CaUC02G031770 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G031770
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cystatin domain-containing protein
Location	Ciama_Chr02: 6249738 .. 6250073 (-)
RNA-Seq Expression	CaUC02G031770
Synteny	CaUC02G031770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTGTGCCAAAAGATGACCATTTAAAGCCAATTGTGGATATTCATGAAGAATTTGTGCAAAACGTTGGAAGGTTGGCAGCGGATCATTATAACAACACAACGAAAATAGAAAATAAAGTGAAGTTCAAGCGCGTGGTGAATGGTCTAAGTGGGGGCGTTATTTTCTCCTTCTCTGGTGTGTTATTTGAACTAGTGGTAGAAGTTGAAGAAGATGAATTTAATAGTTCATATATTGCAAAAGTGAAGGCCCGTCAGTTTTCTCTACGTGAATTCGTCCCTATAAGCTATGAATTCATATCTTTTGAGCCTGTTCTCACGTACAAGAAGTAA

mRNA sequence

ATGAGTTGTGTGCCAAAAGATGACCATTTAAAGCCAATTGTGGATATTCATGAAGAATTTGTGCAAAACGTTGGAAGGTTGGCAGCGGATCATTATAACAACACAACGAAAATAGAAAATAAAGTGAAGTTCAAGCGCGTGGTGAATGGTCTAAGTGGGGGCGTTATTTTCTCCTTCTCTGGTGTGTTATTTGAACTAGTGGTAGAAGTTGAAGAAGATGAATTTAATAGTTCATATATTGCAAAAGTGAAGGCCCGTCAGTTTTCTCTACGTGAATTCGTCCCTATAAGCTATGAATTCATATCTTTTGAGCCTGTTCTCACGTACAAGAAGTAA

Coding sequence (CDS)

ATGAGTTGTGTGCCAAAAGATGACCATTTAAAGCCAATTGTGGATATTCATGAAGAATTTGTGCAAAACGTTGGAAGGTTGGCAGCGGATCATTATAACAACACAACGAAAATAGAAAATAAAGTGAAGTTCAAGCGCGTGGTGAATGGTCTAAGTGGGGGCGTTATTTTCTCCTTCTCTGGTGTGTTATTTGAACTAGTGGTAGAAGTTGAAGAAGATGAATTTAATAGTTCATATATTGCAAAAGTGAAGGCCCGTCAGTTTTCTCTACGTGAATTCGTCCCTATAAGCTATGAATTCATATCTTTTGAGCCTGTTCTCACGTACAAGAAGTAA

Protein sequence

MSCVPKDDHLKPIVDIHEEFVQNVGRLAADHYNNTTKIENKVKFKRVVNGLSGGVIFSFSGVLFELVVEVEEDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK

Homology

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BLAST of CaUC02G031770 vs. NCBI nr
Match: KAE8649716.1 (hypothetical protein Csa_012476 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-06
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 0


Query: 11  KPIVDIHEEFVQNVGRLAADHYNNTTKIENKVKFKRVVNGLSGGVIFSFS---GVLFELV 70
           +PI DI++  VQ +G L  D +N   K    +KF RVVNGL  G +  FS   G ++ELV
Sbjct: 8   EPIKDINDPQVQEIGNLTVDDHNK--KTGENLKFVRVVNGLFAGFVDPFSPLGGTVYELV 67

Query: 71  VE-VEEDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
           +E +   + N +Y  KV A   ++R  + + Y F SFEPVL Y++
Sbjct: 68  LEAINAGKINWTYKVKVSA-STTIRP-LGVVYNFQSFEPVLQYEE 108

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BLAST of CaUC02G031770 vs. NCBI nr
Match: KGN54823.1 (hypothetical protein Csa_012607 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 1   MSCVPKDDHLKPIVDIHEEFVQNVGRLAADHYNNTTKIENKVKFKRVVNGLSGGVIFS-- 60
           MS       LKPI+DI++  VQ +G LA ++  +    E K+KF RVVNGL         
Sbjct: 1   MSIEESRHRLKPIIDINDPHVQALGELAVENLYSKNSGE-KLKFVRVVNGLKSDKYIGPG 60

Query: 61  -FSGVLFELVVEVE-EDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
               +L+ LV+E +  +E N +Y  K++     L     I + F+SFEPVL Y K
Sbjct: 61  FTEVILYHLVLEAKTNEEINWTYATKLEEVSGGL-----IRHVFLSFEPVLPYYK 109

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BLAST of CaUC02G031770 vs. ExPASy TrEMBL
Match: A0A0A0L191 (Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G508520 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.8e-05
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 10  LKPIVDIHEEFVQNVGRLAADHYNNTTKIENKVKFKRVVNGLSGGVIFS---FSGVLFEL 69
           LKPI+DI++  VQ +G+LA + +++    E K+KF RVVNGL             +L+ L
Sbjct: 10  LKPIIDINDPHVQIIGKLAVEDHDSHNPGE-KLKFVRVVNGLKSDKYIGPGFTEVILYHL 69

Query: 70  VVEVE-EDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
           V+E +  +E N +Y  K++     +     I + F+SFEPVL Y K
Sbjct: 70  VLEAKTNEEINWTYATKLE----KVYSGCLIRHVFLSFEPVLPYNK 110

[Close]

BLAST of CaUC02G031770 vs. ExPASy TrEMBL
Match: A0A0A0KZ98 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508510 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.8e-05
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 1   MSCVPKDDHLKPIVDIHEEFVQNVGRLAADHYNNTTKIENKVKFKRVVNGLSGGVIFS-- 60
           MS       LKPI+DI++  VQ +G LA ++  +    E K+KF RVVNGL         
Sbjct: 1   MSIEESRHRLKPIIDINDPHVQALGELAVENLYSKNSGE-KLKFVRVVNGLKSDKYIGPG 60

Query: 61  -FSGVLFELVVEVE-EDEFNSSYIAKVKARQFSLREFVPISYEFISFEPVLTYKK 112
               +L+ LV+E +  +E N +Y  K++     L     I + F+SFEPVL Y K
Sbjct: 61  FTEVILYHLVLEAKTNEEINWTYATKLEEVSGGL-----IRHVFLSFEPVLPYYK 109

The following BLAST results are available for this feature:

BLAST of CaUC02G031770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649716.1	6.4e-06	40.00	hypothetical protein Csa_012476 [Cucumis sativus]	[more]
KGN54823.1	1.2e-04	36.52	hypothetical protein Csa_012607 [Cucumis sativus]	[more]

BLAST of CaUC02G031770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G031770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L191	5.8e-05	36.79	Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G508520 PE...	[more]
A0A0A0KZ98	5.8e-05	36.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508510 PE=4 SV=1	[more]

BLAST of CaUC02G031770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 10..106 e-value: 2.6E-8 score: 35.7
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 18..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G031770.1	CaUC02G031770.1	mRNA