CaUC02G036860 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G036860
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Signal sequence receptor subunit alpha
Location	Ciama_Chr02: 22442503 .. 22446072 (+)
RNA-Seq Expression	CaUC02G036860
Synteny	CaUC02G036860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTCTCTCTGGTTCTATTGCATTTGCTGCTAGAGCTCCGTCGATTTTTCTGTTGGATCTTGTACGTGTTAGATTTGCTAATTTTCAGCTATAATCTTCACGGTGATTTTTTTCTTCAACATTTAATGCTGTTCGATAGCATTTCTGTGACTCTTCGACTCTCTTATAATTGGGCAGCGTCTTTAGCGTATCCATATCAACTGTATAAATTAAGGTCGATATTTGGGTTCGTTGAGCGGAGTTTGATCCGCGCGATTCTAGTGTTTTCGTTCTGGTTAATAGCTGGCTTTAGGTTGTTCTTCAGTTAAAAATTAAAATTGTTATCCATCTTCCACACGATGTGATGAATCTGTATACTTCAGTTCTTCCTTTGTTTTTATGTATTTCGTTTCTTTTCCTTCTTAAGTTGTTAGATGTCAATCGGATGCGGATGTGGAATCTGAAGATGCTGCCGCTGACGATGCCACTGACTTAGGGATTGTTGCGGAGAATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTGCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCCCGTAGTGAGTATTCCATTTAAGTTGAACAGAAATATATTCTTTTCAATATGATGTAAAATAGTATAATTAATTTATAATTTCTCCAAATGCAGTAGTGGTGGCCGGAGAAGAGACTGAACTATTGGCCGGAGTGAAAAATAATGGTAATTGACCCTTCCTGTCAACTACAAGTGTTGTGTTGTCGTCATTTTTGAATAATCAGCAACATATAGCAGTTTTATAATTCATTTGGTGCCTTTGATTGTTGCTGCCTTGTCTTCTCACGGGGCAGTGCACGATTTCCAGTTTGTGTTTCCTGATTCTTCCTGTTTTTCCAATTTGTGCGTTGATAATTTTATTTAATCTCTGTTTTCTTCATGTATTAATACCTTTTTCGTTAAATATTTTTATCTGTAATTTTGAGGGTTATTAGGGCTCGGGTGCACAAAAATGAAAAAACAGTGAGGTCGCTTATCGATACCTCGAGCTGCGGTTAAAAACTTTCTCTTGAAAGGATCGTTTGAAGTTTTCCTTCATGTATTCTTGATGATGGAGTCTCCTGATGTTATACCTTTTTTTCCCCTCTCAATTGCTGCTAGTTATCTGCTGTGTTTCTTACTTCATTTCTTTTGGTGAAAAAAATAGGGGATTCTAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACTTTCGATCATCAATTACTGATTCAAAATCTTACCGCACTGGTATGTGACTGCATGGTTAATGTCTACAGGTTTCTTTTTACCCCACCAATTCATTGCATAACATAACCTGTATCTGGTCTGCCATATGCAAGTATAATTTTATGCCAAGAAAATTTCAGAACTTTTGCTCACTGGGTTCAAGTATGCATGATGTAAGCATCATTTACCTATTTTGTATGTTAGGGGGATGAATTCTTGATTGAGTTAAAGCTGTGAGATATGAGCTAAGTTTCTTAAGGAGCCCTTTCTTAGGTCTTGGAGGTTGGTCCTGCTTTAGCTTATAGTTAGAGTCTGTAATATAAATCAACTTTCTTGGGCTCAGAAGCCTAGGAGGATACGGTAACGCCGTTTGCCTTGACCTATTAAAATTTAATATAGTAATCGTCACGACATAGACTCCACACAAAAAACGGCTACTGGATAAACTACAAAGAAATGTACAGTCTAAAGACTAGGGAAGGGGAAACCCAGCCACATAAAGACTACAACAAGGCACTACAATCAAGAACTGCTGATTAAAAATATATATATATATATATATATATATATATATTACAATTACAAAAATTGTGTGTAGCTGGCCGTACATTTCTTTTATCAACGAACATATTTTTGTTTTTTTTTAAAAAAATCAATGCGTTGAAAATACTCGATCAAGATTGAAGGAATTCAACCAGATTTCCCATCTTGAATGGAATGGTAAAATGGGCAATAAACAAAAAAGCAATGAAGGTCCTTCTTTGCATGCTCAGGATAAACAACTCTGCGTCTTCGGAGGTGAAGGCTTGCGCCGGGGAGTCGAAAGCGTCGACCTCCATGAGAGTGGTGAGGAAGCCTTCTTGGGTCATCAGATTCGATCACATAGGAGACATCGCGTCAAGAGCACATGGAAAGACTAATCTAATTCTAAGAAAGGCTTTTCGCTTTTCACTTCCGAAGAAGGGGCTTTACCAAGGGGGCAATGGGAGAAGGTCTCTGCCACCATTTATAAGCCCTCAAGTAGGTAACCCCGAAAGAGGGAAGAGATTTTCGCCAGTCAATCCACCGTTTTCTTGCTTGGTGCGCTAGTGCACCTGACTTAGTCGTAGGCGTTTTCTTCGCTGGGTTAGATTCCCGATCCACCAACTATCTGAAATGTTGGCAAACAGGGCTTCATCATNTGCCGCTGACGATGCCACTGACTTAGGGATTGTTGCGGAGAATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTGCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCACGTAGTAAGTATTCCATTTAAGTTGAACAGAAATATATTCTTTTCAATATGATGTAAAATGGTATAATTAATTTATAATTTCTCCAAATGCAGTAGTGGTGGCCGGAGAAGAGACTGAACTATTGGCCGGAGTGAAAAATAATGGTAATTGACCCTTCCTGTCAACTACAAGTGTTGTGTTGTCGTCATTTTTGAATAATCAGCAACATATAGCAGTTTTATAATTCATTTGGTGCCTTTGATTGTTGCTGCCTTGTCTTCTCACGGGGCAATGCACGATTTCCAGTTTGTGTTTCCTGATTCTTCCTGTTTTTCCAATTTGTGCATTGTTAATTTTATTTAATCTCCGTTTTCTTCATGTATTAATACCTTTTTCGTTAAATATTTTTATCTGTACTTTTTGAGGGTTATTAGGGCTCGGGTGCACAAAAATGAAAAAACAGTGAGGTCGCTTATCGATACCTCGAGCTGCAGTTAAAAACTTTCTCTTGAAAGGATTGTTTGAAGTTTTCCTTCATGTATTCTTGATGATGGAGTCTCCTGATGTTATACCTTTTTTTCCCCTCAATTGCTCCTAGTTGTCTGCTGTGTTTCTTACTTCATTTCTTTTGGTGAAAAAAATAGGGGATTCTAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACTTTCGATCATCGATTACTGATTCAAAATCTTACCGCACTGGTATGTGACTGCATGGTTAATGTCTGCAGGTTTCTTTTTACCCCATCAATTCATTGCATAACATAACCTGTATCTGGTCTGCCATATGCAAGTATAATTTTATGCCAAGAAAATTTCAGAACTTTTGCTCACTGGGTTCAAGTATGCATGATGTAAGCATCATTTACCTATTTTGTATGTTAGGGGGATGAATTCTTGATTGAGTTAAAGCTGTGAGATATGAGCTAAGTTTCTTAAGGAGCCCTTTCTTAGGTCTTGGAGGTTGGTCCTGCTTTAGCTTATAGTTAG

mRNA sequence

ATGCATTTCTCTCTGGTTCTATTGCATTTGCTGCTAGAGCTCCGTCGATTTTTCTGTTGGATCTTGTACGTGTTAGATTTGCTAATTTTCAGCTATAATCTTCACGGTGATTTTTTTCTTCAACATTTAATGCTGTTCGATAGCATTTCTGTGACTCTTCGACTCTCTTATAATTGGGCAGCGTCTTTAGCGTATCCATATCAACTATGTCAATCGGATGCGGATGTGGAATCTGAAGATGCTGCCGCTGACGATGCCACTGACTTAGGGATTGTTGCGGAGAATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTGCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCCCGTATAGTGGTGGCCGGAGAAGAGACTGAACTATTGGCCGGAGTGAAAAATAATGGGGATTCTAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACTTTCGATCATCAATTACTGATTCAAAATCTTACCGCACTGGTATGTGACTGCATGGTTAATGTCTACAGGGCTTCATCATNTGCCGCTGACGATGCCACTGACTTAGGGATTGTTGCGGAGAATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTGCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCACGTATAGTGGTGGCCGGAGAAGAGACTGAACTATTGGCCGGAGTGAAAAATAATGGGGATTCTAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACTTTCGATCATCGATTACTGATTCAAAATCTTACCGCACTGGTCTTGGAGGTTGGTCCTGCTTTAGCTTATAGTTAG

Coding sequence (CDS)

ATGCATTTCTCTCTGGTTCTATTGCATTTGCTGCTAGAGCTCCGTCGATTTTTCTGTTGGATCTTGTACGTGTTAGATTTGCTAATTTTCAGCTATAATCTTCACGGTGATTTTTTTCTTCAACATTTAATGCTGTTCGATAGCATTTCTGTGACTCTTCGACTCTCTTATAATTGGGCAGCGTCTTTAGCGTATCCATATCAACTATGTCAATCGGATGCGGATGTGGAATCTGAAGATGCTGCCGCTGACGATGCCACTGACTTAGGGATTGTTGCGGAGAATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTGCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCCCGTATAGTGGTGGCCGGAGAAGAGACTGAACTATTGGCCGGAGTGAAAAATAATGGGGATTCTAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACTTTCGATCATCAATTACTGATTCAAAATCTTACCGCACTGGTATGTGACTGCATGGTTAATGTCTACAGGGCTTCATCATNTGCCGCTGACGATGCCACTGACTTAGGGATTGTTGCGGAGAATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTGCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCACGTATAGTGGTGGCCGGAGAAGAGACTGAACTATTGGCCGGAGTGAAAAATAATGGGGATTCTAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACTTTCGATCATCGATTACTGATTCAAAATCTTACCGCACTGGTCTTGGAGGTTGGTCCTGCTTTAGCTTATAGTTAG

Protein sequence

MHFSLVLLHLLLELRRFFCWILYVLDLLIFSYNLHGDFFLQHLMLFDSISVTLRLSYNWAASLAYPYQLCQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLTALVCDCMVNVYRASSXAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTALVLEVGPALAYS

Homology

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BLAST of CaUC02G036860 vs. NCBI nr
Match: PWA79033.1 (translocon-associated protein (TRAP), alpha subunit [Artemisia annua])

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-44
Identity = 108/241 (44.81%), Postives = 148/241 (61.41%), Query Frame = 0


Query: 70  CQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEE 129
           CQSD++     A   +  +LGIV +   DFG G++S A GV+TVCVFPKN+A+ VVAG+E
Sbjct: 133 CQSDSEDAELVAETVEEGNLGIVDDEVQDFGIGNYSPAPGVETVCVFPKNAAKTVVAGQE 192

Query: 130 TELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLTA--------------------- 189
           TELL G+KN GD  + V+A+ ASVH  FDH++L+QNL+A                     
Sbjct: 193 TELLIGMKNEGDQHVKVLAVHASVHLPFDHRMLVQNLSAVAFNNASVPPSVQATFPYIFA 252

Query: 190 ----------LVCDCMVNVYRASSXAAD--------DATDLGIVAENELDFGDGSFSAAA 249
                     L+    + + R  S + D        +  +LGIV +   DFG G++S A 
Sbjct: 253 VSKFLQVDLSLLLQLFITMVRCQSDSEDAELVAETVEEGNLGIVDDEVQDFGIGNYSPAP 312

Query: 250 GVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTA 272
           GV+TVCVFPKN+A+ VVAG+ETELL G+KN GD  + V+A+ ASVH  FDHR+L+QNL+A
Sbjct: 313 GVETVCVFPKNAAKTVVAGQETELLIGMKNEGDQHVKVLAVHASVHLPFDHRMLVQNLSA 372

[Close]

BLAST of CaUC02G036860 vs. NCBI nr
Match: XP_038902527.1 (translocon-associated protein subunit alpha [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-41
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 70  CQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEE 129
           CQSDADVESEDAA DDATDLGIV E+ELDFGDGSFSAA GVDTVCVFPKNSAR+VVAGEE
Sbjct: 26  CQSDADVESEDAAVDDATDLGIVGEDELDFGDGSFSAAPGVDTVCVFPKNSARLVVAGEE 85

Query: 130 TELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLTA 169
           TELLAG+KNNGDSSLNVIAIKASVHYTFDH+LLIQNLTA
Sbjct: 86  TELLAGIKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTA 124

[Close]

BLAST of CaUC02G036860 vs. NCBI nr
Match: XP_008457651.1 (PREDICTED: translocon-associated protein subunit alpha [Cucumis melo] >KAA0045696.1 translocon-associated protein subunit alpha [Cucumis melo var. makuwa] >TYJ99586.1 translocon-associated protein subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-39
Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 50  SVTLRLSYNWAASLAYPY---QLCQSDADVESEDAAADDATDLGIVAENELDFGDGSFSA 109
           S+ LR+ +     LA P+     CQSDA+ ESE+A  DDATDLGIV E ELD+GDGSFSA
Sbjct: 3   SMALRIFFLALLLLASPFLQVVRCQSDAETESEEAVVDDATDLGIVGEEELDYGDGSFSA 62

Query: 110 AAGVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNL 169
           A GVDTVCVFPKNSAR+VVAGEETE+LAGVKNNGDSSLNV+AIKASVHYTFDH+LLIQNL
Sbjct: 63  APGVDTVCVFPKNSARLVVAGEETEILAGVKNNGDSSLNVLAIKASVHYTFDHRLLIQNL 122

Query: 170 TALVCDCMVNVYRASSXAADDAT 190
           +A      V    AS  A+  AT
Sbjct: 123 SA------VTFNNASVPASSQAT 139

[Close]

BLAST of CaUC02G036860 vs. NCBI nr
Match: XP_004147020.1 (translocon-associated protein subunit alpha [Cucumis sativus] >KGN61898.1 hypothetical protein Csa_006583 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 3.8e-39
Identity = 92/120 (76.67%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 70  CQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEE 129
           CQSDA+ ESE+AA DDATDLGIV E ELD+GDGSFSAA G+DTVCVFPKNSAR+VVAGEE
Sbjct: 26  CQSDAESESEEAAVDDATDLGIVGEEELDYGDGSFSAAPGIDTVCVFPKNSARLVVAGEE 85

Query: 130 TELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLTALVCDCMVNVYRASSXAADDAT 189
           TE+LAGVKNNGDSSLNVIAIKASVHYTFDH+LLIQNL+A      V    AS  A+  AT
Sbjct: 86  TEILAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLSA------VGFNNASVPASSQAT 139

[Close]

BLAST of CaUC02G036860 vs. NCBI nr
Match: GER55255.1 (translocon-associated protein [Striga asiatica])

HSP 1 Score: 168.3 bits (425), Expect = 9.4e-38
Identity = 111/326 (34.05%), Postives = 158/326 (48.47%), Query Frame = 0


Query: 70  CQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEE 129
           C+ D D E  D ++++  D+GIV ++  DFG GSFS A GV+TVCVFPKN A+++ AGEE
Sbjct: 24  CEQDPDAEVVD-SSEEVVDIGIVGDDVQDFGGGSFSPAPGVETVCVFPKNPAKLIGAGEE 83

Query: 130 TELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLT---------------------- 189
           +ELL G+KN G+S++N+IAI+ASVH  FDH+ L+QNL+                      
Sbjct: 84  SELLVGLKNEGESTINIIAIQASVHLPFDHRYLLQNLSTQAFNNATVPSSAQATFPYIFG 143

Query: 190 --------------ALVCDCMVNVYR---------------------------------- 249
                          +V +   N Y+                                  
Sbjct: 144 LSKFLQPGSYDLVGTIVYEIDQNPYQNTFYNGTIEVTEVGGLLSVESVFLFCLGKTKRVT 203

Query: 250 ----------ASS---------------------------------------------XA 271
                     AS+                                              +
Sbjct: 204 KVEVGTGTTDASNDEWLQVFDRHCLLYSIFGQTKEEEVDYHAHAVVLARCEQGDAEVVDS 263

[Close]

BLAST of CaUC02G036860 vs. ExPASy Swiss-Prot
Match: P45434 (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana OX=3702 GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 89.7 bits (221), Expect = 5.6e-17
Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 169 LVCDCMVNVYRASSXAADDATDL-GIVAENELDFG-------DGSFSAAAGVDTVCVFPK 228
           L+   ++ V R  S A D ++ +  +V EN  D         D + S+  GV+TVCVFPK
Sbjct: 13  LLASPLLQVARCQSDAEDHSSLVDDVVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPK 72

Query: 229 NSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTALVL 274
           NSA++V AGEETELL G+KN G + + V+ I+ASVH  +DH+LL+QNLT L L
Sbjct: 73  NSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRL 125

[Close]

BLAST of CaUC02G036860 vs. ExPASy TrEMBL
Match: A0A2U1NZT6 (Signal sequence receptor subunit alpha OS=Artemisia annua OX=35608 GN=CTI12_AA208850 PE=3 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.0e-45
Identity = 108/241 (44.81%), Postives = 148/241 (61.41%), Query Frame = 0


Query: 70  CQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEE 129
           CQSD++     A   +  +LGIV +   DFG G++S A GV+TVCVFPKN+A+ VVAG+E
Sbjct: 133 CQSDSEDAELVAETVEEGNLGIVDDEVQDFGIGNYSPAPGVETVCVFPKNAAKTVVAGQE 192

Query: 130 TELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLTA--------------------- 189
           TELL G+KN GD  + V+A+ ASVH  FDH++L+QNL+A                     
Sbjct: 193 TELLIGMKNEGDQHVKVLAVHASVHLPFDHRMLVQNLSAVAFNNASVPPSVQATFPYIFA 252

Query: 190 ----------LVCDCMVNVYRASSXAAD--------DATDLGIVAENELDFGDGSFSAAA 249
                     L+    + + R  S + D        +  +LGIV +   DFG G++S A 
Sbjct: 253 VSKFLQVDLSLLLQLFITMVRCQSDSEDAELVAETVEEGNLGIVDDEVQDFGIGNYSPAP 312

Query: 250 GVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTA 272
           GV+TVCVFPKN+A+ VVAG+ETELL G+KN GD  + V+A+ ASVH  FDHR+L+QNL+A
Sbjct: 313 GVETVCVFPKNAAKTVVAGQETELLIGMKNEGDQHVKVLAVHASVHLPFDHRMLVQNLSA 372

[Close]

BLAST of CaUC02G036860 vs. ExPASy TrEMBL
Match: A0A5A7TU84 (Signal sequence receptor subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001580 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.3e-40
Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 50  SVTLRLSYNWAASLAYPY---QLCQSDADVESEDAAADDATDLGIVAENELDFGDGSFSA 109
           S+ LR+ +     LA P+     CQSDA+ ESE+A  DDATDLGIV E ELD+GDGSFSA
Sbjct: 3   SMALRIFFLALLLLASPFLQVVRCQSDAETESEEAVVDDATDLGIVGEEELDYGDGSFSA 62

Query: 110 AAGVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNL 169
           A GVDTVCVFPKNSAR+VVAGEETE+LAGVKNNGDSSLNV+AIKASVHYTFDH+LLIQNL
Sbjct: 63  APGVDTVCVFPKNSARLVVAGEETEILAGVKNNGDSSLNVLAIKASVHYTFDHRLLIQNL 122

Query: 170 TALVCDCMVNVYRASSXAADDAT 190
           +A      V    AS  A+  AT
Sbjct: 123 SA------VTFNNASVPASSQAT 139

[Close]

BLAST of CaUC02G036860 vs. ExPASy TrEMBL
Match: A0A1S3C642 (Signal sequence receptor subunit alpha OS=Cucumis melo OX=3656 GN=LOC103497301 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.3e-40
Identity = 97/143 (67.83%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 50  SVTLRLSYNWAASLAYPY---QLCQSDADVESEDAAADDATDLGIVAENELDFGDGSFSA 109
           S+ LR+ +     LA P+     CQSDA+ ESE+A  DDATDLGIV E ELD+GDGSFSA
Sbjct: 3   SMALRIFFLALLLLASPFLQVVRCQSDAETESEEAVVDDATDLGIVGEEELDYGDGSFSA 62

Query: 110 AAGVDTVCVFPKNSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNL 169
           A GVDTVCVFPKNSAR+VVAGEETE+LAGVKNNGDSSLNV+AIKASVHYTFDH+LLIQNL
Sbjct: 63  APGVDTVCVFPKNSARLVVAGEETEILAGVKNNGDSSLNVLAIKASVHYTFDHRLLIQNL 122

Query: 170 TALVCDCMVNVYRASSXAADDAT 190
           +A      V    AS  A+  AT
Sbjct: 123 SA------VTFNNASVPASSQAT 139

[Close]

BLAST of CaUC02G036860 vs. ExPASy TrEMBL
Match: A0A0A0LJC2 (Signal sequence receptor subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_2G263930 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-39
Identity = 92/120 (76.67%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 70  CQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEE 129
           CQSDA+ ESE+AA DDATDLGIV E ELD+GDGSFSAA G+DTVCVFPKNSAR+VVAGEE
Sbjct: 26  CQSDAESESEEAAVDDATDLGIVGEEELDYGDGSFSAAPGIDTVCVFPKNSARLVVAGEE 85

Query: 130 TELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLTALVCDCMVNVYRASSXAADDAT 189
           TE+LAGVKNNGDSSLNVIAIKASVHYTFDH+LLIQNL+A      V    AS  A+  AT
Sbjct: 86  TEILAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLSA------VGFNNASVPASSQAT 139

[Close]

BLAST of CaUC02G036860 vs. ExPASy TrEMBL
Match: A0A5A7RC41 (Signal sequence receptor subunit alpha OS=Striga asiatica OX=4170 GN=STAS_32901 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.6e-38
Identity = 111/326 (34.05%), Postives = 158/326 (48.47%), Query Frame = 0


Query: 70  CQSDADVESEDAAADDATDLGIVAENELDFGDGSFSAAAGVDTVCVFPKNSARIVVAGEE 129
           C+ D D E  D ++++  D+GIV ++  DFG GSFS A GV+TVCVFPKN A+++ AGEE
Sbjct: 24  CEQDPDAEVVD-SSEEVVDIGIVGDDVQDFGGGSFSPAPGVETVCVFPKNPAKLIGAGEE 83

Query: 130 TELLAGVKNNGDSSLNVIAIKASVHYTFDHQLLIQNLT---------------------- 189
           +ELL G+KN G+S++N+IAI+ASVH  FDH+ L+QNL+                      
Sbjct: 84  SELLVGLKNEGESTINIIAIQASVHLPFDHRYLLQNLSTQAFNNATVPSSAQATFPYIFG 143

Query: 190 --------------ALVCDCMVNVYR---------------------------------- 249
                          +V +   N Y+                                  
Sbjct: 144 LSKFLQPGSYDLVGTIVYEIDQNPYQNTFYNGTIEVTEVGGLLSVESVFLFCLGKTKRVT 203

Query: 250 ----------ASS---------------------------------------------XA 271
                     AS+                                              +
Sbjct: 204 KVEVGTGTTDASNDEWLQVFDRHCLLYSIFGQTKEEEVDYHAHAVVLARCEQGDAEVVDS 263

[Close]

BLAST of CaUC02G036860 vs. TAIR 10
Match: AT2G21160.1 (Translocon-associated protein (TRAP), alpha subunit )

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-18
Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 169 LVCDCMVNVYRASSXAADDATDL-GIVAENELDFG-------DGSFSAAAGVDTVCVFPK 228
           L+   ++ V R  S A D ++ +  +V EN  D         D + S+  GV+TVCVFPK
Sbjct: 13  LLASPLLQVARCQSDAEDHSSLVDDVVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPK 72

Query: 229 NSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTALVL 274
           NSA++V AGEETELL G+KN G + + V+ I+ASVH  +DH+LL+QNLT L L
Sbjct: 73  NSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRL 125

[Close]

BLAST of CaUC02G036860 vs. TAIR 10
Match: AT2G21160.2 (Translocon-associated protein (TRAP), alpha subunit )

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-18
Identity = 53/113 (46.90%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 169 LVCDCMVNVYRASSXAADDATDL-GIVAENELDFG-------DGSFSAAAGVDTVCVFPK 228
           L+   ++ V R  S A D ++ +  +V EN  D         D + S+  GV+TVCVFPK
Sbjct: 13  LLASPLLQVARCQSDAEDHSSLVDDVVGENTDDAVEEDDHDLDMNLSSFPGVETVCVFPK 72

Query: 229 NSARIVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTALVL 274
           NSA++V AGEETELL G+KN G + + V+ I+ASVH  +DH+LL+QNLT L L
Sbjct: 73  NSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRL 125

[Close]

BLAST of CaUC02G036860 vs. TAIR 10
Match: AT2G16595.1 (Translocon-associated protein (TRAP), alpha subunit )

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-15
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 169 LVCDCMVNVYRASSXAADDATDLGIVAENELD----FGDGSFSAAAGVDTVCVFPKNSAR 228
           L+    + V    S + D   ++  V E E D    FG    ++A G++T+CVFPKNSA+
Sbjct: 14  LLVSPFLKVALCQSDSEDSGFEVSDVGEEESDAEEVFG-LELTSAPGIETLCVFPKNSAK 73

Query: 229 IVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTAL 272
           I+ AG ETELL G+KN+G S+++++A+K S+H  FD    +QNLTAL
Sbjct: 74  IIKAGVETELLVGMKNDGQSNVDIVAVKGSLHLPFDQN-AVQNLTAL 118

The following BLAST results are available for this feature:

BLAST of CaUC02G036860 vs. NCBI nr


Match Name	E-value	Identity	Description
PWA79033.1	1.0e-44	44.81	translocon-associated protein (TRAP), alpha subunit [Artemisia annua]	[more]
XP_038902527.1	1.1e-41	92.93	translocon-associated protein subunit alpha [Benincasa hispida]	[more]
XP_008457651.1	1.7e-39	67.83	PREDICTED: translocon-associated protein subunit alpha [Cucumis melo] >KAA004569...	[more]
XP_004147020.1	3.8e-39	76.67	translocon-associated protein subunit alpha [Cucumis sativus] >KGN61898.1 hypoth...	[more]
GER55255.1	9.4e-38	34.05	translocon-associated protein [Striga asiatica]	[more]

BLAST of CaUC02G036860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P45434	5.6e-17	46.90	Translocon-associated protein subunit alpha OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of CaUC02G036860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2U1NZT6	5.0e-45	44.81	Signal sequence receptor subunit alpha OS=Artemisia annua OX=35608 GN=CTI12_AA20...	[more]
A0A5A7TU84	8.3e-40	67.83	Signal sequence receptor subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C642	8.3e-40	67.83	Signal sequence receptor subunit alpha OS=Cucumis melo OX=3656 GN=LOC103497301 P...	[more]
A0A0A0LJC2	1.8e-39	76.67	Signal sequence receptor subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_2G26393...	[more]
A0A5A7RC41	4.6e-38	34.05	Signal sequence receptor subunit alpha OS=Striga asiatica OX=4170 GN=STAS_32901 ...	[more]

BLAST of CaUC02G036860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21160.1	4.0e-18	46.90	Translocon-associated protein (TRAP), alpha subunit	[more]
AT2G21160.2	4.0e-18	46.90	Translocon-associated protein (TRAP), alpha subunit	[more]
AT2G16595.1	1.4e-15	42.99	Translocon-associated protein (TRAP), alpha subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005595	Translocon-associated protein (TRAP), alpha subunit	PFAM	PF03896	TRAP_alpha	coord: 71..176 e-value: 1.3E-10 score: 41.0 coord: 203..274 e-value: 6.5E-8 score: 32.1
None	No IPR available	PANTHER	PTHR12924:SF5	SUBFAMILY NOT NAMED	coord: 67..171
None	No IPR available	PANTHER	PTHR12924:SF5	SUBFAMILY NOT NAMED	coord: 171..273
None	No IPR available	PANTHER	PTHR12924	TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT	coord: 171..273 coord: 67..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G036860.1	CaUC02G036860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane