CaUC02G047710 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGTGAATTGAATTGTGATAGAGGAAGTTATTGAGTTTGAGTTTGGGAACTTGGGAATTGGCAGGCACACCTCATTTTGACGTTTAATTAACCATAGTAAATGTGCTTTTGCGTTACAACTGGGAAAGCATCTACGCCCATTCCTTCATTCTCATCCCACACTTTCACTTCCGTCAGGTCTGGGATTTCAATCTCATCCAATCGCCTCCTCCATCCATGGACACTGAATTCCCCGGCTTCCTCATCCGCCCCTCCCATCACTACCTTCTCCCCACACTCCGCACCCACCAGACCTTCCTTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACCACAGGGCATTGATTTCGAACGCAACAGACTTCTTTGTAACCACTCGCTCACTTGCCCGCCTCCATGA ATGAAGGTCTGGGATTTCAATCTCATCCAATCGCCTCCTCCATCCATGGACACTGAATTCCCCGGCTTCCTCATCCGCCCCTCCCATCACTACCTTCTCCCCACACTCCGCACCCACCAGACCTTCCTTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACCACAGGGCATTGATTTCGAACGCAACAGACTTCTTTGTAACCACTCGCTCACTTGCCCGCCTCCATGA ATGAAGGTCTGGGATTTCAATCTCATCCAATCGCCTCCTCCATCCATGGACACTGAATTCCCCGGCTTCCTCATCCGCCCCTCCCATCACTACCTTCTCCCCACACTCCGCACCCACCAGACCTTCCTTTGGGAGTTCAATTTTAGGGATTTCGACGTCGCTCCTGACCTTCACGCGCCCGATTCCATCCATCTCTTGAAACCACAGGGCATTGATTTCGAACGCAACAGACTTCTTTGTAACCACTCGCTCACTTGCCCGCCTCCATGA MKVWDFNLIQSPPPSMDTEFPGFLIRPSHHYLLPTLRTHQTFLWEFNFRDFDVAPDLHAPDSIHLLKPQGIDFERNRLLCNHSLTCPPP Homology
BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_038901771.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida]) HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17 Identity = 64/145 (44.14%), Postives = 69/145 (47.59%), Query Frame = 0
BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_022957732.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6605970.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17 Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0
BLAST of CaUC02G047710 vs. NCBI nr
Match: KAG7035921.1 (putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17 Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0
BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_023534188.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_023534282.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17 Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0
BLAST of CaUC02G047710 vs. NCBI nr
Match: XP_022995114.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]) HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17 Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 3.8e-12 Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11 Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 1.3e-09 Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 6.7e-09 Identity = 34/118 (28.81%), Postives = 55/118 (46.61%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08 Identity = 35/98 (35.71%), Postives = 47/98 (47.96%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A6J1K4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111490755 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17 Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A6J1GZY2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459188 PE=3 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17 Identity = 62/140 (44.29%), Postives = 68/140 (48.57%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A0A0KI60 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_6G425790 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 3.1e-17 Identity = 63/145 (43.45%), Postives = 68/145 (46.90%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A5D3B887 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00210 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15 Identity = 60/145 (41.38%), Postives = 66/145 (45.52%), Query Frame = 0
BLAST of CaUC02G047710 vs. ExPASy TrEMBL
Match: A0A1S3BNU2 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103491668 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 5.0e-15 Identity = 60/145 (41.38%), Postives = 66/145 (45.52%), Query Frame = 0
BLAST of CaUC02G047710 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 72.0 bits (175), Expect = 2.7e-13 Identity = 43/95 (45.26%), Postives = 48/95 (50.53%), Query Frame = 0
BLAST of CaUC02G047710 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 67.8 bits (164), Expect = 5.1e-12 Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 0
BLAST of CaUC02G047710 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11 Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0
BLAST of CaUC02G047710 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11 Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0
BLAST of CaUC02G047710 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 9.6e-11 Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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