CaUC02G045700 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G045700
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionDNA polymerase epsilon subunit 3
LocationCiama_Chr02: 33474140 .. 33476690 (-)
RNA-Seq ExpressionCaUC02G045700
SyntenyCaUC02G045700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGGTATTCCTCCGGCGTGAGCTATATTCTTTTGCTCACACGTTTAACAGATTGACCAATGATCGTATATTCAAGAAGTTAATATGAGATGTATATAGTTTTTAGAAAAAGCTAACCAGACTAAGTTGAGATCAAACTCTTATGAACAAATGATAGTAAAACGATCAAGAAGTTGAGATCACAGACCTGCATGCACGACTTTCATTGCTTGAGAGAAGTGCCCCACTAAATCCACATAAATGTAGGGAGCAAACAACCTGCAAAGCTTGAAGACCTCAATGTTAACTTTCTAAGCACTAACAATGTTCTAGCACATCAAATTGGAGCAAGAAAGATGTAATTGACAAACTACAACATTTATTCCGCTATAACTAAGTGAAGATACATCCTGAATAGCACTTTATAAAATTTCTTTGGAGGAAGAAGCACCAACAAAACATCTTTGAGAATATAAATTTACACCATAAACATCAACTTCAGGAGTCATGCCTGAGACACTGAACTACGGAAAAGCATCTCCCGTTGAGAAAGATTTTAAATTCATCCACAACTCTTTTAGCTTACAGCACCATTTGAAGGAGAAAATGGCTTAGCATCATTTTGAAAATAAGATGCTGCTAGCCACTGTGTTGGTAATGCGATGCATTAAAGTCTCACATCAATTAAATAAGAGAATGATTATGGTTTATAAGAGAAGAAAATTATCTTTAATGGTTGAGACATTTTTTATGAAACCAAAAGTAAAGCTACGAGGGTTATGCCCAATGTGGACAATATCATACTGGAAATATCTAAAAGTTCATTGTCTCTCACAAACTGGAATGACGAATAACTTCTATCTCACAAACTGGAATGACGAATAACTTCTATACACGTCCAGTGTGTTAGAGCTCAATAGCCTTCATAAGTGAAAGATTGCTGAATATTGTCAACCTGCAAAACCCTTAAACTAAATTTAAACATGCCCACCTGATCCAATTGAAATCAAATGCTTTGACACTGATGCAGTAGCAAAATAACGATACGAAAGTAACGCCATTATGAAATATACCCATCTCAATCCTCAGCAAACTGGATACTGAAAGAACAGCAATGGTCTATTTTATAACTCTGAACCCAGAATTGCATACTACATACGTTGTAAGACTAGCCAATCAAAAAGAAACTTGCAATAGTTTCTTCTTGATATTTCTGTAAGAAACCTTTCTTTCAGGAGGTAACACGAAAATTTCTAAAGGATACGTTGTTCATACACAAGCTGAGACAGTCATTTGAAAATAAAGTAAGTCTATCAATAAACTTTAACATGCACCCAGAAGATAGTTCTAAGTTGTCGAAGTTTTCTTGGCTTTTTCAACCATGATTATGTAGTATCATACTTTGCTGTACATCGATAACAAACTTATAAAAGGGTCAACTATTATCCCATTAACTTTAGTACATGACAGATTTTTAACTTTCAAGATTGCGATTCTTTAATATAATTTTTTTGAGTTTGAAAATTGCCAGAACTTGTTCAACAATGACGGTTGTTGCTTATTGTAGTAAATTTGTAATATACTGGTTCTTGCAATCAGCAAATACCTTACCGAGTTCTTAGTAGCAAAATTCGTAAGATAACGGTTCTTGAATCCCATAGACAATGAAGAAATTACTATTTCATCCACAATTATAAACGCTGTAATGCCATAAGTTCGTCAATTAATGAATTTAAAAATCGAATTACAGATTCAATTTACGAGTGGGCGCGCAACCAAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAGCGTAAATTCATAAATTGACAATGATCAAGAATCTTTTTGCCAGAACATTGGAAAATGACTTGCAAAAACAAAGGTAACTAGAAGAAAAGAGACAACCTATACAACCATTCTTTAGACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTATATGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTCTTCATAGATCAATCCACTAATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTAGTAATACCCTGAATGTTGTCTCTCAGGACCTTCCTGTGACGCTTTGCTCCCCCCTTTCCCAATCCCTTGCCTCCTTTTCCACGGCCAGACATTTTCTCGATTGATTTGAGGAATGAACACTGAATTGATAGGTTGGAAGTTTTTGATATAATGCCCCAGTCCACTGGTTTGGGGTATTTATGAATGTATGATCCAGCACTCCAGATTCTAGTCGGCTTCCGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATCGAGGTTTGA

mRNA sequence

ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACGAGTGGGCGCGCAACCAAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAGCACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTATATGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTCTTCATAGATCAATCCACTAATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTAGTAATACCCTGAATGTTGTCTCTCAGGACCTTCCTATTCTAGTCGGCTTCCGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATCGAGGTTTGA

Coding sequence (CDS)

ATGCATAGAAGCAAACACGTGCTCAAGAGATCAAAAGAAAACATCGTTCGTGGTCCAAAAGACAAATTTGTTCATGAAGGACGCAAGCATCGCTACGGATTCAATTTACGAGTGGGCGCGCAACCAAAGAAGAAGAAGAAAGAGTGGAACAAACGAGTAGCAGCACTAAACCATAACCTAACCTCCGAAACCATACAAAGTCCTTCCCTGCCTTTTCAAGGCATAAACCACATCCATGGCAGTCACCGTCTTCCTCCTAGCGTGCTCAGTATATGTAACAGCATCACGAATCACATTCTCGAGGAAGATCTTCAAAACACCTCTGGTTTCTTCATAGATCAATCCACTAATACGCTTCACACCACCTCTACGAGCCAAACGGCGAATGGCAGGCTTAGTAATACCCTGAATGTTGTCTCTCAGGACCTTCCTATTCTAGTCGGCTTCCGAGTTCGGGAACAAAGCACCTTGTCCGTTGGATTTTATATCCATCGACGGTTCACAAGGGCGATCCGCGTGAAACCTTTTCGGATCGAGGTTTGA

Protein sequence

MHRSKHVLKRSKENIVRGPKDKFVHEGRKHRYGFNLRVGAQPKKKKKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRVREQSTLSVGFYIHRRFTRAIRVKPFRIEV
Homology
[Close]
BLAST of CaUC02G045700 vs. NCBI nr
Match: KAF3586617.1 (hypothetical protein F2Q69_00026051 [Brassica cretica])

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-20
Identity = 59/144 (40.97%), Postives = 94/144 (65.28%), Query Frame = 0 

Query: 33  GFNLRVGAQPKKK----KKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSV 92
           G  L +  +PKKK      + ++ +  ++ +LT+ET++S SLP Q INHIH S+ LPP V
Sbjct: 238 GRKLLLVKKPKKKFPNSDPQTSQTLNPISVDLTAETVESASLPLQSINHIHSSNSLPPRV 297

Query: 93  LSICNSITNHILEEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVG 152
           LS+C+S+T+ ILE+DL+++SG  +DQ+ NTL  TS S+T NGRL +TL+V+ + LP+ +G
Sbjct: 298 LSVCDSVTDDILEKDLEDSSGLLVDQTANTLDATSASKTTNGRLGDTLDVIPKHLPMPLG 357

Query: 153 FRVREQSTLSVGFYIHRRFTRAIR 173
             + +  +     Y   R+   +R
Sbjct: 358 SSLSQSFSSFPXSYSFSRYNWFLR 381

[Close]
BLAST of CaUC02G045700 vs. NCBI nr
Match: AFK43746.1 (unknown [Lotus japonicus])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 51/105 (48.57%), Postives = 74/105 (70.48%), Query Frame = 0 

Query: 52  RVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFF 111
           R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LS+ NSITNHIL++DL+NT+   
Sbjct: 23  RLIENRETLTPKSIECPSLSLESIHHIHGSNSLPPSMLSVGNSITNHILKKDLENTTSLL 82

Query: 112 IDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRVREQST 157
           IDQ+T+TLH T  SQT N  L ++L+VV++DL +  G  + +  T
Sbjct: 83  IDQATDTLHATPASQTPNRWLRDSLDVVAEDLTVPFGSSLAQSFT 127

