CaUC02G031240 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G031240
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr02: 5586343 .. 5586633 (+)
RNA-Seq ExpressionCaUC02G031240
SyntenyCaUC02G031240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCCTCCAAAGATTACATGCTCCTTTTTATTGGTGTTCTTCTCTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAACTAATGTTGTATGTAGTCCAAGAAAAGATCTTGAACTACATAATGGTAACGAATATGTGAGAAGGGACAACCCAACCCATCCTTGTAGACCTCAACAGTATGGCCAAAATAGAATTCATGGAGAAGAAACAAGAAACAGGGTTATTTATGACTCAAGAAAGATCAAAGGGGATAAACATATTGTGAATCCTCAACCATATAATGTTTAA

mRNA sequence

ATGGTTGCCTCCAAAGATTACATGCTCCTTTTTATTGGTGTTCTTCTCTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAACTAATGTTGTATGTAGTCCAAGAAAAGATCTTGAACTACATAATGGTAACGAATATGTGAGAAGGGACAACCCAACCCATCCTTGTAGACCTCAACAGTATGGCCAAAATAGAATTCATGGAGAAGAAACAAGAAACAGGGTTATTTATGACTCAAGAAAGATCAAAGGGGATAAACATATTGTGAATCCTCAACCATATAATGTTTAA

Coding sequence (CDS)

ATGGTTGCCTCCAAAGATTACATGCTCCTTTTTATTGGTGTTCTTCTCTTTAGCATGAACTTTGTTGAAATTGCAAGTGCAACTAATGTTGTATGTAGTCCAAGAAAAGATCTTGAACTACATAATGGTAACGAATATGTGAGAAGGGACAACCCAACCCATCCTTGTAGACCTCAACAGTATGGCCAAAATAGAATTCATGGAGAAGAAACAAGAAACAGGGTTATTTATGACTCAAGAAAGATCAAAGGGGATAAACATATTGTGAATCCTCAACCATATAATGTTTAA

Protein sequence

MVASKDYMLLFIGVLLFSMNFVEIASATNVVCSPRKDLELHNGNEYVRRDNPTHPCRPQQYGQNRIHGEETRNRVIYDSRKIKGDKHIVNPQPYNV
Homology
[Close]
BLAST of CaUC02G031240 vs. NCBI nr
Match: KGN44636.2 (hypothetical protein Csa_016656 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 0 

Query: 1   MVASKDYMLLFIGVLLFSMNFVEIASA------------TNVVCSPRK---DLEL-HNGN 60
           MV SK  M +FIG+LLFS+NFVEIASA            T VVC P +   D EL  +  
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  EYVRRDNPTHPCRPQQYGQNRIHGEETRNRV-IYDSRKIKGDK--HIVN 91
           +Y    N  +PC+  +  ++ I+G++  N   +  S+ +KGDK  HIV+
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKDPHIVD 109

[Close]
BLAST of CaUC02G031240 vs. NCBI nr
Match: KAE8646140.1 (hypothetical protein Csa_015664 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 1   MVASKDYMLLFIGVLLFSMNFVEIASA------------TNVVCSPRK---DLEL-HNGN 60
           MV SK  M +FIG+LLFS+NFVEIASA            T VVC P +   D EL  +  
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRPYEDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  EYVRRDNPTHPCRPQQYGQNRIHGEETRNRV-IYDSRKIKGDK--HIVN 91
           +Y    N  +PC+  +  ++ I+ ++  N   +  S+ +KGDK  HIV+
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKDPHIVD 109

[Close]
BLAST of CaUC02G031240 vs. ExPASy TrEMBL
Match: A0A0A0K605 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.8e-06
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 0 

Query: 1   MVASKDYMLLFIGVLLFSMNFVEIASA------------TNVVCSPRK---DLEL-HNGN 60
           MV SK  M +FIG+LLFS+NFVEIASA            T VVC P +   D EL  +  
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  EYVRRDNPTHPCRPQQYGQNRIHGEETRNRV-IYDSRKIKGDK--HIVN 91
           +Y    N  +PC+  +  ++ I+G++  N   +  S+ +KGDK  HIV+
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINGDKVGNTFDVNTSQNVKGDKDPHIVD 109

[Close]
BLAST of CaUC02G031240 vs. ExPASy TrEMBL
Match: A0A0A0K3T5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.6e-05
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 1   MVASKDYMLLFIGVLLFSMNFVEIASA------------TNVVCSPRK---DLEL-HNGN 60
           MV SK  M +FIG+LLFS+NFVEIASA            T VVC P +   D EL  +  
Sbjct: 1   MVVSKKNMAVFIGILLFSINFVEIASAARPIKRRSYGDNTKVVCGPPRRSIDFELDDDAQ 60

Query: 61  EYVRRDNPTHPCRPQQYGQNRIHGEETRNRV-IYDSRKIKGDK--HIVN 91
           +Y    N  +PC+  +  ++ I+ ++  N   +  S+ +KGDK  HIV+
Sbjct: 61  KYASWYNTVYPCKSLRKAKHSINRDKVGNTFDVNTSQNVKGDKDPHIVD 109

The following BLAST results are available for this feature:
BLAST of CaUC02G031240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44636.21.6e-0539.45hypothetical protein Csa_016656 [Cucumis sativus][more]
KAE8646140.11.4e-0438.53hypothetical protein Csa_015664 [Cucumis sativus][more]
BLAST of CaUC02G031240 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC02G031240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6057.8e-0639.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269050 PE=4 SV=1[more]
A0A0A0K3T56.6e-0538.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G270050 PE=4 SV=1[more]
BLAST of CaUC02G031240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G031240.1CaUC02G031240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process