CaUC02G035020 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G035020
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Ciama_Chr02: 13537031 .. 13537363 (+)
RNA-Seq Expression	CaUC02G035020
Synteny	CaUC02G035020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATATCACCAAACCGATCAAGAATACACCTAAAAAGGATGGCACCAGTAGTGATACCTCCAAGCTTGTAGTTGTTGATGCTAGTCAAGACACCACCGAAGAAGTTGCTAAGTTTATTGAACGCTTAGAGGATTGGGATAGAAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTCTATCCTTGCCATACATACTCAATTTGATGCATTTGACTCTGCTAAAGAACTTTGGGATTTTCTAGCTACACGCTTTCAATCTATTGGTCTTGCTCATTATTATCAGCTACATGCCACTCTTGTTAGTTTTAATCAGGAAGTTGGGTAG

mRNA sequence

ATGGGAGATATCACCAAACCGATCAAGAATACACCTAAAAAGGATGGCACCAGTAGTGATACCTCCAAGCTTGTAGTTGTTGATGCTAGTCAAGACACCACCGAAGAAGTTGCTAAGTTTATTGAACGCTTAGAGGATTGGGATAGAAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTCTATCCTTGCCATACATACTCAATTTGATGCATTTGACTCTGCTAAAGAACTTTGGGATTTTCTAGCTACACGCTTTCAATCTATTGGTCTTGCTCATTATTATCAGCTACATGCCACTCTTGTTAGTTTTAATCAGGAAGTTGGGTAG

Coding sequence (CDS)

ATGGGAGATATCACCAAACCGATCAAGAATACACCTAAAAAGGATGGCACCAGTAGTGATACCTCCAAGCTTGTAGTTGTTGATGCTAGTCAAGACACCACCGAAGAAGTTGCTAAGTTTATTGAACGCTTAGAGGATTGGGATAGAAAAAATCATCAAATAATAACTTGGTTGGGTAACACCTCTATCCTTGCCATACATACTCAATTTGATGCATTTGACTCTGCTAAAGAACTTTGGGATTTTCTAGCTACACGCTTTCAATCTATTGGTCTTGCTCATTATTATCAGCTACATGCCACTCTTGTTAGTTTTAATCAGGAAGTTGGGTAG

Protein sequence

MGDITKPIKNTPKKDGTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLGNTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG

Homology

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BLAST of CaUC02G035020 vs. NCBI nr
Match: XP_031739694.1 (uncharacterized protein LOC105434738 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-35
Identity = 81/112 (72.32%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 2   GDITKPIKNTPKKDGT---SSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWL 61
           GDITKP+K TP  D T    +D S + V    Q+TT E  K+IERLEDWD KNHQIITWL
Sbjct: 41  GDITKPVKPTPLMDTTENIDTDPSDVTV----QETTAETDKYIERLEDWDSKNHQIITWL 100

Query: 62  GNTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           GNTSI AIHTQFDAFD+AKELWDFL+TRFQSIGLAHYYQLH+ LVS NQE G
Sbjct: 101 GNTSIPAIHTQFDAFDTAKELWDFLSTRFQSIGLAHYYQLHSRLVSLNQEGG 148

[Close]

BLAST of CaUC02G035020 vs. NCBI nr
Match: KAA0053979.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 78/109 (71.56%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 2   GDITKPIKNTPKKDGTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLGNT 61
           GDITKP+K  P    T  ++ +   +    DTT E  K+IERLEDWDRKNHQIITWLGNT
Sbjct: 40  GDITKPVKPIPPVQSTGQNSIEHNDI-MDHDTTAEDIKYIERLEDWDRKNHQIITWLGNT 99

Query: 62  SILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           SI  IHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLH+TLVS NQEVG
Sbjct: 100 SIPVIHTQFDAFDTAKELWDFLYTRFQSIGLAHYYQLHSTLVSLNQEVG 147

[Close]

BLAST of CaUC02G035020 vs. NCBI nr
Match: KAA0037189.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK13883.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 7.9e-33
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 2   GDITKPIK-NTPKKD-GTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLG 61
           GDITKPIK  TP K+   +++TS +++     +TT E  K+IERLEDWD KNHQIITWLG
Sbjct: 16  GDITKPIKPTTPMKNIDNTANTSDVLI----HETTAEDIKYIERLEDWDSKNHQIITWLG 75

Query: 62  NTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           NTSI AIHTQ D+FD+AKELWDFLATRFQSIGLAHYYQL++TL++ NQEVG
Sbjct: 76  NTSIPAIHTQLDSFDTAKELWDFLATRFQSIGLAHYYQLYSTLINLNQEVG 122

[Close]

BLAST of CaUC02G035020 vs. NCBI nr
Match: XP_016901896.1 (PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 7.9e-33
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 2   GDITKPIK-NTPKKD-GTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLG 61
           GDITKPIK  TP K+   +++TS +++     +TT E  K+IERLEDWD KNHQIITWLG
Sbjct: 41  GDITKPIKPTTPMKNIDNTANTSDVLI----HETTAEDIKYIERLEDWDSKNHQIITWLG 100

Query: 62  NTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           NTSI AIHTQ D+FD+AKELWDFLATRFQSIGLAHYYQL++TL++ NQEVG
Sbjct: 101 NTSIPAIHTQLDSFDTAKELWDFLATRFQSIGLAHYYQLYSTLINLNQEVG 147

[Close]

BLAST of CaUC02G035020 vs. NCBI nr
Match: KAA0047794.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-31
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 2   GDITKPI------KNTPKKDGTSSD--TSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQ 61
           GDITKP+      KNT K +   +D  TS ++V     + T E  ++IERLEDWD KNHQ
Sbjct: 41  GDITKPVKPTFPMKNTSKNNTEHNDANTSDIIV----HEPTVEDIQYIERLEDWDSKNHQ 100

Query: 62  IITWLGNTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           IITWLGNTSI AIHTQFD FDSAKELW+FL TRFQSIGLAHYYQLH+TLV+ NQEVG
Sbjct: 101 IITWLGNTSIPAIHTQFDTFDSAKELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVG 153

[Close]

BLAST of CaUC02G035020 vs. ExPASy TrEMBL
Match: A0A5A7UKE6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00500 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 78/109 (71.56%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 2   GDITKPIKNTPKKDGTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLGNT 61
           GDITKP+K  P    T  ++ +   +    DTT E  K+IERLEDWDRKNHQIITWLGNT
Sbjct: 40  GDITKPVKPIPPVQSTGQNSIEHNDI-MDHDTTAEDIKYIERLEDWDRKNHQIITWLGNT 99

Query: 62  SILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           SI  IHTQFDAFD+AKELWDFL TRFQSIGLAHYYQLH+TLVS NQEVG
Sbjct: 100 SIPVIHTQFDAFDTAKELWDFLYTRFQSIGLAHYYQLHSTLVSLNQEVG 147

[Close]

BLAST of CaUC02G035020 vs. ExPASy TrEMBL
Match: A0A5D3CPU5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00700 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.8e-33
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 2   GDITKPIK-NTPKKD-GTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLG 61
           GDITKPIK  TP K+   +++TS +++     +TT E  K+IERLEDWD KNHQIITWLG
Sbjct: 16  GDITKPIKPTTPMKNIDNTANTSDVLI----HETTAEDIKYIERLEDWDSKNHQIITWLG 75

Query: 62  NTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           NTSI AIHTQ D+FD+AKELWDFLATRFQSIGLAHYYQL++TL++ NQEVG
Sbjct: 76  NTSIPAIHTQLDSFDTAKELWDFLATRFQSIGLAHYYQLYSTLINLNQEVG 122

[Close]

BLAST of CaUC02G035020 vs. ExPASy TrEMBL
Match: A0A1S4E0Y9 (uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.8e-33
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 2   GDITKPIK-NTPKKD-GTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLG 61
           GDITKPIK  TP K+   +++TS +++     +TT E  K+IERLEDWD KNHQIITWLG
Sbjct: 41  GDITKPIKPTTPMKNIDNTANTSDVLI----HETTAEDIKYIERLEDWDSKNHQIITWLG 100

Query: 62  NTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           NTSI AIHTQ D+FD+AKELWDFLATRFQSIGLAHYYQL++TL++ NQEVG
Sbjct: 101 NTSIPAIHTQLDSFDTAKELWDFLATRFQSIGLAHYYQLYSTLINLNQEVG 147

[Close]

BLAST of CaUC02G035020 vs. ExPASy TrEMBL
Match: A0A5A7TXR0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00330 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.5e-32
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 2   GDITKPI------KNTPKKDGTSSD--TSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQ 61
           GDITKP+      KNT K +   +D  TS ++V     + T E  ++IERLEDWD KNHQ
Sbjct: 41  GDITKPVKPTFPMKNTSKNNTEHNDANTSDIIV----HEPTVEDIQYIERLEDWDSKNHQ 100

Query: 62  IITWLGNTSILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           IITWLGNTSI AIHTQFD FDSAKELW+FL TRFQSIGLAHYYQLH+TLV+ NQEVG
Sbjct: 101 IITWLGNTSIPAIHTQFDTFDSAKELWNFLYTRFQSIGLAHYYQLHSTLVNLNQEVG 153

[Close]

BLAST of CaUC02G035020 vs. ExPASy TrEMBL
Match: A0A1S3BBA1 (uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 74/109 (67.89%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 2   GDITKPIKNTPKKDGTSSDTSKLVVVDASQDTTEEVAKFIERLEDWDRKNHQIITWLGNT 61
           GDITKP+K                      +T+ E  ++IERLEDWD KNHQIITWLGNT
Sbjct: 41  GDITKPVK------------------PIVHETSAEDIQYIERLEDWDSKNHQIITWLGNT 100

Query: 62  SILAIHTQFDAFDSAKELWDFLATRFQSIGLAHYYQLHATLVSFNQEVG 111
           SI AIHTQFDAFDSAKELWDFL TRFQSIGLAHYYQLH+TLVS NQEVG
Sbjct: 101 SIPAIHTQFDAFDSAKELWDFLYTRFQSIGLAHYYQLHSTLVSLNQEVG 131

The following BLAST results are available for this feature:

BLAST of CaUC02G035020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739694.1	8.5e-35	72.32	uncharacterized protein LOC105434738 [Cucumis sativus]	[more]
KAA0053979.1	2.5e-34	71.56	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, cata...	[more]
KAA0037189.1	7.9e-33	69.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_016901896.1	7.9e-33	69.37	PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]	[more]
KAA0047794.1	1.1e-31	66.67	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of CaUC02G035020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G035020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKE6	1.2e-34	71.56	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3CPU5	3.8e-33	69.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A1S4E0Y9	3.8e-33	69.37	uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=...	[more]
A0A5A7TXR0	5.5e-32	66.67	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BBA1	1.6e-31	67.89	uncharacterized protein LOC103488200 OS=Cucumis melo OX=3656 GN=LOC103488200 PE=...	[more]

BLAST of CaUC02G035020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G035020.1	CaUC02G035020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding