CaUC02G035350 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G035350
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRibonuclease H-like superfamily protein
LocationCiama_Chr02: 14726208 .. 14727442 (+)
RNA-Seq ExpressionCaUC02G035350
SyntenyCaUC02G035350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAGGACCCGTGGCTACCTAAAGAGAATACTTTTAAACCTAAATGTACAAACATGGACTTCCATGAGGCAAGAGTAGCTAATTTTATAACTCCTGAGGGTACCTGGAATACCGACCTACTGGCCAAAGCTACCCCACTGAAAGATTCTGAAGTAATAAAAAAAATTCCTCTAAATTTGAGAATCGAAGACAAATTGATTTGGCACTTTGACAGGCTTGGGATGTACTCGGTAAAATCAGGGTATAAATGGTTCCAAAAATCCAAGCTCTGCACTAGTTCTACGAGCGAGAACATTTTAAAAATCCTATAGACTAAGACATGGAAGCTAAACGTCCCCCTCAAGATCGGACACTTTATTTGGCGAGCCCTAAAGAATATCCTCCCAACTAGAACAAACTTACTTAAGAAAGGTATTGAGATCTTACCTTATTGCCCTGTCTATGGGAAGTATTAGGAGATTGTCGATCACACCCTCTTCTCTTGTGAGAGAGCTAAATCAATTCTAAGAAAAGTTCTGGATGAGGATCCAATAACTACAAATTTCAATGGCAGCTTCATCGATGGCATCATCTGGTTTCCGAATGCAAGACCAATAAAATCGAGCTAATAGCCACCTCTTGCTGGGCAATTTGTAATAATCGGAACGACCTAGTGAATGGCAAGGTCCTCCTTCCCCCACACCTCAAAGCTTCCTGGATTATCAGATATTGCGAGACTTTCTGGGATTCTTCAAATTCCTAGATCACTGATAAAGCTTTGATTGTCAAATCTCACGAGGATATCTCCTCGTGGTCTCCTCCTCCACCAGGCTTAGTAAAAATCAACACAGATGCTTCCTGGAATTCCTTTTCCCCCTTAGCGGGTTTGGGCATCGTCATAAGGGAGAGTTGGGGGGCTTTAAAAGCCATCTCTGCCATAAACTCACAGCCCGTCATTGATTGCCCTTCGGCGAAAGCGCTGGCTATAAATGAAGGTCTAATCCTTACCTTATCCCTAAATCTTGGAGACATTATTGTTGAAACCGACTGCTTCCAGGTGATCGACCTAATCAGGGGACTCTCCCACTCTAACACTCATGAAATATCATGTTGGATAGAAGACATTGTAGCTCTAAGTAACAAGTTTAACTCTTGCTCTTTTAGCTCCACTCCCAAAGCGTATAATTCTCTAGCAAATGCAGTGGTCATTGCCTTCTCATTTTTTCGTATTTCTTTGAAAGATTGTAATTGA

mRNA sequence

ATGGTTAAGGACCCGTGGCTACCTAAAGAGAATACTTTTAAACCTAAATGTACAAACATGGACTTCCATGAGGCAAGAGTAGCTAATTTTATAACTCCTGAGGGTACCTGGAATACCGACCTACTGGCCAAAGCTACCCCACTGAAAGATTCTGAACTTCATCGATGGCATCATCTGGTTTCCGAATGCAAGACCAATAAAATCGAGCTAATAGCCACCTCTTGCTGGGCAATTTGTAATAATCGGAACGACCTAGTGAATGGCAAGATCACTGATAAAGCTTTGATTGTCAAATCTCACGAGGATATCTCCTCGTGGTCTCCTCCTCCACCAGGCTTAGTAAAAATCAACACAGATGCTTCCTGGAATTCCTTTTCCCCCTTAGCGGGTTTGGGCATCGTCATAAGGGAGAGTTGGGGGGCTTTAAAAGCCATCTCTGCCATAAACTCACAGCCCGTCATTGATTGCCCTTCGGCGAAAGCGCTGGCTATAAATGAAGGTCTAATCCTTACCTTATCCCTAAATCTTGGAGACATTATTGTTGAAACCGACTGCTTCCAGGTGATCGACCTAATCAGGGGACTCTCCCACTCTAACACTCATGAAATATCATGTTGGATAGAAGACATTGTAGCTCTAAGTAACAAGTTTAACTCTTGCTCTTTTAGCTCCACTCCCAAAGCGTATAATTCTCTAGCAAATGCAGTGGTCATTGCCTTCTCATTTTTTCGTATTTCTTTGAAAGATTGTAATTGA

