CaUC02G032120 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G032120
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 6743221 .. 6745716 (+)
RNA-Seq ExpressionCaUC02G032120
SyntenyCaUC02G032120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTATCTTCTCAATAGCAGCTTGATGTAAAGTGCTAAACCATCGATATCCTTATGCGAACCTGGGATCAAGGTGTACTGATCGGAGATGAGCTAGCCATTTCTTTATAGTGTACGGTCTGCTTATCCTTCATCTTATAATCATTTTTTTTTCTTCTTTTCCTGCTGTTCATTGTTGAATTGAATTGGAAAGTGCTAGTTTTCTTCTAAGCTTTTAGCAAAAAGAAAACGTCCCAATGGCATTCCCTGAATCCTTCTTAAAATTTCTCTGGCTCCAAATGTGGTAATTTGTTAAAGATTTTAGGAGGGACATGCTTTGGATTTGTTAGTAGGAACAGCAATTGCTTTCATCCATCTCTTCTGTCTAGTAGATATATCCTACAAAGCTTGCATAATTCTCTTTATTAATGTTTTGAAGAGCATGAACAGTTCCTTTGCATTTTATAAACATTACATGTCACATCCTCTATGTTTCTCTTCTTTCATTGTAAAAAAAAAAGATGCATTTTGTTGGTTCACCGAGTTTCTTGTCTTCCAAGGTCCCAAGTGGTAATGTTTTAACTAGTTGAACTATGTTTTAGGTTGGTCTCAAATGAAAAGTCTATATTGATTCTTAAACTACAGTTTATTTTTCTTTTCTTGGTTCAACAATTGCGAGGGTGGAGATATAGGGTCTTATTTTAGCTGGTTGATTTTTCTTTCTAAACTAAATTGGGACCTTTTGAGAATGGTTAATTTCTTCTATTTTCTAATCATTTTTCATGCTTTCCTTTTTCTTTAGTCAACGTGTCCTTTTAATCTCGATTTATAAAATTTTAATGTTGTTTTGATTCTTAAAATTTTCGTCAATTGTCTCAAACTTTTTGGTTATTTTAAGAATATTGTTAGTGCTCACTTGTTTTAAAAATGAACGGTGGTAAGATGAGGTCTTTTTTGGCTGGTTGACTTGTTGAATTACATTTTTAGTCACCAAAATTTTAAAAATATACGTGTTTGCTTAATGAGTTATCAAAATCTACCATTCTTATTTCTTTGAATATTTAAATTTAAATAGATTTAAAAAGGTCTTTAAAGAAATTTATTATTATTATTTTTAAAAAAATTGTATGACATTCTTAACTTGTGGTCAAAAGTAACCTTTAAAAAACTTAAATCAACTAAAAAGTTATATTTTAAAAATTGAGAGAGAAATATCTATTTTACAAAAAGTTAGAGGTTAAAAAAGTGATTTTCTTAGATAATATTAGAGAATCTAATAATAAACTTGGACTGATCTATAAAATTAATAGGATAAATTATCCTCTTAAGAGTTATTCTATTTTGGAAAATTGGATGGAATACGATGCCTATTGACATGTTCCCAAATGAGAATTTAAGATAGATTTGCTTTCAACTCCTACAATGCAAGAATGCTTTAAGAAAAGGCAAAAATAAATCTCTTGCAAGGAAGGATGAAGAACAAAGTGTTATTTTTAATTTAAAACTAATTTAACTTATTTAACACAACTTTTCACACCCGCAACTTCAATTTAAAATGAACTAAATTGATATACGATATAGAGGATAAATCTTCGGTATCCAGATTGATAATACAAGTTCTTGCCAGCTTATACGAAGAAGATATGGATTAAAATAGTTGTAACTCTAAATTAACCCAAAGCCTCTACATTACACCAACTATTTTTACAATCCATGAAACGCCATTAAAGAGCCTTCAAACTTGAAAAAGACTAATTCTCTAATACTTTGCGGAGCGAGACATCATGGTCATAAACTCATTAATGTCCACCATACCGTCGCCGTCGCTATCCACCGCCCTCACCATCCGCCGGCAATCCTCAATGCTACACTTTTCCCCCAATCCCTTCAACACCCTCATCACTTCCTCTGCACTAATCTTCCGATCCCCATTCAAATCGAACGTCTTGAAAGCAAATTCAATCTCTCTCGCTTGAACTCCGCCGCCGCTCCGGTGAACCTCCATAAACTCGTTCAAGTTTATATACCCATCGCCGTCGGAATCCACCGCCTTGAAAATCTTCTGCACCTCTTCCATTGAATTCCCTCTCCCTAGCGCCTTCAGAATTCCCCTGTATTCATGCTTTGAGATTCTCCCGTCTCTGTTCGTATCGAACTTGTTGAAGATCTGCTTTATCTCCTCCGTGCTCGGCTGCAGCGCCCGACGGAGCCCAGAGCTCTGGCGGTCCTTGAAGGAGAACAGCCGGGAAGGTTCTCGGAGGAACTTTTTCTTTGAGACGTTGTATTGCAGGTCAAGGAGATTTGGGTTTATTGGCATTTTGTTTGCTGGGTTGCTGTGTTTTTGTATGGTTAAATGAAATGAAGATTGATGATCAAATTTTCGACGAACCCAGATGGTTTTTGAGTGGTTTAGTAGTGAAAGCAGGATTGCTCTGTTTTCTGTTAGTGAAACAGAGGAAGACTGGCGTTGAAATTTTTAAGATGGAGGCAGATGGACTTGAAGGGTTTAAATAG

mRNA sequence

ATGAAGCCTTCAAACTTGAAAAAGACTAATTCTCTAATACTTTGCGGAGCGAGACATCATGGTCATAAACTCATTAATGTCCACCATACCGTCGCCGTCGCTATCCACCGCCCTCACCATCCGCCGGCAATCCTCAATGCTACACTTTTCCCCCAATCCCTTCAACACCCTCATCACTTCCTCTGCACTAATCTTCCGATCCCCATTCAAATCGAACGTCTTGAAAGCAAATTCAATCTCTCTCGCTTGAACTCCGCCGCCGCTCCGTTTATATACCCATCGCCGTCGGAATCCACCGCCTTGAAAATCTTCTGCACCTCTTCCATTGAATTCCCTCTCCCTAGCGCCTTCAGAATTCCCCTGTATTCATGCTTTGAGATTCTCCCGTCTCTGTTCGTATCGAACTTGTTGAAGATCTGCTTTATCTCCTCCGTGCTCGGCTGCAGCGCCCGACGGAGCCCAGAGCTCTGGCGGTCCTTGAAGGAGAACAGCCGGGAAGGTCAAGGAGATTTGGGTTTATTGGCATTTTGTTTGCTGGGTTGCTGTGTTTTTGTATGGTTAAATGAAATGAAGATTGATGATCAAATTTTCGACGAACCCAGATGGTTTTTGAGTGGTTTAGTAGTGAAAGCAGGATTGCTCTGTTTTCTGTTAGTGAAACAGAGGAAGACTGGCGTTGAAATTTTTAAGATGGAGGCAGATGGACTTGAAGGGTTTAAATAG

Coding sequence (CDS)

ATGAAGCCTTCAAACTTGAAAAAGACTAATTCTCTAATACTTTGCGGAGCGAGACATCATGGTCATAAACTCATTAATGTCCACCATACCGTCGCCGTCGCTATCCACCGCCCTCACCATCCGCCGGCAATCCTCAATGCTACACTTTTCCCCCAATCCCTTCAACACCCTCATCACTTCCTCTGCACTAATCTTCCGATCCCCATTCAAATCGAACGTCTTGAAAGCAAATTCAATCTCTCTCGCTTGAACTCCGCCGCCGCTCCGTTTATATACCCATCGCCGTCGGAATCCACCGCCTTGAAAATCTTCTGCACCTCTTCCATTGAATTCCCTCTCCCTAGCGCCTTCAGAATTCCCCTGTATTCATGCTTTGAGATTCTCCCGTCTCTGTTCGTATCGAACTTGTTGAAGATCTGCTTTATCTCCTCCGTGCTCGGCTGCAGCGCCCGACGGAGCCCAGAGCTCTGGCGGTCCTTGAAGGAGAACAGCCGGGAAGGTCAAGGAGATTTGGGTTTATTGGCATTTTGTTTGCTGGGTTGCTGTGTTTTTGTATGGTTAAATGAAATGAAGATTGATGATCAAATTTTCGACGAACCCAGATGGTTTTTGAGTGGTTTAGTAGTGAAAGCAGGATTGCTCTGTTTTCTGTTAGTGAAACAGAGGAAGACTGGCGTTGAAATTTTTAAGATGGAGGCAGATGGACTTGAAGGGTTTAAATAG

Protein sequence

MKPSNLKKTNSLILCGARHHGHKLINVHHTVAVAIHRPHHPPAILNATLFPQSLQHPHHFLCTNLPIPIQIERLESKFNLSRLNSAAAPFIYPSPSESTALKIFCTSSIEFPLPSAFRIPLYSCFEILPSLFVSNLLKICFISSVLGCSARRSPELWRSLKENSREGQGDLGLLAFCLLGCCVFVWLNEMKIDDQIFDEPRWFLSGLVVKAGLLCFLLVKQRKTGVEIFKMEADGLEGFK
Homology
[Close]
BLAST of CaUC02G032120 vs. ExPASy TrEMBL
Match: A0A0A9D0D5 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 26/69 (37.68%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 17  ARHHGHKLINVHHTVAVAIHRPHHPPAILNATLFPQSLQHPHHFLCTNLPIPIQIERLES 76
           A HHGH++++VH  +AV ++ PHHP AIL A   P+  QH H  L  +  I + +E  E 
Sbjct: 46  ASHHGHEIVHVHEAIAVPVYLPHHPLAILQAAAVPELAQHCHDLLGADPAILVPVEHEER 105

Query: 77  KFNLSRLNS 86
             ++ +L++
Sbjct: 106 PPDIPQLHA 114

The following BLAST results are available for this feature:
BLAST of CaUC02G032120 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC02G032120 vs.
Match NameE-valueIdentityDescription
BLAST of CaUC02G032120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9D0D52.8e-0437.68Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CaUC02G032120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G032120.1CaUC02G032120.1mRNA