CaUC02G034870 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G034870
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	patellin-1-like
Location	Ciama_Chr02: 13152402 .. 13153296 (+)
RNA-Seq Expression	CaUC02G034870
Synteny	CaUC02G034870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTCATTTCAAAATCTCAAATCATCTTCACACTGCCACTCCATTCTCTCTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCCTTTCTTTCTCTGCTTCCATTTCTTTTCCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTAAATTTGGCTAGCAGTAATCAAATATAGGGTTTTTTTTTTTTTTTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTTTTTTTTTTTTTTTTTTTTTAATTTATCATAATTCAAAGTCATATAAATAACTCTGCTTCTCTAATGATAAGGATTAGCAAAATTATACATTTGAACTTCTTTTATATATGAGTATGTGCAATTCTTTTGAAAATTTTAGGACAAATTCGAATTGGGTCATTGTTCTTTCTTTCTTTCCTATCTCCGATGAGGTTGTTTTTGTAAAATGGCAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCAGCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAGGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA

mRNA sequence

CATTTCATTTCAAAATCTCAAATCATCTTCACACTGCCACTCCATTCTCTCTTTTCTCTGTTCTATATAAGCCACTTTGCTTCATCATTCTTCCATCCCACCCTTTCTTTCTCTGCTTCCATTTCTTTTCCTCCTTCTCTACTAGGATTTTAGCATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCAGCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAGGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA

Coding sequence (CDS)

ATGGCTACTGCAGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTACCACCGCCAAAGGTTGAAGAAGAAGAGGCTCCGCCTCCGGTGGCGGCAGATCCAGCAGCCGAGGAGGTGGAAAAAGAAGAAGAAACCACCGATCCCCCTGCGCCTGAAGAGACAGAAACTCCTGTTGAAGTTGAAACCAAGGAAGTAGTTGTAGAAGAAGAGCCAAAGGAAGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGCTGAGGCTGTGGTGGAGGAGGAGAGCAAACCGGCGGAGGAGGAGGCGGTGGAAGAGAAGCCTAAAGAAGAAACAGAGGAGAAAGCAGAAGAAGAACCTGCAGCAGAGAAGGCTGAGTAA

Protein sequence

MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAPEETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEEEAEAVVEEESKPAEEEAVEEKPKEETEEKAEEEPAAEKAE

Homology

[Close]

BLAST of CaUC02G034870 vs. NCBI nr
Match: XP_038900947.1 (cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 2.4e-31
Identity = 117/144 (81.25%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAPEE 60
           MATAEVV PET LPEEATEVVEVPPPKVEEEEAPPP A DP AEEV KEEE TDPPA EE
Sbjct: 1   MATAEVVPPETVLPEEATEVVEVPPPKVEEEEAPPPAAVDPPAEEVAKEEEATDPPAAEE 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEEEAEAVVEEESKPAEEEA-------- 120
           TETPVEVETKEVVVEEEPKEEKK    EEEE+EEE  EAVVEEESKPAE EA        
Sbjct: 61  TETPVEVETKEVVVEEEPKEEKK----EEEEKEEEAGEAVVEEESKPAEAEAPAEEEAVE 120

Query: 121 -VEEKPKEETEEKAEEEPAAEKAE 136
            VEEKP EETEEK EEEPAAEKAE
Sbjct: 121 VVEEKPVEETEEKPEEEPAAEKAE 140

[Close]

BLAST of CaUC02G034870 vs. NCBI nr
Match: XP_004140479.1 (cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothetical protein Csa_004785 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 9.7e-25
Identity = 112/147 (76.19%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAP 60
           MATAEVVTPETALPEEATEV  VEVPPPKVEEEEAPPPV  DP AEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEEE------AEAVVEEESK----PA 120
           EE ETPVEVETKEVVVEEE KEEK EEEE  EEEE+EE      AE VVEEE+K     A
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 121 EEEAVEEKPKEETEEKAEEEPAAEKAE 136
           EE+AVE KP EE EEKAEEE  AEK E
Sbjct: 121 EEKAVEVKPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of CaUC02G034870 vs. NCBI nr
Match: XP_008455963.1 (PREDICTED: patellin-1-like [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 107/155 (69.03%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADP AEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEE------------------EAEAV 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+EE                  EAE  
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 VEEESKPAEEEAVEEKPKEETEEKAEEEPAAEKAE 136
           VEEE +    E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of CaUC02G034870 vs. NCBI nr
Match: KAA0053292.1 (patellin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 107/155 (69.03%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADP AEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEE------------------EAEAV 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+EE                  EAE  
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 VEEESKPAEEEAVEEKPKEETEEKAEEEPAAEKAE 136
           VEEE +    E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of CaUC02G034870 vs. NCBI nr
Match: KAG6604898.1 (hypothetical protein SDJN03_02215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 9.5e-04
Identity = 79/139 (56.83%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEVVEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAPEE 60
           MATAEVVT E AL EE TE V+VPP KVEEE    P A DP AEE+ KEE      A E 
Sbjct: 1   MATAEVVTQEAALQEEVTE-VQVPPLKVEEE---APAAVDPPAEELAKEE------AAEV 60

Query: 61  TETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEEEAEAVVEE------ESKPAEEEAVE 120
            E PVEVETKEVV EEE +EE+ +EE  EE++E E AE   EE      ES+PA   A E
Sbjct: 61  AEPPVEVETKEVVAEEEEEEEEAKEEVVEEKKEVEAAEVEAEEKEEAPAESEPAVAAAAE 120

Query: 121 EKPKEETEEKAEEEPAAEK 134
           E+ +EE E K E EPAAE+
Sbjct: 121 EEEEEEEEAKPEAEPAAEE 129

[Close]

BLAST of CaUC02G034870 vs. ExPASy TrEMBL
Match: A0A0A0KAS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.7e-25
Identity = 112/147 (76.19%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAP 60
           MATAEVVTPETALPEEATEV  VEVPPPKVEEEEAPPPV  DP AEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEEE------AEAVVEEESK----PA 120
           EE ETPVEVETKEVVVEEE KEEK EEEE  EEEE+EE      AE VVEEE+K     A
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 121 EEEAVEEKPKEETEEKAEEEPAAEKAE 136
           EE+AVE KP EE EEKAEEE  AEK E
Sbjct: 121 EEKAVEVKPAEEAEEKAEEEVGAEKVE 147

[Close]

BLAST of CaUC02G034870 vs. ExPASy TrEMBL
Match: A0A5A7UC23 (Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001030 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.4e-22
Identity = 107/155 (69.03%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADP AEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEE------------------EAEAV 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+EE                  EAE  
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 VEEESKPAEEEAVEEKPKEETEEKAEEEPAAEKAE 136
           VEEE +    E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

[Close]

BLAST of CaUC02G034870 vs. ExPASy TrEMBL
Match: A0A1S3C239 (patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.4e-22
Identity = 107/155 (69.03%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 1   MATAEVVTPETALPEEATEV--VEVPPPKVEEEEAPPPVAADPAAEEVEKEEETTDPPAP 60
           MATAEVVTP+TA+PEEATEV  VEVP PKVEEEEAPPPV ADP AEEV KEE+ TDPPA 
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 61  EETETPVEVETKEVVVEEEPKEEKKEEEEEEEEEEEE------------------EAEAV 120
           EETETPVE ETKEVVVEEE KEEK EEE  EEEE+EE                  EAE  
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEEVVEEEEKEEKKTEEAAEGAVLEETKASEAETP 120

Query: 121 VEEESKPAEEEAVEEKPKEETEEKAEEEPAAEKAE 136
           VEEE +    E VEEKP EETEEK EEE  AEKAE
Sbjct: 121 VEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

The following BLAST results are available for this feature:

BLAST of CaUC02G034870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900947.1	2.4e-31	81.25	cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benin...	[more]
XP_004140479.1	9.7e-25	76.19	cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothe...	[more]
XP_008455963.1	1.3e-21	69.03	PREDICTED: patellin-1-like [Cucumis melo]	[more]
KAA0053292.1	1.3e-21	69.03	patellin-1-like [Cucumis melo var. makuwa]	[more]
KAG6604898.1	9.5e-04	56.83	hypothetical protein SDJN03_02215, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CaUC02G034870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G034870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAS3	4.7e-25	76.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1	[more]
A0A5A7UC23	6.4e-22	69.03	Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G0010...	[more]
A0A1S3C239	6.4e-22	69.03	patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1	[more]

BLAST of CaUC02G034870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G034870.1	CaUC02G034870.1	mRNA