Coding sequence (CDS)

ATGGTTAAGGACCCGTGGCTACCTAAAGAGAATACTTTTAAACCTAAATGTACAAACATGGACTTCCATGAGGCAAGAGTAGCTAATTTTATAACTCCTGAGGGTACCTGGAATACCGACCTACTGGCCAAAGCTACCCCACTGAAAGATTCTGAACTTCATCGATGGCATCATCTGGTTTCCGAATGCAAGACCAATAAAATCGAGCTAATAGCCACCTCTTGCTGGGCAATTTGTAATAATCGGAACGACCTAGTGAATGGCAAGATCACTGATAAAGCTTTGATTGTCAAATCTCACGAGGATATCTCCTCGTGGTCTCCTCCTCCACCAGGCTTAGTAAAAATCAACACAGATGCTTCCTGGAATTCCTTTTCCCCCTTAGCGGGTTTGGGCATCGTCATAAGGGAGAGTTGGGGGGCTTTAAAAGCCATCTCTGCCATAAACTCACAGCCCGTCATTGATTGCCCTTCGGCGAAAGCGCTGGCTATAAATGAAGGTCTAATCCTTACCTTATCCCTAAATCTTGGAGACATTATTGTTGAAACCGACTGCTTCCAGGTGATCGACCTAATCAGGGGACTCTCCCACTCTAACACTCATGAAATATCATGTTGGATAGAAGACATTGTAGCTCTAAGTAACAAGTTTAACTCTTGCTCTTTTAGCTCCACTCCCAAAGCGTATAATTCTCTAGCAAATGCAGTGGTCATTGCCTTCTCATTTTTTCGTATTTCTTTGAAAGATTGTAATTGA

Protein sequence

MVKDPWLPKENTFKPKCTNMDFHEARVANFITPEGTWNTDLLAKATPLKDSELHRWHHLVSECKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLANAVVIAFSFFRISLKDCN
Homology
BLAST of CaUC02G035350 vs. NCBI nr
Match: OMO67823.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 62/242 (25.62%), Postives = 115/242 (47.52%), Query Frame = 0

Query: 4    DPWLPKENTFKP-KCTNMDFHEARVANFITPEGTWNTDLLAKATPLKDSE-------LHR 63
            DPW+ K  +F+P     +   + RV+  I+ +G WN D+L      +D            
Sbjct: 1316 DPWINKPPSFRPLSLPEVTMTDMRVSELISEDGRWNVDILDLLFQPEDVNQILSLPLSQT 1375

Query: 64   WHHLVSECKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVK 123
            +H +V +    +   ++ +  A     ND+                    W PPP  + K
Sbjct: 1376 FHQIVVKMIQEQPCFLSPTTRAYPVQTNDI--------------------WHPPPASVYK 1435

Query: 124  INTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLN 183
            +NTD ++N  S  A LG+V+R+S G ++  +      V D   ++ LAI+ GL++     
Sbjct: 1436 LNTDTTYNVDSHEAKLGVVLRDSTGQIRFSACKRISFVADVMQSEILAIHYGLLVAQLNG 1495

Query: 184  LGDIIVETDCFQVI-DLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLAN 237
            +  ++V++DC Q I ++ +G   ++T + +C IE+I   ++ F+ CSF    +  N LA+
Sbjct: 1496 IEKLVVKSDCLQAIREIPKG--SASTWDSACLIEEIQTFASSFSLCSFKHVKRNANVLAH 1535

BLAST of CaUC02G035350 vs. NCBI nr
Match: XP_024046732.1 (uncharacterized protein LOC112101057 [Citrus clementina])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 70/242 (28.93%), Postives = 111/242 (45.87%), Query Frame = 0

Query: 22  FHEARVANFITPEGTWNTDLLAKATP--LKDSELHRWHHLVSECKTNKIELIATSCWAIC 81
           F E +VA  +     W    LA      +++  L     L+ +    ++E +A   W I 
Sbjct: 127 FMECKVARKV-----WKYSYLASEMQEVVREGILSVMQSLIKKMSMREVEFVAVVWWEIW 186

Query: 82  NNRNDLV--NGKITDKALIVKSH-------------------EDIS---SWSPPPPGLVK 141
           + RN L+    ++   +LI K+                    ED+S    W PPP G  K
Sbjct: 187 HARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTSKRSEDVSKQDQWCPPPVGFYK 246

Query: 142 INTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVID-CPSAKALAINEGLILTLSL 201
           +N DA+ ++   L GLG+VIR   G +  ++A+ S    D   +A+A A+  GL + L  
Sbjct: 247 VNVDAAVHTEQQLTGLGVVIRNPQGQV-IVTAVKSTKFQDNVTAAEAEAVKWGLEIALEA 306

Query: 202 NLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLAN 237
            L  +I+ETDC +V +L    + S+  EI   I DI +   KF S S    P+  NS A+
Sbjct: 307 RLAAVIIETDCIEVANLANSKT-SSRKEIVWTISDIHSYKEKFQSLSIQHVPRCCNSCAH 361

BLAST of CaUC02G035350 vs. NCBI nr
Match: XP_024033146.1 (uncharacterized protein LOC112095446 [Citrus clementina])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-13
Identity = 62/203 (30.54%), Postives = 98/203 (48.28%), Query Frame = 0

Query: 59  LVSECKTNKIELIATSCWAICNNRNDLV--NGKITDKALIVKSH---------------- 118
           L+ +    ++E +A   W I + RN L+    ++   +LI K+                 
Sbjct: 34  LIKKMSMREVEFVAVVWWEIWHARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTS 93

Query: 119 ---EDIS---SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVI 178
              ED+S    W PPP G  K+N DA+ ++   L GLG+VIR   G +  ++A+ S    
Sbjct: 94  KRSEDVSKQDQWFPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQI-IVAAVKSTKFQ 153

Query: 179 D-CPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVAL 237
           D   +A+A A+  GL + L   L  +I+ETDC +V +L    + S+  EI   I DI + 
Sbjct: 154 DNVTAAEAEAVKWGLEIALEARLATVIIETDCIEVANLANSKT-SSRKEIMWTISDIHSY 213

BLAST of CaUC02G035350 vs. NCBI nr
Match: XP_015385025.1 (uncharacterized protein LOC107176703 [Citrus sinensis])

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-13
Identity = 62/203 (30.54%), Postives = 98/203 (48.28%), Query Frame = 0

Query: 59  LVSECKTNKIELIATSCWAICNNRNDLV--NGKITDKALIVKSH---------------- 118
           L+ +    ++E +A   W + + RN L+    ++   +LI K+                 
Sbjct: 34  LIKKMSMREVEFVAVVWWEVWHARNKLIFEGKRVNPMSLIAKAQAAVEAYQRVHGKEQTS 93

Query: 119 ---EDIS---SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVI 178
              ED+S    W PPP G  K+N DA+ ++   L GLG+VIR   G +  ++AI S    
Sbjct: 94  KRSEDVSKQDQWCPPPVGFYKVNVDAAVHTEQQLTGLGVVIRNPQGQI-IVAAIKSTKFQ 153

Query: 179 D-CPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVAL 237
           D   +A+A A+  GL + L   L  +I+ETDC +V +L    + S+  EI   I DI + 
Sbjct: 154 DNVTAAEAEAVKWGLEIALEARLAAVIIETDCIEVANLANSKT-SSKKEIMWTISDIHSY 213

BLAST of CaUC02G035350 vs. NCBI nr
Match: XP_015388012.1 (uncharacterized protein LOC107177940 [Citrus sinensis])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-12
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 0

Query: 49  KDSELHRWHHLVSECKTNKIELIATSCWAICNNRNDLV-NGKITD--------KALIV-- 108
           +D  L   H L+ +   ++I+ +A+  WA  + RN L+  GK  D        KA++V  
Sbjct: 10  RDDMLSTMHSLMRKGAKSEIDYVASIWWATWHARNKLLFEGKKPDPRETVAKAKAIVVAY 69

Query: 109 -----KSHEDISS--------WSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWG--AL 168
                K  +  SS        W+PPP   +KIN DA+ ++ S +AGLG VIR S G   +
Sbjct: 70  QAMQFKEQDSPSSIKEKEAQRWNPPPSSKLKINVDAAVHAESQMAGLGAVIRNSQGQVVV 129

Query: 169 KAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHE 228
            A+ +IN Q   D   A+A A+  GL +    +  ++IVETDC  V DL      SN  E
Sbjct: 130 AAVKSINFQG--DVSIAEAKAVQWGLEVASKASFTNVIVETDCSMVADLANN-KVSNKTE 189

Query: 229 ISCWIEDIVALSNKFNSCSFSSTPKAYNSLA 234
           I   I +I +    F S  F   P+  N+ A
Sbjct: 190 IWWTIAEIQSSRQDFQSIDFQHVPRQCNTSA 217

BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match: A0A1R3HC77 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-14
Identity = 62/242 (25.62%), Postives = 115/242 (47.52%), Query Frame = 0

Query: 4    DPWLPKENTFKP-KCTNMDFHEARVANFITPEGTWNTDLLAKATPLKDSE-------LHR 63
            DPW+ K  +F+P     +   + RV+  I+ +G WN D+L      +D            
Sbjct: 1316 DPWINKPPSFRPLSLPEVTMTDMRVSELISEDGRWNVDILDLLFQPEDVNQILSLPLSQT 1375

Query: 64   WHHLVSECKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVK 123
            +H +V +    +   ++ +  A     ND+                    W PPP  + K
Sbjct: 1376 FHQIVVKMIQEQPCFLSPTTRAYPVQTNDI--------------------WHPPPASVYK 1435

Query: 124  INTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLN 183
            +NTD ++N  S  A LG+V+R+S G ++  +      V D   ++ LAI+ GL++     
Sbjct: 1436 LNTDTTYNVDSHEAKLGVVLRDSTGQIRFSACKRISFVADVMQSEILAIHYGLLVAQLNG 1495

Query: 184  LGDIIVETDCFQVI-DLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLAN 237
            +  ++V++DC Q I ++ +G   ++T + +C IE+I   ++ F+ CSF    +  N LA+
Sbjct: 1496 IEKLVVKSDCLQAIREIPKG--SASTWDSACLIEEIQTFASSFSLCSFKHVKRNANVLAH 1535

BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match: A0A6J1DZK3 (uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024968 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 59/190 (31.05%), Postives = 97/190 (51.05%), Query Frame = 0

Query: 65  TNKIELIATSCWAICNNRNDLVNGKITDKALI-------------VKSHED-------IS 124
           T+++ L   +CWA+ N+R+ L+N K   +ALI             +K H         ++
Sbjct: 6   TSELRLTGITCWALWNDRDALINKKKIPEALIKVEWILKYAEEVRMKYHNGMKRRIPRVN 65

Query: 125 SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCP-SAKALA 184
            W PP  G+VK+NTDA+ +     +G+G+++RE  G  + + A+    ++  P  AK LA
Sbjct: 66  EWRPPLGGVVKMNTDAAVSEEG--SGVGVLLRE--GNAEIVGAMVDFHMVKTPLLAKILA 125

Query: 185 INEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFS 234
           I EGL L   L +  ++VETD  + ++LI   S      +S W+EDI A +  F    F 
Sbjct: 126 IREGLSLATRLGVHRVVVETDSLEALNLIGDKSPWKGEAVS-WVEDIRAFARDFQEICFQ 185

BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match: A0A803P8L6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-11
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 0

Query: 105 SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAI 164
           SWSPPP G   INTDAS     P  GLG+VIR+  GA+     I     +    A++LAI
Sbjct: 823 SWSPPPSGTFMINTDASLVVGQPGCGLGMVIRDHLGAVVVAETIFIPGCLSVNMAESLAI 882

Query: 165 NEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSS 224
             GL L    +L +I + +DC  V   + G +HS T +    ++D +     FN  SF  
Sbjct: 883 RSGLKLADCWSLSNICISSDCQSVSHALNGDNHSIT-DWGLMVKDCIKAKENFNLVSFLF 942

Query: 225 TPKAYNSLANAVVIAFSFFRIS 247
           +P+  N +AN +      F+ S
Sbjct: 943 SPRQCNKVANCLASWARLFKTS 963

BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match: A0A803Q8X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-11
Identity = 49/142 (34.51%), Postives = 70/142 (49.30%), Query Frame = 0

Query: 105  SWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAI 164
            SWSPPP G   IN D S     P  GLG+VIR+  GA+     I     +    A++LAI
Sbjct: 954  SWSPPPSGTFMINADVSLIVGQPGCGLGVVIRDHLGAVVVAETIFIPSCLSFNMAESLAI 1013

Query: 165  NEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSS 224
              GL L    +L  I + +DC  VI  + G +HS T +    ++D +     FN  SF  
Sbjct: 1014 RSGLKLADRWSLSTICISSDCQSVIHALNGDNHSIT-DWGLVVKDCIKAKENFNFVSFLF 1073

Query: 225  TPKAYNSLANAVVIAFSFFRIS 247
            +P+ +N +AN +      F+ S
Sbjct: 1074 SPRQWNKVANCLATWARLFKTS 1094

BLAST of CaUC02G035350 vs. ExPASy TrEMBL
Match: A0A0A9VCQ3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-11
Identity = 55/194 (28.35%), Postives = 90/194 (46.39%), Query Frame = 0

Query: 63  CKTNKIELIATSCWAICNNRNDLVNGKITDKALIVKSH-----ED--------------I 122
           C + +  L A  CW++   RN+  +G  +     +  H     ED              +
Sbjct: 144 CSSEEAALFACCCWSLWTGRNNCRHGDTSWSPYALALHVTKMVEDMLQIHCKPEMQLCVV 203

Query: 123 SSWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALA 182
             W PP  G++K+NTDA++   +     G+VIR+S+G  K  +A     + D  +A+ALA
Sbjct: 204 PRWQPPENGIMKVNTDAAFYPDNMNGSSGVVIRDSYGNFKQAAAHWYSNLADVLTAEALA 263

Query: 183 INEGLILTLSLNLGDIIVETDCFQVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFS 238
           + +GLIL        + VE+D   V+ L++    + +   S W  D+  LS KF S SF+
Sbjct: 264 VRDGLILAAEAGNRHVTVESDNSSVVKLMKTGEGALSSIASIW-HDVKELSRKFISVSFN 323

BLAST of CaUC02G035350 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 7.4e-08
Identity = 60/238 (25.21%), Postives = 97/238 (40.76%), Query Frame = 0

Query: 33  PEGTWNTDLLAKATPLKDSELHRWHHLVSECKTNKI-ELIATSCWAICNNRNDLV-NGKI 92
           PEG W   L A    + + E       V   K  KI  L+    W +  +RN+L+  GK 
Sbjct: 45  PEGEWTDSLYANLYWVLNLE-------VEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKE 104

Query: 93  TDKALIV-KSHEDISSWS-----------------------PPPPGLVKINTDASWNSFS 152
            D   ++ ++ ED   WS                        PP   VK NTDA+W   +
Sbjct: 105 YDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCNTDATWQLEN 164

Query: 153 PLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCF 212
           P  G+G ++R   G +  + A       +   A+  A+   ++     N   II E+D  
Sbjct: 165 PRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQ 224

Query: 213 QVIDLIRGLSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLANAVV---IAFS 242
            +++L+       T + +  +EDI  L + F    F  TP+  N +A+ +    I+FS
Sbjct: 225 ALVNLLNSDDFWPTLQPA--LEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFS 273

BLAST of CaUC02G035350 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 8.1e-07
Identity = 52/200 (26.00%), Postives = 83/200 (41.50%), Query Frame = 0

Query: 69  ELIATSCWAICNNRNDLV-NGKITDKALIVKSHED------------------------I 128
           +L+    W +  NRN+LV  G+  +   +++  ED                         
Sbjct: 358 QLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSC 417

Query: 129 SSWSPPPPGLVKINTDASWNSFSPLAGLGIVIRESWGALKAISAINSQPVIDCPSAKALA 188
             W PPP   VK NTDA+WN  +   G+G V+R   G +K + A  + P +       L 
Sbjct: 418 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGA-RALPKLKSVLEAELE 477

Query: 189 INEGLILTLS-LNLGDIIVETDCFQVIDLIRGLSHSNTHEISCW------IEDIVALSNK 237
                +L+LS      +I E+D   +I+++      N  EI  W      I+D+  L ++
Sbjct: 478 AMRWAVLSLSRFQYNYVIFESDSQVLIEIL------NNDEI--WPSLKPTIQDLQRLLSQ 537

BLAST of CaUC02G035350 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-05
Identity = 46/162 (28.40%), Postives = 63/162 (38.89%), Query Frame = 0

Query: 76  WAICNNRNDLVNGKITDKALIVKSHEDISSWSPPPPGLVKINTDASWNSFSPLAGLGIVI 135
           W   N   +  N  +     I  S  D S W+PPP G VK N D+ +   SP    G  I
Sbjct: 177 WLNANETTENTNVHVATNP-IQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTI 236

Query: 136 RESWGALKAISAINSQPVIDCPSAKALAINEGLILTLSLNLGDIIVETDCFQVIDLI-RG 195
           RE  G +        Q       A+AL     L +  +  L  +  E+D   ++ LI  G
Sbjct: 237 RECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNG 296

Query: 196 LSHSNTHEISCWIEDIVALSNKFNSCSFSSTPKAYNSLANAV 237
             HS    +   I DI     K   CS     +  NS A+A+
Sbjct: 297 EDHS---LLGTLIYDIRHWMLKLPYCSLEFVNRERNSAADAL 334

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
OMO67823.11.1e-1325.62reverse transcriptase [Corchorus capsularis][more]
XP_024046732.11.1e-1328.93uncharacterized protein LOC112101057 [Citrus clementina][more]
XP_024033146.13.2e-1330.54uncharacterized protein LOC112095446 [Citrus clementina][more]
XP_015385025.13.2e-1330.54uncharacterized protein LOC107176703 [Citrus sinensis][more]
XP_015388012.13.5e-1233.18uncharacterized protein LOC107177940 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1R3HC775.3e-1425.62Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_20291 PE=4 SV... [more]
A0A6J1DZK33.8e-1231.05uncharacterized protein LOC111024968 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803P8L67.2e-1135.21Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q8X47.2e-1134.51Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A0A9VCQ39.4e-1128.35Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G34320.17.4e-0825.21Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.18.1e-0726.00Ribonuclease H-like superfamily protein [more]
AT2G02650.14.5e-0528.40Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 117..236
e-value: 6.3E-19
score: 68.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 112..239
e-value: 1.8E-9
score: 39.7
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 105..234
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 105..234
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 116..235
e-value: 7.12281E-17
score: 72.3468
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 113..235

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G035350.1CaUC02G035350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity