Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAGGACCCGTGGCTACCTAAAGAGAATACTTTTAAACCTAAATGTACAAACATGGACTTCCATGAGGCAAGAGTAGCTAATTTTATAACTCCTGAGGGTACCTGGAATACCGACCTACTGGCCAAAGCTACCCCACTGAAAGATTCTGAAGTAATAAAAAAAATTCCTCTAAATTTGAGAATCGAAGACAAATTGATTTGGCACTTTGACAGGCTTGGGATGTACTCGGTAAAATCAGGGTATAAATGGTTCCAAAAATCCAAGCTCTGCACTAGTTCTACGAGCGAGAACATTTTAAAAATCCTATAGACTAAGACATGGAAGCTAAACGTCCCCCTCAAGATCGGACACTTTATTTGGCGAGCCCTAAAGAATATCCTCCCAACTAGAACAAACTTACTTAAGAAAGGTATTGAGATCTTACCTTATTGCCCTGTCTATGGGAAGTATTAGGAGATTGTCGATCACACCCTCTTCTCTTGTGAGAGAGCTAAATCAATTCTAAGAAAAGTTCTGGATGAGGATCCAATAACTACAAATTTCAATGGCAGCTTCATCGATGGCATCATCTGGTTTCCGAATGCAAGACCAATAAAATCGAGCTAATAGCCACCTCTTGCTGGGCAATTTGTAATAATCGGAACGACCTAGTGAATGGCAAGGTCCTCCTTCCCCCACACCTCAAAGCTTCCTGGATTATCAGATATTGCGAGACTTTCTGGGATTCTTCAAATTCCTAGATCACTGATAAAGCTTTGATTGTCAAATCTCACGAGGATATCTCCTCGTGGTCTCCTCCTCCACCAGGCTTAGTAAAAATCAACACAGATGCTTCCTGGAATTCCTTTTCCCCCTTAGCGGGTTTGGGCATCGTCATAAGGGAGAGTTGGGGGGCTTTAAAAGCCATCTCTGCCATAAACTCACAGCCCGTCATTGATTGCCCTTCGGCGAAAGCGCTGGCTATAAATGAAGGTCTAATCCTTACCTTATCCCTAAATCTTGGAGACATTATTGTTGAAACCGACTGCTTCCAGGTGATCGACCTAATCAGGGGACTCTCCCACTCTAACACTCATGAAATATCATGTTGGATAGAAGACATTGTAGCTCTAAGTAACAAGTTTAACTCTTGCTCTTTTAGCTCCACTCCCAAAGCGTATAATTCTCTAGCAAATGCAGTGGTCATTGCCTTCTCATTTTTTCGTATTTCTTTGAAAGATTGTAATTGA
mRNA sequence
ATGGTTAAGGACCCGTGGCTACCTAAAGAGAATACTTTTAAACCTAAATGTACAAACATGGACTTCCATGAGGCAAGAGTAGCTAATTTTATAACTCCTGAGGGTACCTGGAATACCGACCTACTGGCCAAAGCTACCCCACTGAAAGATTCTGAACTTCATCGATGGCATCATCTGGTTTCCGAATGCAAGACCAATAAAATCGAGCTAATAGCCACCTCTTGCTGGGCAATTTGTAATAATCGGAACGACCTAGTGAATGGCAAGATCACTGATAAAGCTTTGATTGTCAAATCTCACGAGGATATCTCCTCGTGGTCTCCTCCTCCACCAGGCTTAGTAAAAATCAACACAGATGCTTCCTGGAATTCCTTTTCCCCCTTAGCGGGTTTGGGCATCGTCATAAGGGAGAGTTGGGGGGCTTTAAAAGCCATCTCTGCCATAAACTCACAGCCCGTCATTGATTGCCCTTCGGCGAAAGCGCTGGCTATAAATGAAGGTCTAATCCTTACCTTATCCCTAAATCTTGGAGACATTATTGTTGAAACCGACTGCTTCCAGGTGATCGACCTAATCAGGGGACTCTCCCACTCTAACACTCATGAAATATCATGTTGGATAGAAGACATTGTAGCTCTAAGTAACAAGTTTAACTCTTGCTCTTTTAGCTCCACTCCCAAAGCGTATAATTCTCTAGCAAATGCAGTGGTCATTGCCTTCTCATTTTTTCGTATTTCTTTGAAAGATTGTAATTGA
Coding sequence (CDS)
ATGGTTAAGGACCCGTGGCTACCTAAAGAGAATACTTTTAAACCTAAATGTACAAACATGGACTTCCATGAGGCAAGAGTAGCTAATTTTATAACTCCTGAGGGTACCTGGAATACCGACCTACTGGCCAAAGCTACCCCACTGAAAGATTCTGAACTTCATCGATGGCATCATCTGGTTTCCGAATGCAAGACCAATAAAATCGAGCTAATAGCCACCTCTTGCTGGGCAATTTGTAATAATCGGAACGACCTAGTGAATGGCAAGATCACTGATAAAGCTTTGATTGTCAAATCTCACGAGGATATCTCCTCGTGGTCTCCTCCTCCACCAGGCTTAGTAAAAATCAACACAGATGCTTCCTGGAATTCCTTTTCCCCCTTAGCGGGTTTGGGCATCGTCATAAGGGAGAGTTGGGGGGCTTTAAAAGCCATCTCTGCCATAAACTCACAGCCCGTCATTGATTGCCCTTCGGCGAAAGCGCTGGCTATAAATGAAGGTCTAATCCTTACCTTATCCCTAAATCTTGGAGACATTATTGTTGAAACCGACTGCTTCCAGGTGATCGACCTAATCAGGGGACTCTCCCACTCTAACACTCATGAAATATCATGTTGGATAGAAGACATTGTAGCTCTAAGTAACAAGTTTAACTCTTGCTCTTTTAGCTCCACTCCCAAAGCGTATAATTCTCTAGCAAATGCAGTGGTCATTGCCTTCTCATTTTTTCGTATTTCTTTGAAAGATTGTAATTGA
Protein sequence
MVKDPWLPKENTFKPKCTNMDFHEARVANFITPEGTWNTDLLAKATPLKDSELHRWHHLVSECKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLANAVVIAFSFFRISLKDCN
Homology
BLAST of CaUC02G035350 vs. NCBI nr
Match:
OMO67823.1 (reverse transcriptase [Corchorus capsularis])
HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 62/242 (25.62%), Postives = 115/242 (47.52%), Query Frame = 0
Query: 4 DPWLPKENTFKP-KCTNMDFHEARVANFITPEGTWNTDLLAKATPLKDSE-------LHR 63
DPW+ K +F+P + + RV+ I+ +G WN D+L +D
Sbjct: 1316 DPWINKPPSFRPLSLPEVTMTDMRVSELISEDGRWNVDILDLLFQPEDVNQILSLPLSQT 1375
Query: 64 WHHLVSECKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVK 123
+H +V + + ++ + A ND+ W PPP + K
Sbjct: 1376 FHQIVVKMIQEQPCFLSPTTRAYPVQTNDI--------------------WHPPPASVYK 1435
Query: 124 INTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLN 183
+NTD ++N S A LG+V+R+S G ++ + V D ++ LAI+ GL++
Sbjct: 1436 LNTDTTYNVDSHEAKLGVVLRDSTGQIRFSACKRISFVADVMQSEILAIHYGLLVAQLNG 1495
Query: 184 LGDIIVETDCFQVI-DLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLAN 237
+ ++V++DC Q I ++ +G ++T + +C IE+I ++ F+ CSF + N LA+
Sbjct: 1496 IEKLVVKSDCLQAIREIPKG--SASTWDSACLIEEIQTFASSFSLCSFKHVKRNANVLAH 1535
BLAST of CaUC02G035350 vs. NCBI nr
Match:
XP_024046732.1 (uncharacterized protein LOC112101057 [Citrus clementina])
HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 70/242 (28.93%), Postives = 111/242 (45.87%), Query Frame = 0
Query: 22 FHEARVANFITPEGTWNTDLLAKATP--LKDSELHRWHHLVSECKTNKIELIATSCWAIC 81
F E +VA + W LA +++ L L+ + ++E +A W I
Sbjct: 127 FMECKVARKV-----WKYSYLASEMQEVVREGILSVMQSLIKKMSMREVEFVAVVWWEIW 186
Query: 82 NNRNDLV--NGKITDKALIVKSH-------------------EDIS---SWSPPPPGLVK 141
+ RN L+ ++ +LI K+ ED+S W PPP G K
Sbjct: 187 HARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTSKRSEDVSKQDQWCPPPVGFYK 246
Query: 142 INTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVID-CPSAKALAINEGLILTLSL 201
+N DA+ ++ L GLG+VIR G + ++A+ S D +A+A A+ GL + L
Sbjct: 247 VNVDAAVHTEQQLTGLGVVIRNPQGQV-IVTAVKSTKFQDNVTAAEAEAVKWGLEIALEA 306
Query: 202 NLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLAN 237
L +I+ETDC +V +L + S+ EI I DI + KF S S P+ NS A+
Sbjct: 307 RLAAVIIETDCIEVANLANSKT-SSRKEIVWTISDIHSYKEKFQSLSIQHVPRCCNSCAH 361
BLAST of CaUC02G035350 vs. NCBI nr
Match:
XP_024033146.1 (uncharacterized protein LOC112095446 [Citrus clementina])
HSP 1 Score: 86.7 bits (213), Expect = 3.2e-13
Identity = 62/203 (30.54%), Postives = 98/203 (48.28%), Query Frame = 0
Query: 59 LVSECKTNKIELIATSCWAICNNRNDLV--NGKITDKALIVKSH---------------- 118
L+ + ++E +A W I + RN L+ ++ +LI K+
Sbjct: 34 LIKKMSMREVEFVAVVWWEIWHARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTS 93
Query: 119 ---EDIS---SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVI 178
ED+S W PPP G K+N DA+ ++ L GLG+VIR G + ++A+ S
Sbjct: 94 KRSEDVSKQDQWFPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQI-IVAAVKSTKFQ 153
Query: 179 D-CPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVAL 237
D +A+A A+ GL + L L +I+ETDC +V +L + S+ EI I DI +
Sbjct: 154 DNVTAAEAEAVKWGLEIALEARLATVIIETDCIEVANLANSKT-SSRKEIMWTISDIHSY 213
BLAST of CaUC02G035350 vs. NCBI nr
Match:
XP_015385025.1 (uncharacterized protein LOC107176703 [Citrus sinensis])
HSP 1 Score: 86.7 bits (213), Expect = 3.2e-13
Identity = 62/203 (30.54%), Postives = 98/203 (48.28%), Query Frame = 0
Query: 59 LVSECKTNKIELIATSCWAICNNRNDLV--NGKITDKALIVKSH---------------- 118
L+ + ++E +A W + + RN L+ ++ +LI K+
Sbjct: 34 LIKKMSMREVEFVAVVWWEVWHARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTS 93
Query: 119 ---EDIS---SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVI 178
ED+S W PPP G K+N DA+ ++ L GLG+VIR G + ++AI S
Sbjct: 94 KRSEDVSKQDQWCPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQI-IVAAIKSTKFQ 153
Query: 179 D-CPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVAL 237
D +A+A A+ GL + L L +I+ETDC +V +L + S+ EI I DI +
Sbjct: 154 DNVTAAEAEAVKWGLEIALEARLAAVIIETDCIEVANLANSKT-SSKKEIMWTISDIHSY 213
BLAST of CaUC02G035350 vs. NCBI nr
Match:
XP_015388012.1 (uncharacterized protein LOC107177940 [Citrus sinensis])
HSP 1 Score: 83.2 bits (204), Expect = 3.5e-12
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 0
Query: 49 KDSELHRWHHLVSECKTNKIELIATSCWAICNNRNDLV-NGKITD--------KALIV-- 108
+D L H L+ + ++I+ +A+ WA + RN L+ GK D KA++V
Sbjct: 10 RDDMLSTMHSLMRKGAKSEIDYVASIWWATWHARNKLLFEGKKPDPRETVAKAKAIVVAY 69
Query: 109 -----KSHEDISS--------WSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWG--AL 168
K + SS W+PPP +KIN DA+ ++ S +AGLG VIR S G +
Sbjct: 70 QAMQFKEQDSPSSIKEKEAQRWNPPPSSKLKINVDAAVHAESQMAGLGAVIRNSQGQVVV 129
Query: 169 KAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHE 228
A+ +IN Q D A+A A+ GL + + ++IVETDC V DL SN E
Sbjct: 130 AAVKSINFQG--DVSIAEAKAVQWGLEVASKASFTNVIVETDCSMVADLANN-KVSNKTE 189
Query: 229 ISCWIEDIVALSNKFNSCSFSSTPKAYNSLA 234
I I +I + F S F P+ N+ A
Sbjct: 190 IWWTIAEIQSSRQDFQSIDFQHVPRQCNTSA 217
BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match:
A0A1R3HC77 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 5.3e-14
Identity = 62/242 (25.62%), Postives = 115/242 (47.52%), Query Frame = 0
Query: 4 DPWLPKENTFKP-KCTNMDFHEARVANFITPEGTWNTDLLAKATPLKDSE-------LHR 63
DPW+ K +F+P + + RV+ I+ +G WN D+L +D
Sbjct: 1316 DPWINKPPSFRPLSLPEVTMTDMRVSELISEDGRWNVDILDLLFQPEDVNQILSLPLSQT 1375
Query: 64 WHHLVSECKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVK 123
+H +V + + ++ + A ND+ W PPP + K
Sbjct: 1376 FHQIVVKMIQEQPCFLSPTTRAYPVQTNDI--------------------WHPPPASVYK 1435
Query: 124 INTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLN 183
+NTD ++N S A LG+V+R+S G ++ + V D ++ LAI+ GL++
Sbjct: 1436 LNTDTTYNVDSHEAKLGVVLRDSTGQIRFSACKRISFVADVMQSEILAIHYGLLVAQLNG 1495
Query: 184 LGDIIVETDCFQVI-DLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLAN 237
+ ++V++DC Q I ++ +G ++T + +C IE+I ++ F+ CSF + N LA+
Sbjct: 1496 IEKLVVKSDCLQAIREIPKG--SASTWDSACLIEEIQTFASSFSLCSFKHVKRNANVLAH 1535
BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match:
A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 59/190 (31.05%), Postives = 97/190 (51.05%), Query Frame = 0
Query: 65 TNKIELIATSCWAICNNRNDLVNGKITDKALI-------------VKSHED-------IS 124
T+++ L +CWA+ N+R+ L+N K +ALI +K H ++
Sbjct: 6 TSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIPRVN 65
Query: 125 SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCP-SAKALA 184
W PP G+VK+NTDA+ + +G+G+++RE G + + A+ ++ P AK LA
Sbjct: 66 EWRPPLGGVVKMNTDAAVSEEG--SGVGVLLRE--GNAEIVGAMVDFHMVKTPLLAKILA 125
Query: 185 INEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFS 234
I EGL L L + ++VETD + ++LI S +S W+EDI A + F F
Sbjct: 126 IREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVS-WVEDIRAFARDFQEICFQ 185
BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match:
A0A803P8L6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 7.2e-11
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 0
Query: 105 SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAI 164
SWSPPP G INTDAS P GLG+VIR+ GA+ I + A++LAI
Sbjct: 823 SWSPPPSGTFMINTDASLVVGQPGCGLGMVIRDHLGAVVVAETIFIPGCLSVNMAESLAI 882
Query: 165 NEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSS 224
GL L +L +I + +DC V + G +HS T + ++D + FN SF
Sbjct: 883 RSGLKLADCWSLSNICISSDCQSVSHALNGDNHSIT-DWGLMVKDCIKAKENFNLVSFLF 942
Query: 225 TPKAYNSLANAVVIAFSFFRIS 247
+P+ N +AN + F+ S
Sbjct: 943 SPRQCNKVANCLASWARLFKTS 963
BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match:
A0A803Q8X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 7.2e-11
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 0
Query: 105 SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAI 164
SWSPPP G IN D S P GLG+VIR+ GA+ I + A++LAI
Sbjct: 954 SWSPPPSGTFMINADVSLIVGQPGCGLGVVIRDHLGAVVVAETIFIPSCLSFNMAESLAI 1013
Query: 165 NEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSS 224
GL L +L I + +DC VI + G +HS T + ++D + FN SF
Sbjct: 1014 RSGLKLADRWSLSTICISSDCQSVIHALNGDNHSIT-DWGLVVKDCIKAKENFNFVSFLF 1073
Query: 225 TPKAYNSLANAVVIAFSFFRIS 247
+P+ +N +AN + F+ S
Sbjct: 1074 SPRQWNKVANCLATWARLFKTS 1094
BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match:
A0A0A9VCQ3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 9.4e-11
Identity = 55/194 (28.35%), Postives = 90/194 (46.39%), Query Frame = 0
Query: 63 CKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSH-----ED--------------I 122
C + + L A CW++ RN+ +G + + H ED +
Sbjct: 144 CSSEEAALFACCCWSLWTGRNNCRHGDTSWSPYALALHVTKMVEDMLQIHCKPEMQLCVV 203
Query: 123 SSWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALA 182
W PP G++K+NTDA++ + G+VIR+S+G K +A + D +A+ALA
Sbjct: 204 PRWQPPENGIMKVNTDAAFYPDNMNGSSGVVIRDSYGNFKQAAAHWYSNLADVLTAEALA 263
Query: 183 INEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFS 238
+ +GLIL + VE+D V+ L++ + + S W D+ LS KF S SF+
Sbjct: 264 VRDGLILAAEAGNRHVTVESDNSSVVKLMKTGEGALSSIASIW-HDVKELSRKFISVSFN 323
BLAST of CaUC02G035350 vs. TAIR 10
Match:
AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 55.5 bits (132), Expect = 7.4e-08
Identity = 60/238 (25.21%), Postives = 97/238 (40.76%), Query Frame = 0
Query: 33 PEGTWNTDLLAKATPLKDSELHRWHHLVSECKTNKI-ELIATSCWAICNNRNDLV-NGKI 92
PEG W L A + + E V K KI L+ W + +RN+L+ GK
Sbjct: 45 PEGEWTDSLYANLYWVLNLE-------VEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKE 104
Query: 93 TDKALIV-KSHEDISSWS-----------------------PPPPGLVKINTDASWNSFS 152
D ++ ++ ED WS PP VK NTDA+W +
Sbjct: 105 YDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCNTDATWQLEN 164
Query: 153 PLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCF 212
P G+G ++R G + + A + A+ A+ ++ N II E+D
Sbjct: 165 PRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQ 224
Query: 213 QVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLANAVV---IAFS 242
+++L+ T + + +EDI L + F F TP+ N +A+ + I+FS
Sbjct: 225 ALVNLLNSDDFWPTLQPA--LEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFS 273
BLAST of CaUC02G035350 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 52.0 bits (123), Expect = 8.1e-07
Identity = 52/200 (26.00%), Postives = 83/200 (41.50%), Query Frame = 0
Query: 69 ELIATSCWAICNNRNDLV-NGKITDKALIVKSHED------------------------I 128
+L+ W + NRN+LV G+ + +++ ED
Sbjct: 358 QLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSC 417
Query: 129 SSWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALA 188
W PPP VK NTDA+WN + G+G V+R G +K + A + P + L
Sbjct: 418 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGA-RALPKLKSVLEAELE 477
Query: 189 INEGLILTLS-LNLGDIIVETDCFQVIDLIRGLSHSNTHEISCW------IEDIVALSNK 237
+L+LS +I E+D +I+++ N EI W I+D+ L ++
Sbjct: 478 AMRWAVLSLSRFQYNYVIFESDSQVLIEIL------NNDEI--WPSLKPTIQDLQRLLSQ 537
BLAST of CaUC02G035350 vs. TAIR 10
Match:
AT2G02650.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 46.2 bits (108), Expect = 4.5e-05
Identity = 46/162 (28.40%), Postives = 63/162 (38.89%), Query Frame = 0
Query: 76 WAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVKINTDASWNSFSPLAGLGIVI 135
W N + N + I S D S W+PPP G VK N D+ + SP G I
Sbjct: 177 WLNANETTENTNVHVATNP-IQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTI 236
Query: 136 RESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLI-RG 195
RE G + Q A+AL L + + L + E+D ++ LI G
Sbjct: 237 RECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNG 296
Query: 196 LSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLANAV 237
HS + I DI K CS + NS A+A+
Sbjct: 297 EDHS---LLGTLIYDIRHWMLKLPYCSLEFVNRERNSAADAL 334
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1R3HC77 | 5.3e-14 | 25.62 | Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV... | [more] |
A0A6J1DZK3 | 3.8e-12 | 31.05 | uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A803P8L6 | 7.2e-11 | 35.21 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q8X4 | 7.2e-11 | 34.51 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A0A9VCQ3 | 9.4e-11 | 28.35 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G34320.1 | 7.4e-08 | 25.21 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |
AT4G29090.1 | 8.1e-07 | 26.00 | Ribonuclease H-like superfamily protein | [more] |
AT2G02650.1 | 4.5e-05 | 28.40 | Ribonuclease H-like superfamily protein | [more] |