CaUC02G031250 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G031250
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 5611198 .. 5611524 (+)
RNA-Seq ExpressionCaUC02G031250
SyntenyCaUC02G031250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTTTGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

mRNA sequence

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTTTGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

Coding sequence (CDS)

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTTTGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAATCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

Protein sequence

MGIFKKNMLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFNDVDGCRPQKDHQHNINGDGLGNMAPQSPKEDKSIVTSLPYMN
Homology
BLAST of CaUC02G031250 vs. NCBI nr
Match: KAE8646139.1 (hypothetical protein Csa_016560, partial [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
           MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 25  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 84

Query: 61  NQESSEFNDVDGCRPQKDHQHNINGDGLGNMAPQS 94
           N ESSE+N VD C+  K  + N NG    NMAPQS
Sbjct: 85  NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQS 116

BLAST of CaUC02G031250 vs. NCBI nr
Match: KAA0036627.1 (hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK03365.1 hypothetical protein E5676_scaffold2392G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 63/118 (53.39%), Postives = 73/118 (61.86%), Query Frame = 0

Query: 8   MLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFND 67
           M++ VGVL+IST LIEITKA   I   GAPQ GVE+VCSPEDPRV+ L+YAN ESSEFN 
Sbjct: 1   MVVLVGVLLISTTLIEITKATSRIVNYGAPQ-GVEIVCSPEDPRVFKLHYANDESSEFNA 60

Query: 68  VDGCRPQKDHQHNINGDGLG--------NMAPQSP----------KEDKSIVTSLPYM 108
           VD C   K    N+N  G          N+APQSP          K  K++VT LPYM
Sbjct: 61  VDDC---KTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQETKGVKNVVTPLPYM 114

BLAST of CaUC02G031250 vs. ExPASy TrEMBL
Match: A0A0A0K4C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 0

Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA-IRSISYIGAPQGGVEVVCSPEDPRVYNLNYAN 60
           M I KKNM +FVG+L+IST LIEITKA  RS++Y GAPQ GVE+VCSPEDPRV+ L+YAN
Sbjct: 1   MDITKKNMFVFVGLLLISTTLIEITKATTRSMNY-GAPQ-GVEIVCSPEDPRVFRLHYAN 60

Query: 61  QESSEFNDVDGCRPQKDHQHNINGDGLG-NMAPQSPKEDKSIVTS 104
            ESSE+N VD C   K    N+N DG   N+  QSP ++ +  TS
Sbjct: 61  DESSEYNAVDDCATLKS---NLNFDGRSQNVPAQSPSQNVAPQTS 100

BLAST of CaUC02G031250 vs. ExPASy TrEMBL
Match: A0A0A0K7P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.8e-18
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 1  MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
          MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 1  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 60

Query: 61 NQESSEFNDVDGCRPQKDHQHNINGDGLGNMAPQS 94
          N ESSE+N VD C+  K  + N NG    NMAPQS
Sbjct: 61 NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQS 92

BLAST of CaUC02G031250 vs. ExPASy TrEMBL
Match: A0A5D3BWB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00270 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 63/118 (53.39%), Postives = 73/118 (61.86%), Query Frame = 0

Query: 8   MLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQESSEFND 67
           M++ VGVL+IST LIEITKA   I   GAPQ GVE+VCSPEDPRV+ L+YAN ESSEFN 
Sbjct: 1   MVVLVGVLLISTTLIEITKATSRIVNYGAPQ-GVEIVCSPEDPRVFKLHYANDESSEFNA 60

Query: 68  VDGCRPQKDHQHNINGDGLG--------NMAPQSP----------KEDKSIVTSLPYM 108
           VD C   K    N+N  G          N+APQSP          K  K++VT LPYM
Sbjct: 61  VDDC---KTLNRNLNFGGRSQDVTPQSPNVAPQSPNVAPQSSQETKGVKNVVTPLPYM 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646139.11.2e-1763.16hypothetical protein Csa_016560, partial [Cucumis sativus][more]
KAA0036627.14.6e-1753.39hypothetical protein E6C27_scaffold191G001550 [Cucumis melo var. makuwa] >TYK033... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K4C83.4e-1859.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1[more]
A0A0A0K7P85.8e-1863.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1[more]
A0A5D3BWB12.2e-1753.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G031250.1CaUC02G031250.1mRNA