[Close]
BLAST of CaUC02G045700 vs. NCBI nr
Match: KAG6540107.1 (hypothetical protein Mapa_018562 [Marchantia paleacea])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-17
Identity = 47/96 (48.96%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 53  VAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFI 112
           +AA  H L+SE++QS SL  QG++HIH S  L P VL + + I++H+L++DLQN++  FI
Sbjct: 6   MAAAEHILSSESVQSSSLSLQGVHHIHSSDSLSPRVLGVSHGISDHVLQKDLQNSASLFI 65

Query: 113 DQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVG 149
           +Q  +TLH++S+SQT +G L N LNV+S+ LP+ +G
Sbjct: 66  NQPADTLHSSSSSQTPDGGLRNPLNVISEHLPVSLG 101

[Close]
BLAST of CaUC02G045700 vs. NCBI nr
Match: KAF1894647.1 (hypothetical protein Lal_00027024 [Lupinus albus])

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-17
Identity = 48/85 (56.47%), Postives = 68/85 (80.00%), Query Frame = 0 

Query: 59  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNT 118
           NLT++TI+ PSL  + IN+IH S+RLPPS+ SI N ITNHIL+ED +NTS  FI+Q+T++
Sbjct: 6   NLTTKTIEGPSLSLESINNIHSSNRLPPSMFSISNCITNHILQEDFENTSRLFINQTTDS 65

Query: 119 LHTTSTSQTANGRLSNTLNVVSQDL 144
            HT+S+ Q+ N R  ++LNVV+Q+L
Sbjct: 66  FHTSSSRQSPNRRFCDSLNVVAQNL 90

[Close]
BLAST of CaUC02G045700 vs. NCBI nr
Match: VDD41806.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-16
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 0 

Query: 41  QPKKKKKEWNKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHIL 100
           Q K+K  + ++ +  ++ +LT+ET++S SLP Q INHIHG   LPP VL + + I + IL
Sbjct: 825 QQKQKIPKLSETLIPISVDLTAETVESASLPLQSINHIHGCDSLPPRVLGVGDGIADDIL 884

Query: 101 EEDLQNTSGFFIDQSTNTLHTTSTSQTANGRLSNTLNV-VSQDLPILVGFRVREQSTLSV 160
           EEDL+++SG  +DQ+ NTL TTSTS+T NGRL+  + V V     +L+    R   T+ +
Sbjct: 885 EEDLEDSSGLLVDQTANTLDTTSTSKTTNGRLAVIVAVPVFYLRLVLISSPPRAVVTMFL 944

Query: 161 GFYIHRRF 168
             +I RRF
Sbjct: 945 TRFIGRRF 952

[Close]
BLAST of CaUC02G045700 vs. ExPASy TrEMBL
Match: I3SU04 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-18
Identity = 51/105 (48.57%), Postives = 74/105 (70.48%), Query Frame = 0 

Query: 52  RVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFF 111
           R+      LT ++I+ PSL  + I+HIHGS+ LPPS+LS+ NSITNHIL++DL+NT+   
Sbjct: 23  RLIENRETLTPKSIECPSLSLESIHHIHGSNSLPPSMLSVGNSITNHILKKDLENTTSLL 82

Query: 112 IDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPILVGFRVREQST 157
           IDQ+T+TLH T  SQT N  L ++L+VV++DL +  G  + +  T
Sbjct: 83  IDQATDTLHATPASQTPNRWLRDSLDVVAEDLTVPFGSSLAQSFT 127

[Close]
BLAST of CaUC02G045700 vs. ExPASy TrEMBL
Match: V9IKG5 (Uncharacterized protein OS=Apis cerana OX=7461 GN=ACCB12939 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = 0 

Query: 54  AALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFID 113
           AA+ H LT++T++  SL  Q +N+IHGS+ LP  +LS+ +SI+++I +E LQ TS FF+D
Sbjct: 12  AAIEHQLTTKTVKGSSLTLQSVNYIHGSYSLPLGMLSVSDSISDNIFQEYLQYTSCFFVD 71

Query: 114 QSTNTLHTTSTSQTANGRLSNTLNVVSQDL 144
           QS NTLHTT+TS+T NG   NTL+V++Q+L
Sbjct: 72  QSRNTLHTTTTSKTTNGWFGNTLDVITQNL 101

[Close]
BLAST of CaUC02G045700 vs. ExPASy TrEMBL
Match: A0A6A5PAG4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00027024 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 48/85 (56.47%), Postives = 68/85 (80.00%), Query Frame = 0 

Query: 59  NLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQSTNT 118
           NLT++TI+ PSL  + IN+IH S+RLPPS+ SI N ITNHIL+ED +NTS  FI+Q+T++
Sbjct: 6   NLTTKTIEGPSLSLESINNIHSSNRLPPSMFSISNCITNHILQEDFENTSRLFINQTTDS 65

Query: 119 LHTTSTSQTANGRLSNTLNVVSQDL 144
            HT+S+ Q+ N R  ++LNVV+Q+L
Sbjct: 66  FHTSSSRQSPNRRFCDSLNVVAQNL 90

[Close]
BLAST of CaUC02G045700 vs. ExPASy TrEMBL
Match: A0A1J3E1Q1 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR14670_c0_g1_i1_g.45534 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-16
Identity = 48/96 (50.00%), Postives = 76/96 (79.17%), Query Frame = 0 

Query: 50  NKRVAALNHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSG 109
           N+R+   +   T+E+I+S +L  Q I++IH SHRLPP VLS+ +S+++ ILE+DLQN+S 
Sbjct: 66  NRRIQIFS---TAESIESTALSLQRIHNIHCSHRLPPRVLSVSHSVSDDILEKDLQNSSR 125

Query: 110 FFIDQSTNTLHTTSTSQTANGRLSNTLNVVSQDLPI 146
           FF+DQ+ ++LH +STS++ N RL ++L+VVSQ+LP+
Sbjct: 126 FFVDQAADSLHASSTSKSPNRRLRDSLDVVSQNLPV 158

[Close]
BLAST of CaUC02G045700 vs. ExPASy TrEMBL
Match: A0A7G3AFY5 (Putative conserved secreted protein (Fragment) OS=Lutzomyia longipalpis OX=7200 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.1e-16
Identity = 45/92 (48.91%), Postives = 68/92 (73.91%), Query Frame = 0 

Query: 57  NHNLTSETIQSPSLPFQGINHIHGSHRLPPSVLSICNSITNHILEEDLQNTSGFFIDQST 116
           +H L +E ++S +L F+GI+ +H SH L   VL + +S+TNH+L+E L+NTSGFFID+  
Sbjct: 16  HHCLATEAVESTALAFEGIHDVHSSHGLTFCVLCVSHSVTNHVLKEHLKNTSGFFIDEPR 75

Query: 117 NTLHTTSTSQTANGRLSNTLNVVSQDLPILVG 149
           NTLHTT+T QT N  L +TL++V++ L + +G
Sbjct: 76  NTLHTTTTGQTTNSWLRDTLDIVTKHLAMTLG 107

The following BLAST results are available for this feature:
BLAST of CaUC02G045700 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3586617.13.3e-2040.97hypothetical protein F2Q69_00026051 [Brassica cretica][more]
AFK43746.11.2e-1748.57unknown [Lotus japonicus][more]
KAG6540107.12.6e-1748.96hypothetical protein Mapa_018562 [Marchantia paleacea][more]
KAF1894647.13.4e-1756.47hypothetical protein Lal_00027024 [Lupinus albus][more]
VDD41806.18.4e-1643.75unnamed protein product [Brassica oleracea][more]
BLAST of CaUC02G045700 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G045700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
I3SU045.7e-1848.57Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
V9IKG51.7e-1753.33Uncharacterized protein OS=Apis cerana OX=7461 GN=ACCB12939 PE=2 SV=1[more]
A0A6A5PAG41.7e-1756.47Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00027024 PE=4 SV=1[more]
A0A1J3E1Q13.1e-1650.00Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR146... [more]
A0A7G3AFY54.1e-1648.91Putative conserved secreted protein (Fragment) OS=Lutzomyia longipalpis OX=7200 ... [more]
BLAST of CaUC02G045700 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47749FAMILY NOT NAMEDcoord: 55..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G045700.1CaUC02G045700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
cellular_component GO:0005694 chromosome
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0016020 membrane
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding