050600 vs. ExPASy TrEMBL
Match: A0A1S3C5B4 (protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.2e-21
Identity = 60/78 (76.92%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 17 ASPSRLSIYFSFLFLLLVATAMVASATRYAPANPIASKE-NNEGMIGLQDYGDARANHRH 76
          +S  RLS YFSFL LLL+ TAMVASA R+AP  PI+S E N+EGMIGLQDYGDARANHRH
Sbjct: 5  SSSPRLSFYFSFLLLLLLTTAMVASAARHAPPIPISSNERNDEGMIGLQDYGDARANHRH 64

Query: 77 DPHHPLTV-KGNNKELGG 93
          DPHHPLTV KGN KEL G
Sbjct: 65 DPHHPLTVNKGNKKELDG 82

[Close]

BLAST of CaUC03G050600 vs. ExPASy TrEMBL
Match: A0A6J1K9X5 (uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.4e-14
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 20 SRLSIYFSFLFLLLVATAMVAS-ATRYAPANPIASKENNEGMIGLQDYGDARANHRHDPH 79
          S+ S+YFS LF LL   A+VA+   R  PANPI+S E ++ MIGL+DYGDARANHRH+PH
Sbjct: 3  SQSSLYFSLLFFLLSTAAIVAAFEARNIPANPISSTERHDEMIGLRDYGDARANHRHEPH 62

Query: 80 HPLTVKGNNKEL 91
          HPL V+G  KEL
Sbjct: 63 HPLGVEGYKKEL 74

[Close]

BLAST of CaUC03G050600 vs. ExPASy TrEMBL
Match: A0A6J1D9T4 (uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018956 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 47/101 (46.53%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 20  SRLSIYFSFLFLLLVATAMVASATRYAPANPIASKEN----------------------- 79
           SRLS+YFS L LLL   ++V+SA R+APA       N                       
Sbjct: 3   SRLSLYFSLLILLLATASIVSSAARHAPATSSKLARNGGMVEIHERFAKSRVEDNSMVHH 62

Query: 80  -----NEGMIGLQDYGDARANHRHDPHHPLTVKGNNKELGG 93
                +E MIGL DYGD  ANH+HDPHHPL VKGNNKEL G
Sbjct: 63  RLLTGHEEMIGLHDYGDTHANHKHDPHHPLAVKGNNKELDG 103

The following BLAST results are available for this feature:

BLAST of CaUC03G050600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65819.1	4.4e-21	77.63	hypothetical protein Csa_023229 [Cucumis sativus]	[more]
XP_008457363.1	4.4e-21	76.92	PREDICTED: protein PSY1-like [Cucumis melo]	[more]
KAG6607316.1	4.0e-14	65.28	hypothetical protein SDJN03_00658, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998316.1	1.5e-13	62.50	uncharacterized protein LOC111492989 [Cucurbita maxima]	[more]
XP_022150920.1	6.4e-12	46.53	uncharacterized protein LOC111018956 [Momordica charantia]	[more]

BLAST of CaUC03G050600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G050600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXN0	2.2e-21	77.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532270 PE=4 SV=1	[more]
A0A1S3C5B4	2.2e-21	76.92	protein PSY1-like OS=Cucumis melo OX=3656 GN=LOC103497069 PE=4 SV=1	[more]
A0A6J1K9X5	7.4e-14	62.50	uncharacterized protein LOC111492989 OS=Cucurbita maxima OX=3661 GN=LOC111492989...	[more]
A0A6J1D9T4	3.1e-12	46.53	uncharacterized protein LOC111018956 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of CaUC03G050600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC03G050600.1	CaUC03G050600.1	mRNA